het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Oryza sativa (Rice) genome build 1.0 (osa-b1.0)

Version IRGSP-1.0 of Oryza sativa ssp. Japonica cv. Nipponbare from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
osa-MIR531bOryza sativa (Rice) 1.01:833931-833999-17,91010.35CUCGCCGGGGCUGCGUGCCGCCAmiR531OtherRNAmiRBase21
osa-MIR2925Oryza sativa (Rice) 1.01:25801058-25801177-1,2490.72AAUGGCUUCUCUGAAGGCmiR2925OtherRNAmiRBase21
osa-MIR1435Oryza sativa (Rice) 1.01:29289280-29289462.50.00UUAAGAAAAGUCAAAACUACOtherRNAmiRBase21
osa-MIR2927Oryza sativa (Rice) 1.01:37098081-37098230-610.04UCAGCUUCAUGCUCGCCGGCCmiR2927OtherRNAmiRBase21
osa-MIR5083Oryza sativa (Rice) 1.01:41010573-41010952-94,68354.70AAUGGAUCCUUCUGAGCCUmiR5083OtherRNAmiRBase21
osa-MIR5076Oryza sativa (Rice) 1.01:43208622-43208850.2100.12UCUUGACUCGAAAUGGGAGCAmiR5076OtherRNAmiRBase21
osa-MIR5080Oryza sativa (Rice) 1.010:2322020-2322108-3640.21GUUACUUUGAAGAAAmiR5080OtherRNAmiRBase21
osa-MIR5079bOryza sativa (Rice) 1.010:10915695-10916100.350.02GAUAGAUCUAAUUAGACUCUUUmiR5079OtherRNAmiRBase21
osa-MIR5504Oryza sativa (Rice) 1.010:17228165-17228262-2,3361.35AGUGACGGGAGGACUGCAmiR5504OtherRNAmiRBase21
osa-MIR5538Oryza sativa (Rice) 1.010:21337283-21337405.4,2672.47ACAGAAAACUGUUGAGUAACGGCAmiR5538OtherRNAmiRBase21
osa-MIR2922Oryza sativa (Rice) 1.010:22684220-22684359.230.01AAAUGCUAGAGAUCCUGCCAAGAUUGUOtherRNAmiRBase21
osa-MIR5082Oryza sativa (Rice) 1.011:1286146-1286686+2,1071.22GAGCGAUGACGACUGCCCGCGGUCGGAGCGCGUGCGAUGAUGGCCGCGCGGGUUmiR5082OtherRNAmiRBase21
osa-MIR2907bOryza sativa (Rice) 1.011:7278025-7278089+2110.12AAGGCGCUUGAGAGAACOtherRNAmiRBase21
osa-MIR2118qOryza sativa (Rice) 1.011:7810709-7810885.5,2403.03AAGAUCGGUAGGAAUAGGAGGCAUCmiR2118OtherRNAmiRBase21
osa-MIR5075Oryza sativa (Rice) 1.011:7878336-7878823-1,4990.87CGCCAUCGAGGACUCCGACGGmiR5075OtherRNAmiRBase21
osa-MIR3979Oryza sativa (Rice) 1.011:19480150-19480263+168,46997.32CUUCGGGGGAGGAGAGAAGCmiR3979OtherRNAmiRBase21
osa-MIR2923Oryza sativa (Rice) 1.011:21507096-21507270-370.02UCUGGAGUAUGUUCAUAAUAGGCAGGmiR2923OtherRNAmiRBase21
osa-MIR531cOryza sativa (Rice) 1.011:26930675-26930755+1230.07CUCGCCGGGGCUGCGUGCCGCCAmiR531OtherRNAmiRBase21
osa-MIR1846bOryza sativa (Rice) 1.011:27715822-27715933-4830.28AGUGAGGAGGCCGGGGCCGCUmiR1846OtherRNAmiRBase21
osa-MIR2105Oryza sativa (Rice) 1.012:4602439-4602521+260.02GGAUGAUACUUUGAUUUOtherRNAmiRBase21
osa-MIR1863cOryza sativa (Rice) 1.012:4869207-4869497+4,8392.80UAGAAACUUGGCUGAUGCAUUACUmiR1863OtherRNAmiRBase21
osa-MIR5810Oryza sativa (Rice) 1.012:7333292-7333419-520.03ACGGAACCCUAAUGGCGAUGGCAUmiR5810OtherRNAmiRBase21
