het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Theobroma cacao (Cacao) genome build 1.1 (tcc-b1.1)

Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database


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Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
tcc-MIR171h-m1Theobroma cacao (Cacao) 1.1scaffold_1:481519-481653-15070.85UAUUGGCCUGGUUCACUCAGAmiR171OtherRNAmiRBase21-BestBlastHit
tcc-MIR399e-m1Theobroma cacao (Cacao) 1.1scaffold_1:9344729-9344845-10.47CGCCAAAGGAGAAUUGCCCUGmiR399siRNA21miRBase21-BestBlastHit
tcc-MIR399f-m1Theobroma cacao (Cacao) 1.1scaffold_1:9349938-935004800.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR399g-m1Theobroma cacao (Cacao) 1.1scaffold_1:9353757-935386800.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR399h-m1Theobroma cacao (Cacao) 1.1scaffold_1:9356233-935634900.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR160c-m1Theobroma cacao (Cacao) 1.1scaffold_1:14143911-14144030-10.47UCUGCCUGGCUCCCUGGAUGCAmiR160siRNA22miRBase21-BestBlastHit
tcc-MIR535-m1Theobroma cacao (Cacao) 1.1scaffold_1:15365300-15365419+598282.45GUGCUCUCUAUCGUUGUCAUAmiR535OtherRNAmiRBase21-BestBlastHit
tcc-MIR166a-m1Theobroma cacao (Cacao) 1.1scaffold_1:29987851-29987968+1,386654.63UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
tcc-MIR167a-m1Theobroma cacao (Cacao) 1.1scaffold_1:30570899-30571009-377178.06UGAAGCUGCCAGCAUGAUCmiR167OtherRNAmiRBase21-BestBlastHit
tcc-MIR167b-m1Theobroma cacao (Cacao) 1.1scaffold_1:30578963-30579099-330155.87UGAAGCUGCCAGCAUGAUCmiR167OtherRNAmiRBase21-BestBlastHit
tcc-MIR164a-m1Theobroma cacao (Cacao) 1.1scaffold_1:32896077-32896204-115.20UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
tcc-MIR403a-m1Theobroma cacao (Cacao) 1.1scaffold_1:33727938-33728063+6731.65UUAGAUUCACGCACAAACUCGmiR403MIRNAmiRBase21-BestBlastHit
tcc-MIR393a-m1Theobroma cacao (Cacao) 1.1scaffold_10r:1493623-1493740-188.50UCCAAAGGGAUCGCAUUGAUCmiR393nearMIRNAmiRBase21-BestBlastHit
tcc-MIR172a-m1Theobroma cacao (Cacao) 1.1scaffold_10r:1900831-190098400.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR172b-m1Theobroma cacao (Cacao) 1.1scaffold_10r:4747448-4747607-14066.13AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
tcc-MIR166b-m1Theobroma cacao (Cacao) 1.1scaffold_2:1993038-1993214-8,7704,142.24UCGGACCAGGCUUCAUUCCCUmiR166MIRNAmiRBase21-BestBlastHit
tcc-MIR394b-m1Theobroma cacao (Cacao) 1.1scaffold_2:2087619-2087743+312147.36UUGGCAUUCUGUCCACCUCCmiR394MIRNAmiRBase21-BestBlastHit
tcc-MIR396d-m1Theobroma cacao (Cacao) 1.1scaffold_2:8719597-8719778-522246.55UUCCACGGCUUUCUUGAACUUmiR396nearMIRNAmiRBase21-BestBlastHit
tcc-MIR398b-m1Theobroma cacao (Cacao) 1.1scaffold_2:40851275-40851439+178.03UGUGUUCUCAGGUCACCCCUUmiR398siRNA21miRBase21-BestBlastHit
