het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Theobroma cacao (Cacao) genome build 1.1 (tcc-b1.1)

Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
tcc-MIR399e-m1Theobroma cacao (Cacao) 1.1scaffold_1:9344729-9344845-10.47CGCCAAAGGAGAAUUGCCCUGmiR399siRNA21miRBase21-BestBlastHit
tcc-MIR398b-m1Theobroma cacao (Cacao) 1.1scaffold_2:40851275-40851439+178.03UGUGUUCUCAGGUCACCCCUUmiR398siRNA21miRBase21-BestBlastHit
tcc-MIR395a-m1Theobroma cacao (Cacao) 1.1scaffold_2:41727031-41727153+10348.65UGAAGUGUUUGGGGGAACUCCmiR395siRNA21miRBase21-BestBlastHit
tcc-MIR399i-m1Theobroma cacao (Cacao) 1.1scaffold_3:25998257-25998413-41.89UUGCCCUGUGACUGAUUCAGUsiRNA21miRBase21-BestBlastHit
tcc-MIR169i-m1Theobroma cacao (Cacao) 1.1scaffold_4:2880399-2880513+62.83UAGCCAAGGAUGAGUUGCCUGmiR169siRNA21miRBase21-BestBlastHit
tcc-MIR2111-m1Theobroma cacao (Cacao) 1.1scaffold_5:1418163-1418273+20.95UAAUCUGCAUCCUGAGGUUUUmiR2111siRNA21miRBase21-BestBlastHit
tcc-MIR395b-m1Theobroma cacao (Cacao) 1.1scaffold_5:2095565-2095681+530250.33UGAAGUGUUUGGGGGAACUCCmiR395siRNA21miRBase21-BestBlastHit
tcc-MIR396e-m1Theobroma cacao (Cacao) 1.1scaffold_6:2612651-2612796.1,162548.83UUCCACAGCUUUCUUGAACUUmiR396siRNA21miRBase21-BestBlastHit
tcc-MIR399c-m1Theobroma cacao (Cacao) 1.1scaffold_6:23706487-23706632+10.47UGCCAAUGGAGAUUUGCCCAGmiR399siRNA21miRBase21-BestBlastHit
tcc-MIR172e-m1Theobroma cacao (Cacao) 1.1scaffold_9:41124929-41125117-404190.82AGAAUCUUGAUGAUGCUGCAUmiR172siRNA21miRBase21-BestBlastHit