het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Arabidopsis thaliana (thale cress) genome build 10 (ath-b10)

TAIR10 assembly of Arabidopsis thaliana Col-0 ecotype from Phytozome.

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ath-MIR169hArabidopsis thaliana (thale cress) 101:6695419-6695608-2,3667.19AGAAUGAGAACUUGUGUGGmiR169OtherRNAmiRBase
ath-MIR829Arabidopsis thaliana (thale cress) 101:11834022-11834226-21,94166.64ACUUUGAAGCUUUGAUUUGAAmiR829OtherRNAmiRBase
ath-MIR5630aArabidopsis thaliana (thale cress) 101:12011152-12011223+3841.17AGACUGGAAAGAAGAAGCOtherRNAmiRBase
ath-MIR5630bArabidopsis thaliana (thale cress) 101:12023526-12023597+3291.00CCAGAGACUGGAAAGAAGAAGCUUAOtherRNAmiRBase
ath-MIR156iArabidopsis thaliana (thale cress) 101:19806917-19807113+500.15UGAGCGAAGAAGGAAGAGCOtherRNAmiRBase
ath-MIR4227Arabidopsis thaliana (thale cress) 101:22372670-22372790+20.01UUGAUUGGUAACAUGAACUOtherRNAmiRBase
ath-MIR413Arabidopsis thaliana (thale cress) 101:23058034-23058156+20.01CAAAUGGAAGAUUGUGGCUmiR413OtherRNAmiRBase
ath-MIR414Arabidopsis thaliana (thale cress) 101:25137456-25137563-310.09UCUAAGGAUGCGGAAGAGAUCOtherRNAmiRBase
ath-MIR4228Arabidopsis thaliana (thale cress) 101:28889375-28889532+3,1059.43GUCGGAUGCGAAACGGUGGUGmiR4228OtherRNAmiRBase
ath-MIR402Arabidopsis thaliana (thale cress) 101:29016520-29016828+1,3073.97AUAUCAAACGAGUCUGCUACUmiR402OtherRNAmiRBase
ath-MIR5642bArabidopsis thaliana (thale cress) 102:2805-3176+26,56480.68UCUCGCGCUUGUACGGCUUUGGCmiR5642OtherRNAmiRBase
ath-MIR8170Arabidopsis thaliana (thale cress) 102:14099959-14100149+1600.49UAAAGAUUUUCUAUGUGGAmiR8170OtherRNAmiRBase
ath-MIR169kArabidopsis thaliana (thale cress) 103:9875524-9875736-1650.50GGCAGUCUCCUUGGCUAUCmiR169OtherRNAmiRBase
ath-MIR169mArabidopsis thaliana (thale cress) 103:9878167-9878378-5781.76GGCAGUCUCCUUGGCUAUCmiR169OtherRNAmiRBase
ath-MIR5642aArabidopsis thaliana (thale cress) 103:14196774-14197147+2,2246.76AGGGUGAUGAACGAAAUGUGAACCCUmiR5642OtherRNAmiRBase
ath-MIR2936Arabidopsis thaliana (thale cress) 104:1046804-1046983-7822.38GUCUGUUUUCUCUCUUUUCAAGmiR2936OtherRNAmiRBase
ath-MIR5660Arabidopsis thaliana (thale cress) 104:5292626-5292820.610.19UCAGGAGGUUAGUGCAAUGOtherRNAmiRBase
ath-MIR5020bArabidopsis thaliana (thale cress) 104:6787003-6787153-6,20018.83AUGGCAUGAAAGAAGGUGAGAAUUmiR5020OtherRNAmiRBase
ath-MIR4240Arabidopsis thaliana (thale cress) 104:10711558-10711762-6612.01UAUGUUAUCGGGUCUAGCACUmiR4240OtherRNAmiRBase
ath-MIR8176Arabidopsis thaliana (thale cress) 104:11795177-11795275+1,0683.24UGCUUACCGAGUUUCUUACAUUUmiR8176OtherRNAmiRBase
ath-MIR5658Arabidopsis thaliana (thale cress) 104:18485438-18485531+520.16GUGAAAGAUCUGGAUUCAACUGGUGAUGAUGAUGOtherRNAmiRBase
ath-MIR1888aArabidopsis thaliana (thale cress) 105:7168870-7168969+1,8865.73UAAGUUAAGAUUUGUGAAGmiR1888OtherRNAmiRBase
ath-MIR3434Arabidopsis thaliana (thale cress) 105:7583055-7583403-7602.31ACUUGGCUGAUUCUAUUAUUmiR3434OtherRNAmiRBase
ath-MIR5657Arabidopsis thaliana (thale cress) 105:9789582-9789666.2,1816.62GAGUCGAACUCUUGUCCUmiR5657OtherRNAmiRBase
ath-MIR5027Arabidopsis thaliana (thale cress) 105:10943902-10944062+3090.94CCGGUUGGAACUUGCCUUAACmiR5027OtherRNAmiRBase
ath-MIR8181Arabidopsis thaliana (thale cress) 105:21641177-21641308-860.26UGGGGGUGGGGGGGUGACAGmiR8181OtherRNAmiRBase
ath-MIR2938Arabidopsis thaliana (thale cress) 105:22251822-22251921-30.01UUCUUUUAAUCUCAAAAACUGGACCCCUCOtherRNAmiRBase