tcc-MIR395a-m1Theobroma cacao (Cacao) 1.1scaffold_2:41727031-41727153+10348.65UGAAGUGUUUGGGGGAACUCCmiR395siRNA21miRBase21-BestBlastHit
tcc-MIR171a-m1Theobroma cacao (Cacao) 1.1scaffold_3:7376825-737694300.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR162-m1Theobroma cacao (Cacao) 1.1scaffold_3:22612615-22612745-846399.58UCGAUAAACCUCUGCAUCCAGmiR162MIRNAmiRBase21-BestBlastHit
tcc-MIR171f-m1Theobroma cacao (Cacao) 1.1scaffold_3:23756114-23756230+5325.03UUGAGCCGUGCCAAUAUCACGmiR171OtherRNAmiRBase21-BestBlastHit
tcc-MIR169d-m1Theobroma cacao (Cacao) 1.1scaffold_3:24116419-24116570+178.03UGGGCAGUCUCCUUUGGCUAUCmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR399i-m1Theobroma cacao (Cacao) 1.1scaffold_3:25998257-25998413-41.89UUGCCCUGUGACUGAUUCAGUsiRNA21miRBase21-BestBlastHit
tcc-MIR393b-m1Theobroma cacao (Cacao) 1.1scaffold_3:26617286-26617443-209.45UCCAAAGGGAUCGCAUUGAUUUmiR393MIRNAmiRBase21-BestBlastHit
tcc-MIR399a-m1Theobroma cacao (Cacao) 1.1scaffold_3:31602451-31602586-5726.92CGCCAAAGGAGAGUUGCCCUGmiR399MIRNAmiRBase21-BestBlastHit
tcc-MIR168-m1Theobroma cacao (Cacao) 1.1scaffold_3:34130754-34130920+544256.94UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase21-BestBlastHit
tcc-MIR156f-m1Theobroma cacao (Cacao) 1.1scaffold_4:1544472-1544595-178.03UUGACAGAAGAUAGAGAGCACmiR156OtherRNAmiRBase21-BestBlastHit
tcc-MIR171g-m1Theobroma cacao (Cacao) 1.1scaffold_4:2531715-2531829+125.67UUGAGCCGUGCCAAUAUCACAmiR171nearMIRNAmiRBase21-BestBlastHit
tcc-MIR169i-m1Theobroma cacao (Cacao) 1.1scaffold_4:2880399-2880513+62.83UAGCCAAGGAUGAGUUGCCUGmiR169siRNA21miRBase21-BestBlastHit
tcc-MIR169j-m1Theobroma cacao (Cacao) 1.1scaffold_4:2880641-2880781+62.83UAGCCAAGGAUGACUmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR169b-m1Theobroma cacao (Cacao) 1.1scaffold_4:16636798-1663699000.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR156e-m1Theobroma cacao (Cacao) 1.1scaffold_4:21987408-2198753000.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR398a-m1Theobroma cacao (Cacao) 1.1scaffold_4:26691422-26691546+3717.48UGUGUUCUCAGGUCGCCCCUGmiR398nearMIRNAmiRBase21-BestBlastHit
tcc-MIR167c-m1Theobroma cacao (Cacao) 1.1scaffold_4:29860794-29860905+2,1581,019.26UGAAGCUGCCAGCAUGAUCUUmiR167OtherRNAmiRBase21-BestBlastHit
tcc-MIR166d-m1Theobroma cacao (Cacao) 1.1scaffold_4:30265346-30265464-334157.75UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
tcc-MIR403b-m1Theobroma cacao (Cacao) 1.1scaffold_4:32849335-32849457-14970.38UUAGAUUCACGCACAAACUCGmiR403nearMIRNAmiRBase21-BestBlastHit
tcc-MIR827-m1Theobroma cacao (Cacao) 1.1scaffold_5:101420-101567+104.72UUUGUUGAUGGUCAUCUUGUCmiR827nearMIRNAmiRBase21-BestBlastHit
tcc-MIR390a-m1Theobroma cacao (Cacao) 1.1scaffold_5:387450-387578-350165.31AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
tcc-MIR2111-m1Theobroma cacao (Cacao) 1.1scaffold_5:1418163-1418273+20.95UAAUCUGCAUCCUGAGGUUUUmiR2111siRNA21miRBase21-BestBlastHit
tcc-MIR395b-m1Theobroma cacao (Cacao) 1.1scaffold_5:2095565-2095681+530250.33UGAAGUGUUUGGGGGAACUCCmiR395siRNA21miRBase21-BestBlastHit
tcc-MIR160b-m1Theobroma cacao (Cacao) 1.1scaffold_5:2805464-2805583-4219.84UAUGCCUGGCUCCCUGUAUGCmiR160OtherRNAmiRBase21-BestBlastHit
tcc-MIR172d-m1Theobroma cacao (Cacao) 1.1scaffold_5:3119451-3119579-420198.37AGAAUCCUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
tcc-MIR530a-m1Theobroma cacao (Cacao) 1.1scaffold_5:3339763-3339925+468221.05UGCAUUUGCACCUGCACCUCUmiR530MIRNAmiRBase21-BestBlastHit
tcc-MIR166c-m1Theobroma cacao (Cacao) 1.1scaffold_5:35344431-35344571+239112.88UCGGACCAGGCUUCAUUCCUmiR166nearMIRNAmiRBase21-BestBlastHit
tcc-MIR169c-m1Theobroma cacao (Cacao) 1.1scaffold_5:36120234-3612037500.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR164b-m1Theobroma cacao (Cacao) 1.1scaffold_5:39510128-39510257+6229.28UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
tcc-MIR171b-m1Theobroma cacao (Cacao) 1.1scaffold_6:2319746-231986700.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR396e-m1Theobroma cacao (Cacao) 1.1scaffold_6:2612651-2612796.1,162548.83UUCCACAGCUUUCUUGAACUUmiR396siRNA21miRBase21-BestBlastHit
tcc-MIR169e-m1Theobroma cacao (Cacao) 1.1scaffold_6:2725865-272601100.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR164c-m1Theobroma cacao (Cacao) 1.1scaffold_6:21296375-21296486+52.36UGGAGAAGCAGGGCACGUGCUmiR164MIRNAmiRBase21-BestBlastHit
tcc-MIR399b-m1Theobroma cacao (Cacao) 1.1scaffold_6:23703942-2370407600.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR399c-m1Theobroma cacao (Cacao) 1.1scaffold_6:23706487-23706632+10.47UGCCAAUGGAGAUUUGCCCAGmiR399siRNA21miRBase21-BestBlastHit
tcc-MIR399d-m1Theobroma cacao (Cacao) 1.1scaffold_6:23710059-23710194.52.36AAGUGGGAGCCUGCCAmiR399OtherRNAmiRBase21-BestBlastHit
tcc-MIR397-m1Theobroma cacao (Cacao) 1.1scaffold_6:25407930-2540805200.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR171d-m1Theobroma cacao (Cacao) 1.1scaffold_6:26335408-26335524-2712.75UUGAGCCGUGCCAAUAUCACGmiR171MIRNAmiRBase21-BestBlastHit
tcc-MIR156a-m1Theobroma cacao (Cacao) 1.1scaffold_7:621194-62131700.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR171e-m1Theobroma cacao (Cacao) 1.1scaffold_8:2406877-2407037-16778.88CUACGAUGUUGGCUCGGUUCAmiR171nearMIRNAmiRBase21-BestBlastHit
tcc-MIR394a-m1Theobroma cacao (Cacao) 1.1scaffold_8:2466007-2466126+52.36UUGGCAUUCUGUCCACCUCCCmiR394OtherRNAmiRBase21-BestBlastHit
