het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Arabidopsis thaliana (thale cress) genome build 10 (ath-b10)

TAIR10 assembly of Arabidopsis thaliana Col-0 ecotype from Phytozome.

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
AFB3Arabidopsis thaliana (thale cress) 101:4368760-4371293.4,87014.79AAGAGGCUCGCGCAGAAUUCGsiRNA21TAS_loci
TAS1bArabidopsis thaliana (thale cress) 101:18549204-18550042.121,930370.32UAUUAUCAGAGUAGUUAUGAUsiRNA21TAS_loci
PPR-At1g62590Arabidopsis thaliana (thale cress) 101:23176930-23179248.6,78220.60AAUGGAUUAUGUAAGAGAGGUsiRNA21TAS_loci
PPR-At1g62910Arabidopsis thaliana (thale cress) 101:23299057-23300958.23,90072.59AACGGAUUAUGUAAGAGAGGUsiRNA21TAS_loci
PPR-At1g62930Arabidopsis thaliana (thale cress) 101:23306534-23308683.8,36425.40AACGGAUUAUGUAAGAGAGGUsiRNA21TAS_loci
PPR-At1g63070Arabidopsis thaliana (thale cress) 101:23385324-23387167.3391.03AAGGAGGGGAAGCUUGUAGAGsiRNA21TAS_loci
PPR-At1g63080Arabidopsis thaliana (thale cress) 101:23387631-23390816.32,963100.11UGACUGUGCUGUAGAUCACAAsiRNA21TAS_loci
PPR-At1g63130Arabidopsis thaliana (thale cress) 101:23412730-23415149+71,879218.31AAUGGAUUAUGUAAGAGAGGUsiRNA21TAS_loci
PPR-At1g63150Arabidopsis thaliana (thale cress) 101:23419396-23421579+58,015176.20AACGGAUUAUGUAAGAGAGGUsiRNA21TAS_loci
PPR-At1g63330Arabidopsis thaliana (thale cress) 101:23489840-23491519.8432.56AAAGCUUCUGAAGCUGUGGCGsiRNA21TAS_loci
PPR-At1g63400Arabidopsis thaliana (thale cress) 101:23507320-23509053.8,49725.81UGAUGAUUAGCAAGGACUGUUsiRNA21TAS_loci
TAS1aArabidopsis thaliana (thale cress) 102:11721539-11722468-673,0782,044.23UGAUUGGAUCUUAGGAAAUUAsiRNA21TAS_loci
TAS1cArabidopsis thaliana (thale cress) 102:16537288-16538277.1,340,5914,071.55UCGGUGGAUCUUAGAAAAUUAsiRNA21TAS_loci
TAS2Arabidopsis thaliana (thale cress) 102:16539384-16540417.544,5021,653.72UUUCUACCAUCCGAUCAACAAGsiRNA21TAS_loci
TAS3aArabidopsis thaliana (thale cress) 103:5861491-5862437.237,267720.61UGACUCGAACGAAUUAGAGGUsiRNA21TAS_loci
TAS4Arabidopsis thaliana (thale cress) 103:9415004-9422587.45,561138.38AAUUGCCGUGGUGAAGGACGAsiRNA21TAS_loci
AFB2Arabidopsis thaliana (thale cress) 103:9867845-9870640.2,7708.41AGGGGAGGCAGAAAGUGGAUAsiRNA21TAS_loci
MET2Arabidopsis thaliana (thale cress) 104:8146345-8152131.6,27819.07UGUUGACUCGGAUGAUGAUGUsiRNA21TAS_loci
CC-NBS-LRR-At4g14610Arabidopsis thaliana (thale cress) 104:8380848-8383496.4921.49AACGAAAACAAGAGAGCCGUUsiRNA21TAS_loci
TIR-NBS-LRR-At5g38850Arabidopsis thaliana (thale cress) 105:15555156-15558732.29,92490.88UGUGGCCCUGCAGGAAUCGGUsiRNA21TAS_loci
SLGArabidopsis thaliana (thale cress) 105:15757717-15758109.9,18127.88CAGUCUCCAAGCCCAUCGGAACsiRNA21TAS_loci
ATCHX18Arabidopsis thaliana (thale cress) 105:16638370-16641728.7,65423.25CCGAAGAAAAGCUUGACUGUUsiRNA21TAS_loci
TAS3BArabidopsis thaliana (thale cress) 105:20134200-20134786.11,49134.90UUCUGGUCUUUUUUUCUUGACsiRNA21TAS_loci
TAS3CArabidopsis thaliana (thale cress) 105:23394005-23394500.3,50710.65UUGGUUUGUUGUUUCUAUUCCsiRNA21TAS_loci