osa-MIR413Oryza sativa (Rice) 1.012:10136381-10136493-310.02UCCUUAGAUGUCUGACUOtherRNAmiRBase21
osa-MIR5505Oryza sativa (Rice) 1.012:13389006-13389213+5680.33GAGGAUUCGGUAUUGAUCGCUAmiR5505OtherRNAmiRBase21
osa-MIR5539aOryza sativa (Rice) 1.012:20548894-20548969+650.04ACCAUUUUAUGAAAACUCUUGUUCOtherRNAmiRBase21
osa-MIR5539bOryza sativa (Rice) 1.012:20553788-20553863+470.03UUUGAAUCAAUGGGUmiR6224OtherRNAmiRBase21
osa-MIR415Oryza sativa (Rice) 1.012:26270477-26270620+240.01UCUGUUUCUGCUCUGUAAAACUmiR415OtherRNAmiRBase21
osa-MIR2863bOryza sativa (Rice) 1.02:4195665-4195765-9,0205.21UGACCCGUGGAUACUCUUUUACCCACOtherRNAmiRBase21
osa-MIR2928Oryza sativa (Rice) 1.02:6535928-6536127.230.01UUUUUAACAAAGUCUGACCUUmiR2928OtherRNAmiRBase21
osa-MIR5493Oryza sativa (Rice) 1.02:22898044-22898300+5,0842.94AGCCGGGCUCGGUCGCGCGUGCCUGUUACUCCAGCUOtherRNAmiRBase21
osa-MIR2106Oryza sativa (Rice) 1.02:23768609-23768694-6,5403.78CCCGUGAUCUGGCCGAGGUUUUCUGGAUACAUUCmiR2106OtherRNAmiRBase21
osa-MIR168bOryza sativa (Rice) 1.02:27336428-27336533-3270.19UCCUGCCAGUCCAUCAAGAACAGUUCCCGAGCUmiR168OtherRNAmiRBase21
osa-MIR396hOryza sativa (Rice) 1.02:32841661-32841801+1,6190.94CAGGCUUUCUUGAACGGmiR396OtherRNAmiRBase21
osa-MIR396aOryza sativa (Rice) 1.02:34280384-34280537+15,0768.71UUCCACAGCUUUCUUGAACUGmiR396OtherRNAmiRBase21
osa-MIR418Oryza sativa (Rice) 1.02:35182622-35182703.180.01AAAGUUGAGCUCUGGUGACUGGUGOtherRNAmiRBase21
osa-MIR396fOryza sativa (Rice) 1.02:35636546-35636721-8,078,6734,666.77CAGGCUUUCUUGAACUGmiR396OtherRNAmiRBase21
osa-MIR6256Oryza sativa (Rice) 1.03:1235626-1235795-1910.11UCGAGAACUGGUUUGUAGUACUmiR6256OtherRNAmiRBase21
osa-MIR5531Oryza sativa (Rice) 1.03:10288528-10288615+390.02AGGAGUAUGAGGCUGCAGUGmiR5531OtherRNAmiRBase21
osa-MIR5077Oryza sativa (Rice) 1.03:14094752-14094842+54,38831.42UUCACGUCGGGUUCACCAmiR894OtherRNAmiRBase21
osa-MIR2907aOryza sativa (Rice) 1.03:23598551-23598615.1040.06UAUUUAAGGCGCCUGOtherRNAmiRBase21
osa-MIR5337aOryza sativa (Rice) 1.04:5621964-5622201+1070.06AAAUUACUUGUCGUUCUAGCUUUGmiR5337OtherRNAmiRBase21
osa-MIR5499Oryza sativa (Rice) 1.04:17241717-17241841.2,8671.66AAUGAAGAAUCGAACAmiR5499OtherRNAmiRBase21
osa-MIR1848Oryza sativa (Rice) 1.04:18131807-18131869+3,9002.25CCUCGCCGGCGCGCGCGUGCAGGmiR1848OtherRNAmiRBase21
osa-MIR5523Oryza sativa (Rice) 1.04:18205674-18205757.7110.41UGAGGAGGAACAUAUUUACUAGmiR5523OtherRNAmiRBase21
osa-MIR169gOryza sativa (Rice) 1.04:19420077-19420202+111,77564.57GGCAGUCUCCUUGGCUAGCmiR169OtherRNAmiRBase21
osa-MIR2118iOryza sativa (Rice) 1.04:21652388-21652568.4,3232.50UUCCUAGUGCCUCCCAUUCCUAmiR2118OtherRNAmiRBase21