tcc-MIR169k-m1Theobroma cacao (Cacao) 1.1scaffold_9:257574-257705+94.25CGGCUAGUUGUCCUUGGCmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR169l-m1Theobroma cacao (Cacao) 1.1scaffold_9:257807-257928+52.36UGGAGAGGUAGAGAAUUUAGUGsiRNA22miRBase21-BestBlastHit
tcc-MIR156g-m1Theobroma cacao (Cacao) 1.1scaffold_9:851020-85113900.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR396a-m1Theobroma cacao (Cacao) 1.1scaffold_9:1215330-1215475+17281.24UUCCACAGCUUUCUUGAACUmiR396nearMIRNAmiRBase21-BestBlastHit
tcc-MIR156c-m1Theobroma cacao (Cacao) 1.1scaffold_9:1627277-1627397-10851.01UGACAGAAGAGAGUGAGCACAmiR156OtherRNAmiRBase21-BestBlastHit
tcc-MIR156b-m1Theobroma cacao (Cacao) 1.1scaffold_9:2892913-289304100.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR156d-m1Theobroma cacao (Cacao) 1.1scaffold_9:4456679-445680300.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR171c-m1Theobroma cacao (Cacao) 1.1scaffold_9:7221552-7221674+146.61UUGAGCCGCGCCAAUAUCACUmiR171MIRNAmiRBase21-BestBlastHit
tcc-MIR396c-m1Theobroma cacao (Cacao) 1.1scaffold_9:7254590-7254741+8,9994,250.40UUCCACAGCUUUCUUGAACUUmiR396MIRNAmiRBase21-BestBlastHit
tcc-MIR396b-m1Theobroma cacao (Cacao) 1.1scaffold_9:7261228-7261378-3,6781,737.19UUCCACAGCUUUCUUGAACUmiR396MIRNAmiRBase21-BestBlastHit
tcc-MIR319-m1Theobroma cacao (Cacao) 1.1scaffold_9:8935155-8935287+10047.23UUUGGAUUGAAGGGAGCUCCUmiR159nearMIRNAmiRBase21-BestBlastHit
tcc-MIR169n-m1Theobroma cacao (Cacao) 1.1scaffold_9:18854925-18855066+104.72UUCGCUCUCUUUUCUUUCAUGMIRNAmiRBase21-BestBlastHit
tcc-MIR169m-m1Theobroma cacao (Cacao) 1.1scaffold_9:18860726-1886085000.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR169a-m1Theobroma cacao (Cacao) 1.1scaffold_9:25562377-25562523+41.89ACCAGCAACUCAUAUGUAGAGACmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR160a-m1Theobroma cacao (Cacao) 1.1scaffold_9:34637500-34637621-6028.34UGCCUGGCUCCCUGAAUGCCAmiR160nearMIRNAmiRBase21-BestBlastHit
tcc-MIR169f-m1Theobroma cacao (Cacao) 1.1scaffold_9:35685897-3568603700.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR169g-m1Theobroma cacao (Cacao) 1.1scaffold_9:35687985-35688128+52.36CAGGCAGUCACCUUGGCUAUGUmiR169OtherRNAmiRBase21-BestBlastHit
tcc-MIR169h-m1Theobroma cacao (Cacao) 1.1scaffold_9:35699180-3569931400.00NotExpressedmiRBase21-BestBlastHit
tcc-MIR172c-m1Theobroma cacao (Cacao) 1.1scaffold_9:39564240-39564402-41.89GGAAUCUUGAUGAUGCUGCAUmiR172OtherRNAmiRBase21-BestBlastHit
tcc-MIR172e-m1Theobroma cacao (Cacao) 1.1scaffold_9:41124929-41125117-404190.82AGAAUCUUGAUGAUGCUGCAUmiR172siRNA21miRBase21-BestBlastHit
tcc-MIR530b-m1Theobroma cacao (Cacao) 1.1scaffold_9:41222141-41222318+178.03UGCAUUUGCACCUGCACCUUCmiR530nearMIRNAmiRBase21-BestBlastHit
tcc-MIR390b-m1Theobroma cacao (Cacao) 1.1scaffold_9:41586925-41587044+2511.81AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit