het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Glycine max (Soybean) genome build 1.0 (gma-b1.0)

Version v1.0 of Glycine max Merrill cv. Williams 82 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
gma-b1.0r1-42Glycine max (Soybean) 1.01:595874-596002-5,0391.24CCCUGCCGUCAAGUUCUCCCAUUsiRNA23ShortStack
gma-b1.0r1-126Glycine max (Soybean) 1.01:1580905-1580928+6250.15GGUACUAAGAUUGAUCAUUGAAGsiRNA23ShortStack
gma-b1.0r1-726Glycine max (Soybean) 1.01:6296381-6296404+1540.04UUAAGCUUCCCGGGUAGAAAAGCsiRNA23ShortStack
gma-b1.0r1-1345Glycine max (Soybean) 1.01:25921217-25921260+4900.12UCUGGAACCCCCGUGAACAUGUUsiRNA23ShortStack
gma-b1.0r1-2314Glycine max (Soybean) 1.01:43746849-43747111.6300.16ACCAAAUUGCCAGUCACACUGsiRNA23ShortStack
gma-b1.0r1-2447Glycine max (Soybean) 1.01:45316591-45316719+1,1100.27ACUAUAGUAUAGGUCGGAUGUUUsiRNA23ShortStack
gma-b1.0r1-2531Glycine max (Soybean) 1.01:46541310-46541566-1,0520.26AGAGAAUUAGGACUCAUAGACCUsiRNA23ShortStack
gma-b1.0r1-3007Glycine max (Soybean) 1.01:50586075-50586170+2,0190.50UUUAAUUAAUUUUGUUUGUGAAGsiRNA23ShortStack
gma-b1.0r1-3245Glycine max (Soybean) 1.01:52557792-52557817-3570.09GAUACUUACAAUUCUUCAUGUAGsiRNA23ShortStack
gma-b1.0r1-3387Glycine max (Soybean) 1.01:54132185-54132290+16,8564.14GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-4457Glycine max (Soybean) 1.010:8711673-8711767+7710.19AUGAUUGUUGCUGUUGCCAUGCCsiRNA23ShortStack
gma-b1.0r1-4975Glycine max (Soybean) 1.010:20373281-20373341.8320.20AGAUAUUGAGCUGGUAGAGGAGAsiRNA23ShortStack
gma-b1.0r1-5782Glycine max (Soybean) 1.010:38463126-38463161-5,1571.27AGUAUUAACUCUAAAACUUGCAGsiRNA23ShortStack
gma-b1.0r1-6888Glycine max (Soybean) 1.010:48657405-48657518+1,6870.41AGGAUGUAGAAGAUCAUAACAUGmiR6485siRNA23ShortStack
gma-b1.0r1-6969Glycine max (Soybean) 1.010:49569239-49569262+3410.08CUUACUGAUUGAAAGUUUUGCAGsiRNA23ShortStack
gma-b1.0r1-7050Glycine max (Soybean) 1.010:50620805-50621044+84,27020.67UUGACUGACCCUCCCUCCUUAAGsiRNA23ShortStack
gma-b1.0r1-7315Glycine max (Soybean) 1.011:3010791-3010856+4000.10GAUACUUACAAUUCUUCAUGUAGsiRNA23ShortStack
gma-b1.0r1-9298Glycine max (Soybean) 1.011:29674197-29674286-8470.21UUGGAUAUGAGGACUUAGCAAUUsiRNA23ShortStack
gma-b1.0r1-9300Glycine max (Soybean) 1.011:29676172-29676311+4970.12UUGGAUAUGAGGACUUAGCAAUUsiRNA23ShortStack
gma-b1.0r1-11515Glycine max (Soybean) 1.012:11561803-11561861+9630.24UUUCCUUAAUGUACUUAUACCAGsiRNA23ShortStack
gma-b1.0r1-11562Glycine max (Soybean) 1.012:11957448-11957475+2300.06UUUUUUAACUGUUUUGCAGAUGGsiRNA23ShortStack
gma-b1.0r1-11806Glycine max (Soybean) 1.012:15982494-15982677+214,26652.56GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-12815Glycine max (Soybean) 1.012:35808360-35808383+3870.10CUAAUCUGAUUAUUUGUUUGCAGsiRNA23ShortStack
gma-b1.0r1-12882Glycine max (Soybean) 1.012:36244785-36244967-135,61533.27GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-16515Glycine max (Soybean) 1.013:32321493-32321583-1,9890.49AUAUCAUACACUCUCUGCACUGGsiRNA23ShortStack
gma-b1.0r1-16743Glycine max (Soybean) 1.013:34147645-34147795+7,3481.80AUUCCUUAGCCAAUAAACUGUAGsiRNA23ShortStack
