het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Oryza sativa (Rice) genome build 1.0 (osa-b1.0)

Version IRGSP-1.0 of Oryza sativa ssp. Japonica cv. Nipponbare from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
osa-MIR1860Oryza sativa (Rice) 1.01:934420-934567-22,99213.28AUCUGGAAGCUAGGUUUUCUCUmiR1860siRNA22miRBase21
osa-MIR1846dOryza sativa (Rice) 1.01:39637065-39637180+5,5733.22UCCCACCGAGCAGCCGGAUCUCmiR1846siRNA22miRBase21
osa-MIR398aOryza sativa (Rice) 1.010:9216250-9216364-7,0174.05GGAGUGGUACUGAGAACACAGGmiR398siRNA22miRBase21
osa-MIR1861nOryza sativa (Rice) 1.012:16586544-16586672.1,4050.81CGGUUCCUGUCCCAAGAUCGAGmiR1861siRNA22miRBase21
osa-MIR1861bOryza sativa (Rice) 1.02:20715962-20716079+1,6150.93CGAUCUUGAGGCAGGAACUGAGmiR1861siRNA22miRBase21
osa-MIR1861cOryza sativa (Rice) 1.02:20716174-20716280.4480.26CGAUCUUGUAGCAAGAACUGAGmiR1861siRNA22miRBase21
osa-MIR1861dOryza sativa (Rice) 1.04:6536337-6536454+5190.30UGGUCUUGAGGCAGGAACUGAGmiR1861siRNA22miRBase21
osa-MIR2118eOryza sativa (Rice) 1.04:21647428-21647604.13,5037.80UUCCCAAUGCCUCCCAUGCCUAmiR2118siRNA22miRBase21
osa-MIR2118gOryza sativa (Rice) 1.04:21650301-21650460.9,4695.47UUCCUAAUGCCUCCCAUUCCUAmiR2118siRNA22miRBase21
osa-MIR2118hOryza sativa (Rice) 1.04:21652652-21652808.6,5403.78UUCCUGAUGCCUCUCAUUCCUAmiR2118siRNA22miRBase21
osa-MIR2118mOryza sativa (Rice) 1.04:21658851-21659020.4,8362.79UUCCUGAUGCCUCCCAUUCCUAmiR2118siRNA22miRBase21
osa-MIR2926Oryza sativa (Rice) 1.06:11402605-11402724.70.00GUUCGCGGGUAAGGACGGUGGUsiRNA22miRBase21
osa-MIR1861iOryza sativa (Rice) 1.06:14949509-14949600+6990.40CGAUCUUGAGGCAGGAACUGAGmiR1861siRNA22miRBase21
osa-MIR2876Oryza sativa (Rice) 1.06:17008975-17009155-40,09923.16UUCCUAUAUGAACACUGUUGCCmiR2876siRNA22miRBase21
osa-MIR1861kOryza sativa (Rice) 1.08:15132529-15132620.5420.31CGGUCUUGUGGCAAGAACUGAGmiR1861siRNA22miRBase21