het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Theobroma cacao (Cacao) genome build 1.1 (tcc-b1.1)

Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
tcc-MIR166a-m1Theobroma cacao (Cacao) 1.1scaffold_1:29987851-29987968+1,386654.63UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
tcc-MIR164a-m1Theobroma cacao (Cacao) 1.1scaffold_1:32896077-32896204-115.20UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
tcc-MIR403a-m1Theobroma cacao (Cacao) 1.1scaffold_1:33727938-33728063+6731.65UUAGAUUCACGCACAAACUCGmiR403MIRNAmiRBase21-BestBlastHit
tcc-MIR172b-m1Theobroma cacao (Cacao) 1.1scaffold_10r:4747448-4747607-14066.13AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
tcc-MIR166b-m1Theobroma cacao (Cacao) 1.1scaffold_2:1993038-1993214-8,7704,142.24UCGGACCAGGCUUCAUUCCCUmiR166MIRNAmiRBase21-BestBlastHit
tcc-MIR394b-m1Theobroma cacao (Cacao) 1.1scaffold_2:2087619-2087743+312147.36UUGGCAUUCUGUCCACCUCCmiR394MIRNAmiRBase21-BestBlastHit
tcc-MIR162-m1Theobroma cacao (Cacao) 1.1scaffold_3:22612615-22612745-846399.58UCGAUAAACCUCUGCAUCCAGmiR162MIRNAmiRBase21-BestBlastHit
tcc-MIR393b-m1Theobroma cacao (Cacao) 1.1scaffold_3:26617286-26617443-209.45UCCAAAGGGAUCGCAUUGAUUUmiR393MIRNAmiRBase21-BestBlastHit
tcc-MIR399a-m1Theobroma cacao (Cacao) 1.1scaffold_3:31602451-31602586-5726.92CGCCAAAGGAGAGUUGCCCUGmiR399MIRNAmiRBase21-BestBlastHit
tcc-MIR168-m1Theobroma cacao (Cacao) 1.1scaffold_3:34130754-34130920+544256.94UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase21-BestBlastHit
tcc-MIR166d-m1Theobroma cacao (Cacao) 1.1scaffold_4:30265346-30265464-334157.75UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
tcc-MIR390a-m1Theobroma cacao (Cacao) 1.1scaffold_5:387450-387578-350165.31AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
tcc-MIR530a-m1Theobroma cacao (Cacao) 1.1scaffold_5:3339763-3339925+468221.05UGCAUUUGCACCUGCACCUCUmiR530MIRNAmiRBase21-BestBlastHit
tcc-MIR164b-m1Theobroma cacao (Cacao) 1.1scaffold_5:39510128-39510257+6229.28UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
tcc-MIR164c-m1Theobroma cacao (Cacao) 1.1scaffold_6:21296375-21296486+52.36UGGAGAAGCAGGGCACGUGCUmiR164MIRNAmiRBase21-BestBlastHit
tcc-MIR171d-m1Theobroma cacao (Cacao) 1.1scaffold_6:26335408-26335524-2712.75UUGAGCCGUGCCAAUAUCACGmiR171MIRNAmiRBase21-BestBlastHit
tcc-MIR171c-m1Theobroma cacao (Cacao) 1.1scaffold_9:7221552-7221674+146.61UUGAGCCGCGCCAAUAUCACUmiR171MIRNAmiRBase21-BestBlastHit
tcc-MIR396c-m1Theobroma cacao (Cacao) 1.1scaffold_9:7254590-7254741+8,9994,250.40UUCCACAGCUUUCUUGAACUUmiR396MIRNAmiRBase21-BestBlastHit
tcc-MIR396b-m1Theobroma cacao (Cacao) 1.1scaffold_9:7261228-7261378-3,6781,737.19UUCCACAGCUUUCUUGAACUmiR396MIRNAmiRBase21-BestBlastHit
tcc-MIR169n-m1Theobroma cacao (Cacao) 1.1scaffold_9:18854925-18855066+104.72UUCGCUCUCUUUUCUUUCAUGMIRNAmiRBase21-BestBlastHit
tcc-MIR390b-m1Theobroma cacao (Cacao) 1.1scaffold_9:41586925-41587044+2511.81AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit