het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Nicotiana tabacum (Tobacco) genome build 0 (nta-b0)

Version v0 of Nicotiana tabacum cv. K326 from The Sol Genomics Network

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
nta-MIR172a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1000:20456-20597-430.22AGAAUCUUGAUGAUGCUGCAGmiR172MIRNAmiRBase21-BestBlastHit
nta-MIR172b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS10003:304385-304513-4062.03AGAAUCAUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
nta-MIR156f-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS10343:32241-32353-53,754268.24UGACAGAAGAGAAUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
nta-MIR168a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS10474:494531-494698+22,494112.25CCCGCCUUGCAUCAACUGAAUmiR168MIRNAmiRBase21-BestBlastHit
nta-MIR6149a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS10540:662803-662901+185,452925.44UUGAUACGCACCUGAAUCGGCmiR6149MIRNAmiRBase21-BestBlastHit
nta-MIR167b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS10803:339951-340177-5,79728.93UGAAGCUGCCAGCAUGAUCUGGmiR167MIRNAmiRBase21-BestBlastHit
nta-MIR167c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS10803:339951-340177-5,79728.93UGAAGCUGCCAGCAUGAUCUGGmiR167MIRNAmiRBase21-BestBlastHit
nta-MIR168c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS11511:104166-104300+226,8161,131.86UCGCUUGGUGCAGGUCGGGACmiR168MIRNAmiRBase21-BestBlastHit
nta-MIR6145d-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS11774:153662-153742-2,19210.94AUUGUUACAUGUAACACUGGCmiR6145MIRNAmiRBase21-BestBlastHit
nta-MIR477a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1192:790573-790673-4872.43ACUCUCCCUCAAGGGCUUCUGGCmiR477MIRNAmiRBase21-BestBlastHit
nta-MIR827-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1223:85226-85324-6793.39UUAGAUGAACAUCAACAAACAmiR827MIRNAmiRBase21-BestBlastHit
nta-MIR156j-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS12396:197550-197664-4,791,88723,912.51UUGACAGAAGAUAGAGAGCACmiR156MIRNAmiRBase21-BestBlastHit
nta-MIR398-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS126:80340-80450-3,54617.70GGGGCAAUCUGAGAUCACAUGmiR398MIRNAmiRBase21-BestBlastHit
nta-MIR164a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS13028:59554-59771-5092.54UCAAGAUGGAGAAGCAGGGCAmiR164MIRNAmiRBase21-BestBlastHit
nta-MIR164b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS13028:59554-59771-5092.54UCAAGAUGGAGAAGCAGGGCAmiR164MIRNAmiRBase21-BestBlastHit
nta-MIR172j-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS133:2117441-2117676+7333.66GGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
nta-MIR166d-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS13518:57377-57568-2,64313.19UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
nta-MIR172c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1357:275804-275920-9,19245.87AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
nta-MIR390a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS14423:539048-539155+2,88514.40AAGCUCAGGAGGGAUAGCACCmiR390MIRNAmiRBase21-BestBlastHit
nta-MIR166e-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1494:116209-116386-455,0862,270.97UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
nta-MIR167d-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS15899:33489-33588+101,320505.61UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase21-BestBlastHit
nta-MIR171c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS166703:27-136+6,63233.10AGGUAUUGGCCUGGUUCACUCmiR171MIRNAmiRBase21-BestBlastHit
nta-MIR6148b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS16731:45609-45671-8314.15UGUGUUAAUCGUUUGUUCUCAmiR6148MIRNAmiRBase21-BestBlastHit
nta-MIR156h-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS172:386278-386389-761,5993,800.54UUGACAGAAGAUAGAGAGCACmiR156MIRNAmiRBase21-BestBlastHit
nta-MIR827-m2Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18025:297857-297955+7233.61UUAGAUGAACAUCAACAAACAmiR827MIRNAmiRBase21-BestBlastHit
nta-MIR6145b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18068:78782-78861-7,04535.16UAUUAUCAUACGUAGCACUAGCmiR6145MIRNAmiRBase21-BestBlastHit