osa-MIR5809Oryza sativa (Rice) 1.04:23527607-23527669-110.01CACAACGGCACCAGGGCGAOtherRNAmiRBase21
osa-MIR5532Oryza sativa (Rice) 1.04:23647854-23648007.7270.42UAAAGAACCCAAAGCAGACmiR5532OtherRNAmiRBase21
osa-MIR396dOryza sativa (Rice) 1.04:30320096-30320216+4,3012.49CAGGCUUUCUUGAACGGmiR396OtherRNAmiRBase21
osa-MIR396eOryza sativa (Rice) 1.04:34436820-34437003+2,205,4161,273.99UCCACAGGCUUUCUUGAACUGmiR396OtherRNAmiRBase21
osa-MIR426Oryza sativa (Rice) 1.05:174006-174153.20.00GCUAGCAAAGUUUAGUmiR426OtherRNAmiRBase21
osa-MIR2930Oryza sativa (Rice) 1.06:8376783-8376962-410.02CUACAGAGCGAGCCAmiR2930OtherRNAmiRBase21
osa-MIR5072Oryza sativa (Rice) 1.06:17458695-17458770-2330.14UUCCCCAGCGGAGUCGCCAmiR5072OtherRNAmiRBase21
osa-MIR5836Oryza sativa (Rice) 1.06:17701867-17701955-10,8166.25UGAGCAGCCGGACCAmiR5836OtherRNAmiRBase21
osa-MIR5079aOryza sativa (Rice) 1.06:28181408-28181813.630.04GAGUUCUCGCGGGCCOtherRNAmiRBase21
osa-MIR6250Oryza sativa (Rice) 1.06:28264615-28264740+3,9482.28GGGGAUAGAUCGACGCGUCAAGAmiR6250OtherRNAmiRBase21
osa-MIR2918Oryza sativa (Rice) 1.06:31091921-31092085-1480.09UGGGCAAAGAAGGAUGGAUUmiR2918OtherRNAmiRBase21
osa-MIR6255Oryza sativa (Rice) 1.07:25018786-25018870-7300.42CUCAACAAUCAUUUUUCCCACAUGUmiR6255OtherRNAmiRBase21
osa-MIR6253Oryza sativa (Rice) 1.07:25019014-25019092-1,3510.78AUUUUCCUCUCAUUAmiR6253OtherRNAmiRBase21
osa-MIR1424Oryza sativa (Rice) 1.07:26662355-26662654.90.01AUUGGGAGCUCAAGGmiR1424OtherRNAmiRBase21
osa-MIR2920Oryza sativa (Rice) 1.07:28405506-28405715+50.00UUGUAUGGGUUAAGCACUGGCOtherRNAmiRBase21
osa-MIR531aOryza sativa (Rice) 1.08:1220358-1220438-910.05CUCGCCGGGGCUGCGUGCCGCCAmiR531OtherRNAmiRBase21
osa-MIR5071Oryza sativa (Rice) 1.08:4114004-4114102.40.00GUAUGUAUAUGGUUGCCmiR5071OtherRNAmiRBase21
osa-MIR5503Oryza sativa (Rice) 1.08:10797422-10797677.2520.15UAUUGUUGCUGUAAUCAAAGACGCOtherRNAmiRBase21
osa-MIR5073Oryza sativa (Rice) 1.08:19020495-19020601.3140.18AGAAUUAGUUUGGUGAAUCGGAmiR5073OtherRNAmiRBase21
osa-MIR2120Oryza sativa (Rice) 1.08:22733773-22733845.90.01ACUAAAGAUCUUUUCUUUACUCCCGGUmiR2120OtherRNAmiRBase21
osa-MIR166mOryza sativa (Rice) 1.08:23045356-23045555+231,564133.77UCGGACCAGGCUUCAUUCCCmiR166OtherRNAmiRBase21
osa-MIR169hOryza sativa (Rice) 1.08:26807349-26807470+7,5634.37GGCAGUCUCCUUGGCUAGCmiR169OtherRNAmiRBase21
osa-MIR169mOryza sativa (Rice) 1.08:26813897-26814034+11,9986.93UAGCCAAGGAUGACUUGCCUGmiR169OtherRNAmiRBase21
osa-MIR169qOryza sativa (Rice) 1.08:26817488-26817595+80,57346.54UAGCCAAGGAUGACUUGCCUGmiR169OtherRNAmiRBase21
osa-MIR169lOryza sativa (Rice) 1.08:26817488-26817595+80,57346.54UAGCCAAGGAUGACUUGCCUGmiR169OtherRNAmiRBase21