gma-b1.0r1-17406Glycine max (Soybean) 1.013:39827140-39827245-2,1570.53ACUUACUAAAAUUUGGAUUUCAGsiRNA23ShortStack
gma-b1.0r1-18875Glycine max (Soybean) 1.014:7522275-7522301+1,1880.29UUCCUUGACGCUUUGGUUUUCAGsiRNA23ShortStack
gma-b1.0r1-20445Glycine max (Soybean) 1.014:40049155-40049268+4300.11AUGAAACUGUUUGUCUCAAUAAAsiRNA23ShortStack
gma-b1.0r1-20843Glycine max (Soybean) 1.014:45046886-45046911-4510.11AUUUCUGACAUUUUUUGAUGUAGsiRNA23ShortStack
gma-b1.0r1-22093Glycine max (Soybean) 1.015:5278503-5278697-16,3554.01AUUCCUUAGCCAAUAAACUGUAGsiRNA23ShortStack
gma-b1.0r1-22199Glycine max (Soybean) 1.015:6235919-6236048-68,27616.75GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-24071Glycine max (Soybean) 1.015:30929430-30929533+1,4580.36AAGAUAAGUCAGGGUAGACGCCUsiRNA23ShortStack
gma-b1.0r1-24567Glycine max (Soybean) 1.015:43969255-43969568-4,6681.15AGAUGAGGAUACAUAGGAUUGUGsiRNA23ShortStack
gma-b1.0r1-24811Glycine max (Soybean) 1.015:46947120-46947366+36,9229.06AACCAGGCUCUGAUACCAUUUUUsiRNA23ShortStack
gma-b1.0r1-26585Glycine max (Soybean) 1.016:14100581-14100607+7860.19CACCCCUCCCCAAGCCCCUGACAsiRNA23ShortStack
gma-b1.0r1-27247Glycine max (Soybean) 1.016:27744104-27744127-5100.13UACAUUAAUGGCUCAACUGUAGsiRNA23ShortStack
gma-b1.0r1-27642Glycine max (Soybean) 1.016:30403174-30403198+6990.17UUUGAUGAUGAAGACUGAAGAGAsiRNA23ShortStack
gma-b1.0r1-28501Glycine max (Soybean) 1.017:998818-998847-9230.23AUGAACUGUAUCUCUUGUUGCAGsiRNA23ShortStack
gma-b1.0r1-28518Glycine max (Soybean) 1.017:1111312-1111336-2340.06AUGACCUGAAUUUCUUAAUGCAGsiRNA23ShortStack
gma-b1.0r1-28671Glycine max (Soybean) 1.017:2861359-2861464-110,41827.09GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-31225Glycine max (Soybean) 1.017:38313299-38313564+13,6033.34AUAGAGGAACAUGUAUAACUAGCsiRNA23ShortStack
gma-b1.0r1-31409Glycine max (Soybean) 1.017:39710301-39710327-7600.19UUCCUUGACACUUUGGUUUUCAGsiRNA23ShortStack
gma-b1.0r1-31785Glycine max (Soybean) 1.018:1376604-1376740-3,5720.88UGAGAUUGGUUCUGGGGGUUGACsiRNA23ShortStack
gma-b1.0r1-32928Glycine max (Soybean) 1.018:10297617-10297672.1,3270.33CGUCAAUAUGGAUCAUCAUCAGGsiRNA23ShortStack
gma-b1.0r1-33084Glycine max (Soybean) 1.018:12556431-12556601+1,2750.31ACAUAUCAACUUAAUGGACACGUsiRNA23ShortStack
gma-b1.0r1-33959Glycine max (Soybean) 1.018:38111638-38111743+3,4460.85UUGAAGUUUGGAAGUAAACGCCUsiRNA23ShortStack
gma-b1.0r1-35968Glycine max (Soybean) 1.018:62079954-62079978+5680.14GUUUGCUGAUCUUUGCAUUGCAGsiRNA23ShortStack
gma-b1.0r1-36411Glycine max (Soybean) 1.019:3198443-3198573-73,83618.11GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-36842Glycine max (Soybean) 1.019:7498893-7498972-2,1820.54AAGAUAAGUCAGGGUAGACGCCUsiRNA23ShortStack
gma-b1.0r1-37222Glycine max (Soybean) 1.019:22904499-22904627+1,1320.28CAACGGUUAACGAAUCAGAACGUsiRNA23ShortStack
gma-b1.0r1-37280Glycine max (Soybean) 1.019:26868852-26868875+2050.05AAAACUGUUUUACACUGAGAGAGsiRNA23ShortStack
