het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Theobroma cacao (Cacao) genome build 1.1 (tcc-b1.1)

Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
tcc-MIR171h-m1Theobroma cacao (Cacao) 1.1scaffold_1:481519-481653-15070.85UAUUGGCCUGGUUCACUCAGAmiR171OtherRNAmiRBase21-BestBlastHit
tcc-MIR535-m1Theobroma cacao (Cacao) 1.1scaffold_1:15365300-15365419+598282.45GUGCUCUCUAUCGUUGUCAUAmiR535OtherRNAmiRBase21-BestBlastHit
tcc-MIR167a-m1Theobroma cacao (Cacao) 1.1scaffold_1:30570899-30571009-377178.06UGAAGCUGCCAGCAUGAUCmiR167OtherRNAmiRBase21-BestBlastHit
tcc-MIR167b-m1Theobroma cacao (Cacao) 1.1scaffold_1:30578963-30579099-330155.87UGAAGCUGCCAGCAUGAUCmiR167OtherRNAmiRBase21-BestBlastHit
tcc-MIR171f-m1Theobroma cacao (Cacao) 1.1scaffold_3:23756114-23756230+5325.03UUGAGCCGUGCCAAUAUCACGmiR171OtherRNAmiRBase21-BestBlastHit
tcc-MIR169d-m1Theobroma cacao (Cacao) 1.1scaffold_3:24116419-24116570+178.03UGGGCAGUCUCCUUUGGCUAUCmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR156f-m1Theobroma cacao (Cacao) 1.1scaffold_4:1544472-1544595-178.03UUGACAGAAGAUAGAGAGCACmiR156OtherRNAmiRBase21-BestBlastHit
tcc-MIR169j-m1Theobroma cacao (Cacao) 1.1scaffold_4:2880641-2880781+62.83UAGCCAAGGAUGACUmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR167c-m1Theobroma cacao (Cacao) 1.1scaffold_4:29860794-29860905+2,1581,019.26UGAAGCUGCCAGCAUGAUCUUmiR167OtherRNAmiRBase21-BestBlastHit
tcc-MIR160b-m1Theobroma cacao (Cacao) 1.1scaffold_5:2805464-2805583-4219.84UAUGCCUGGCUCCCUGUAUGCmiR160OtherRNAmiRBase21-BestBlastHit
tcc-MIR399d-m1Theobroma cacao (Cacao) 1.1scaffold_6:23710059-23710194.52.36AAGUGGGAGCCUGCCAmiR399OtherRNAmiRBase21-BestBlastHit
tcc-MIR394a-m1Theobroma cacao (Cacao) 1.1scaffold_8:2466007-2466126+52.36UUGGCAUUCUGUCCACCUCCCmiR394OtherRNAmiRBase21-BestBlastHit
tcc-MIR169k-m1Theobroma cacao (Cacao) 1.1scaffold_9:257574-257705+94.25CGGCUAGUUGUCCUUGGCmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR156c-m1Theobroma cacao (Cacao) 1.1scaffold_9:1627277-1627397-10851.01UGACAGAAGAGAGUGAGCACAmiR156OtherRNAmiRBase21-BestBlastHit
tcc-MIR169a-m1Theobroma cacao (Cacao) 1.1scaffold_9:25562377-25562523+41.89ACCAGCAACUCAUAUGUAGAGACmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR169g-m1Theobroma cacao (Cacao) 1.1scaffold_9:35687985-35688128+52.36CAGGCAGUCACCUUGGCUAUGUmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR172c-m1Theobroma cacao (Cacao) 1.1scaffold_9:39564240-39564402-41.89GGAAUCUUGAUGAUGCUGCAUmiR172OtherRNAmiRBase21-BestBlastHit