nta-MIR160c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18130:244949-245058-1,6078.02UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAmiRBase21-BestBlastHit
nta-MIR6145e-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18222:220687-220766+6,65533.21AUUGUUACAUGUAGCACUGGCUmiR6145MIRNAmiRBase21-BestBlastHit
nta-MIR156g-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18348:304885-305033-34,509172.21UUGACAGAAGAUAGAGAGCACmiR156MIRNAmiRBase21-BestBlastHit
nta-MIR156c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18834:508148-508254+98,329490.68UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
nta-MIR396b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18863:86341-86480+60,769303.25UUCCACAGCUUUCUUGAACUUmiR396MIRNAmiRBase21-BestBlastHit
nta-MIR1919-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1888:33541-33688+15,75878.64UGUCGCAGAUGACUUUCGCCCUUmiR1919MIRNAmiRBase21-BestBlastHit
nta-MIR167e-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS18995:207591-207683+237,3891,184.62UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase21-BestBlastHit
nta-MIR1446-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19071:26069-26175+15,38476.77UGAACUCUCUCCCUCAAUGGCUmiR1446MIRNAmiRBase21-BestBlastHit
nta-MIR479a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19226:61903-62001+5,81629.02UGAGCCGGACCAAUAUCACUCmiR479MIRNAmiRBase21-BestBlastHit
nta-MIR6019a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19248:1367-1478+13,49967.36UACAGGUGACUUGUAAAUGUUUmiR6019MIRNAmiRBase21-BestBlastHit
nta-MIR172d-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19498:150574-150699+3,40016.97AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
nta-MIR172f-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19498:150659-150848+3,10115.48AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
nta-MIR172h-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19498:150809-150922+3,27016.32AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
nta-MIR482c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS1951:6142-6229+14,14470.58UUUCCAAUUCCACCCAUUCCUAmiR482MIRNAmiRBase21-BestBlastHit
nta-MIR167a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19692:42813-43085+2,31511.55UGAAGCUGCCAGCAUGAUCUGGmiR167MIRNAmiRBase21-BestBlastHit
nta-MIR166a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19723:57966-58149-2,34211.69UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
nta-MIR482b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS19778:577336-577449+21,033104.96AGUGGGUGGAGUGGUAAGAUAmiR482MIRNAmiRBase21-BestBlastHit
nta-MIR6145a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS20100:283090-283171+3,60818.01CGGUGCUCAUGUGAAGGUGACmiR6145MIRNAmiRBase21-BestBlastHit
nta-MIR166f-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS2094:97443-97597-9,72348.52GGAAUGUUGUCUGGCUCGAAGmiR166MIRNAmiRBase21-BestBlastHit
nta-MIR482d-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS252041:12239-12338-7,01835.02UUCCCGACUCCCCCCAUACCACmiR482MIRNAmiRBase21-BestBlastHit
nta-MIR6159-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS307994:20760-20862+2,99914.97UAGCAUAGAAUUCUCGCACCUAmiR6159MIRNAmiRBase21-BestBlastHit
nta-MIR6153-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS326067:4733-4836+17,43286.99UAGGACCAUAUUCACUAUUUGmiR6153MIRNAmiRBase21-BestBlastHit
nta-MIR319b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS3740:373036-373230-5872.93AGCUGCCGACUCAUUCAUUCAmiR319MIRNAmiRBase21-BestBlastHit
nta-MIR160d-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS376056:2302-2411+3,02115.08GCGUGCGAGGAGCCAAGCAUAmiR160MIRNAmiRBase21-BestBlastHit
nta-MIR6144-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS376872:11901-12036+2,22211.09UGGCAACUUCUUCAUCAUGCCmiR6144MIRNAmiRBase21-BestBlastHit
nta-MIR156i-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS377652:722-837-831,8814,151.26UUGACAGAAGAUAGAGAGCACmiR156MIRNAmiRBase21-BestBlastHit
nta-MIR6149b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS388:463806-463893+727,5853,630.80UUGAUACGCACCUGAAUCGGCmiR6149MIRNAmiRBase21-BestBlastHit
nta-MIR162a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS389:310559-310665+4,81224.01UCGAUAAACCUCUGCAUCCAGmiR162MIRNAmiRBase21-BestBlastHit
nta-MIR156b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS41165:82991-83101-549,5652,742.44UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
nta-MIR172i-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS4175:379433-379541+1,6668.31AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
nta-MIR6024-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS424:110806-110927+2,42712.11UUUUAGCCAGAGUUGUUUUCCCmiR6024MIRNAmiRBase21-BestBlastHit
nta-MIR396a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS4846:131027-131165-12,55862.67UUCCACAGCUUUCUUGAACUGmiR396MIRNAmiRBase21-BestBlastHit
nta-MIR6025c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS5139:911573-911731-7,34536.65UCAAUUGAGAUGACAUCUAGUmiR6025MIRNAmiRBase21-BestBlastHit
nta-MIR479b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS5525:252006-252104-2,74013.67UGAGCCGAACCAAUAUCACUCmiR171MIRNAmiRBase21-BestBlastHit
nta-MIR390c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS589:193463-193570+1,6838.40AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
nta-MIR390b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS589:193464-193571+1,6838.40AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
nta-MIR166c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS58925:14924-15028-2,73113.63UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
nta-MIR397-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS615:462460-462581+26,979134.63UCAUUGAGUGCAGCGUUGAUGmiR397MIRNAmiRBase21-BestBlastHit
nta-MIR6145f-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS631:301066-301146-1,2216.09AUCGUAACAUAUAGCACUAGCmiR6145MIRNAmiRBase21-BestBlastHit
nta-MIR6146a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS6363:335212-335292-2,10510.50UUUGUCCAAUGAAACACUUAUCmiR6146MIRNAmiRBase21-BestBlastHit
nta-MIR171a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS6810:130412-130506+1,8519.24UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAmiRBase21-BestBlastHit
nta-MIR6025b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS736:2121529-2121691+42,100210.09UGCCAACUAUUGAGAUGACAUCmiR6025MIRNAmiRBase21-BestBlastHit
nta-MIR6025e-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS736:2121540-2121685+42,099210.08UGCCAACUAUUGAGAUGACAUCmiR6025MIRNAmiRBase21-BestBlastHit
nta-MIR168b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7399:227411-227567-549,4972,742.10UCGCUUGGUGCAGGUCGGGACmiR168MIRNAmiRBase21-BestBlastHit
nta-MIR6154a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7752:348693-348773-3,93019.61UGGGUCUCCUGGAGAAAGGUCmiR6154MIRNAmiRBase21-BestBlastHit
nta-MIR6154b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7752:348694-348768-3,93019.61UGGGUCUCCUGGAGAAAGGUCmiR6154MIRNAmiRBase21-BestBlastHit
nta-MIR6146b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7778:344504-344584+15,84679.08UUUGUCCAAUGAAAUACUUAUCmiR6146MIRNAmiRBase21-BestBlastHit
nta-MIR6147-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS7969:168311-168414+19,59597.78GUGGGUAUUGAAGAUGUUAUGmiR6147MIRNAmiRBase21-BestBlastHit
nta-MIR482a-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS8184:732226-732329+14,56872.70UUUCCAAUUCCACCCAUUCCUAmiR482MIRNAmiRBase21-BestBlastHit
nta-MIR396c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS8695:5638-5765-3,06915.32UUCCACAGCUUUCUUGAACUUmiR396MIRNAmiRBase21-BestBlastHit
nta-MIR164c-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS8772:187948-188045-1680.84UGGAGAAGCAGGGCACAUGCUmiR164MIRNAmiRBase21-BestBlastHit
nta-MIR166g-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS8866:313654-313767-111,718557.50UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
nta-MIR162b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS9201:82631-82725-4,07320.33UCGAUAAACCUCUGCAUCCAGmiR162MIRNAmiRBase21-BestBlastHit
nta-MIR166h-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS9648:34769-34920-8,19140.88GGAAUGUUGUUUGGCUCGAGGmiR166MIRNAmiRBase21-BestBlastHit
nta-MIR6020b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS9754:770031-770147+8,18540.85AAAUGUUCUUCGAGUAUCUUCmiR6020MIRNAmiRBase21-BestBlastHit
nta-MIR6019b-m1Nicotiana tabacum (Tobacco) 0Ntab-K326_AWOJ-SS9754:770250-770367+9,61047.96UACAGGUGACUUGUAAAUGUUUmiR6019MIRNAmiRBase21-BestBlastHit