gma-b1.0r1-38595Glycine max (Soybean) 1.019:40633482-40633593-88,14121.62GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-38710Glycine max (Soybean) 1.019:41532088-41532110-10,0392.46AAGGAUGAGGAAAAAGGAACAAAsiRNA23ShortStack
gma-b1.0r1-39450Glycine max (Soybean) 1.019:48168871-48168899-2860.07UCGACUUGAAUUUUGAGAUGCAGsiRNA23ShortStack
gma-b1.0r1-39557Glycine max (Soybean) 1.019:49258210-49258235+4930.12GAUGUUAACAACUUAACCUGCAGsiRNA23ShortStack
gma-b1.0r1-39912Glycine max (Soybean) 1.02:1855400-1855607-9,9132.43UAUUUAACGGAUAUGUCAUCACUsiRNA23ShortStack
gma-b1.0r1-41485Glycine max (Soybean) 1.02:14319528-14319688+37,2019.13GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-41721Glycine max (Soybean) 1.02:19811683-19811718+7460.18AAGAUAAGUCAGGGUAGACGCCUsiRNA23ShortStack
gma-b1.0r1-42106Glycine max (Soybean) 1.02:34083965-34084206.8560.21CCAGAAUAAGGGACUUAGACAAAsiRNA23ShortStack
gma-b1.0r1-42281Glycine max (Soybean) 1.02:38647657-38647680-8720.21CAAGGACUAAAAACAGAAAUUCUsiRNA23ShortStack
gma-b1.0r1-43364Glycine max (Soybean) 1.02:48583219-48583334-2,6500.65UGCAGUUGGGAUGGAGUUGACCUsiRNA23ShortStack
gma-b1.0r1-43819Glycine max (Soybean) 1.020:1292512-1292535-1520.04GAAUUUUGAAAAUUUGAUUGCAGsiRNA23ShortStack
gma-b1.0r1-44044Glycine max (Soybean) 1.020:3082700-3082722+2390.06UUGGAUAUGAGGACUUAGCAAUUsiRNA23ShortStack
gma-b1.0r1-45517Glycine max (Soybean) 1.020:35556474-35556677+5,9331.46CCAACGAUCCACAGACUCCAAAGsiRNA23ShortStack
gma-b1.0r1-45845Glycine max (Soybean) 1.020:38170202-38170232+2,4780.61GAUACUCAUGAUAUUGAUCGCAGsiRNA23ShortStack
gma-b1.0r1-46389Glycine max (Soybean) 1.020:43406321-43406349-7670.19CGGUUGUGAUGGAUCUGAACACUsiRNA23ShortStack
gma-b1.0r1-46470Glycine max (Soybean) 1.020:44154952-44154976-2130.05UGAACACAAUCAAAUUUUUGCAGsiRNA23ShortStack
gma-b1.0r1-48047Glycine max (Soybean) 1.03:20886667-20887077-6,1901.52UGGACCCGUGAGCCAAGGAAGGAsiRNA23ShortStack
gma-b1.0r1-48141Glycine max (Soybean) 1.03:23008712-23008736+5000.12CAACCCCCCCAAUCGUUACUGUUsiRNA23ShortStack
gma-b1.0r1-49227Glycine max (Soybean) 1.03:38048055-38048291-58,03114.24GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-49552Glycine max (Soybean) 1.03:40901031-40901056+7320.18GAUGCUAAUCUGUCUGAUUCAAGsiRNA23ShortStack
gma-b1.0r1-49998Glycine max (Soybean) 1.03:45317860-45318031+231,57856.81GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-50089Glycine max (Soybean) 1.03:46240088-46240113+2,3160.57ACAACUGAUGAUAACUCUGACUUsiRNA23ShortStack
gma-b1.0r1-50530Glycine max (Soybean) 1.04:2268424-2268552+272,72666.90GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-50610Glycine max (Soybean) 1.04:3256234-3256259+1780.04UGUGCUUGAUUUAUGAAUGUAGAsiRNA23ShortStack
gma-b1.0r1-50652Glycine max (Soybean) 1.04:3736642-3736693+4,1281.01GCCUUGGUGGUGAAAUGGUAGACsiRNA23ShortStack
gma-b1.0r1-52181Glycine max (Soybean) 1.04:35517909-35517979-5440.13UGGGUUCCCCAGUGGAGUCGCCAsiRNA23ShortStack
gma-b1.0r1-52339Glycine max (Soybean) 1.04:38175335-38175357.2060.05CAAAGGCUUCUGCAUCAGCGUUUsiRNA23ShortStack
gma-b1.0r1-52411Glycine max (Soybean) 1.04:38950827-38950925+274,30867.29GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-52854Glycine max (Soybean) 1.04:43061846-43061888+1,1760.29CUUACCCCUUUGUUGUUCUGCAGsiRNA23ShortStack
gma-b1.0r1-52921Glycine max (Soybean) 1.04:43541132-43541542-4,9701.22UUCCUUGAUUUAUUUUGACCUAGsiRNA23ShortStack
gma-b1.0r1-53621Glycine max (Soybean) 1.05:563441-563614+214,25752.56GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-54006Glycine max (Soybean) 1.05:3523219-3523243+2550.06GAUACUUAUUCAUUGUUAAGCAGsiRNA23ShortStack
gma-b1.0r1-54827Glycine max (Soybean) 1.05:18378554-18378802.1,0170.25CAACUAACUUGUGUCCGAGUGGUsiRNA23ShortStack
gma-b1.0r1-55608Glycine max (Soybean) 1.05:32590416-32590444+4920.12GUAGGAAACUAGAGCAUAGUGAUsiRNA23ShortStack
gma-b1.0r1-58027Glycine max (Soybean) 1.06:14267616-14267983+2,8820.71UUCCUUGAUUUAUUUUGACCUAGsiRNA23ShortStack
gma-b1.0r1-58404Glycine max (Soybean) 1.06:16947004-16947080+1,4990.37CGAUGUUGGAUCAAUUUGCGCCUsiRNA23ShortStack
gma-b1.0r1-58442Glycine max (Soybean) 1.06:17376284-17376407-293,27071.94GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-59030Glycine max (Soybean) 1.06:33783514-33783841-11,4372.81UGGUAUGAAUUUUUGACCAACGCsiRNA23ShortStack
gma-b1.0r1-59142Glycine max (Soybean) 1.06:36962648-36962673+9930.24AAGAUAAGUCAGGGUAGACGCCUsiRNA23ShortStack
gma-b1.0r1-60219Glycine max (Soybean) 1.06:48440290-48440462-953,580233.91GGGGAUGUAGCUCAGAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-61954Glycine max (Soybean) 1.07:11383119-11383358-93,38422.91UCUGUUCUAGUGUAUCAUACAUUsiRNA23ShortStack
gma-b1.0r1-62962Glycine max (Soybean) 1.07:27993905-27994102.1,3010.32GUUCUCUCUCAAUGAAAGCACCAsiRNA23ShortStack
gma-b1.0r1-63470Glycine max (Soybean) 1.07:37545230-37545326-15,1103.71GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-64016Glycine max (Soybean) 1.07:41527127-41527268-57,95214.22GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
gma-b1.0r1-64137Glycine max (Soybean) 1.07:43034024-43034048+3340.08UUGAACUGAUUUCUUUUACACAGsiRNA23ShortStack
gma-b1.0r1-64522Glycine max (Soybean) 1.08:2586607-2586634+1,6410.40CAUCCUUAACUGUUAUUUUCCAGsiRNA23ShortStack
gma-b1.0r1-65311Glycine max (Soybean) 1.08:10345529-10345554+1,9790.49GUGAACUGAAUUGUCGCUUGUAGsiRNA23ShortStack
gma-b1.0r1-66024Glycine max (Soybean) 1.08:15737445-15737469-5470.13UGAAUCUGAUUUUCUGACUGCAGsiRNA23ShortStack
gma-b1.0r1-67541Glycine max (Soybean) 1.08:39417139-39417162+8150.20UACAUUAAUGGCUCAACUGUAGsiRNA23ShortStack
gma-b1.0r1-68433Glycine max (Soybean) 1.08:46472399-46472424-5750.14GUUUGCUGAUCUUUGCAUUGCAGsiRNA23ShortStack
gma-b1.0r1-68663Glycine max (Soybean) 1.09:1410072-1410141-4,6521.14CUUCCUUAACUCAACCACUUCAGsiRNA23ShortStack
gma-b1.0r1-69058Glycine max (Soybean) 1.09:4578340-4578367+7700.19CUAAACUUAGAUCUAUGGAGCAGsiRNA23ShortStack
gma-b1.0r1-69543Glycine max (Soybean) 1.09:8854127-8854152+2950.07GGAGAUAUUUGUUUUGGACUUGGsiRNA23ShortStack
gma-b1.0r1-69546Glycine max (Soybean) 1.09:8860701-8860779-2870.07AACGGUUUAGAAGAAUUUGAAUCsiRNA23ShortStack
gma-b1.0r1-71732Glycine max (Soybean) 1.09:41269652-41269678-4010.10UGUUCUGAUUCUGAAUGAAGCAGsiRNA23ShortStack