het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Glycine max (Soybean) genome build 1.0 (gma-b1.0)

Version v1.0 of Glycine max Merrill cv. Williams 82 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
gma-b1.0r1-15Glycine max (Soybean) 1.01:311456-311477-2960.07UGGUUGAAUUUAUCACAGGAGnearMIRNAShortStack
gma-b1.0r1-61Glycine max (Soybean) 1.01:812717-812862+4,9481.21AAGAAGAUUAAUCAAGACUGUAUAnearMIRNAShortStack
gma-b1.0r1-827Glycine max (Soybean) 1.01:7524394-7524415+960.02AAGGAAUUUGAGUUUAGUGGCnearMIRNAShortStack
gma-b1.0r1-1069Glycine max (Soybean) 1.01:11662702-11662816-3,5360.87UAUGUUGGUAGGAAAAACUCUGnearMIRNAShortStack
gma-b1.0r1-1312Glycine max (Soybean) 1.01:24948445-24948522-2,0520.50UGAUCCAGGAACUUUUCAUCUmiR9755nearMIRNAShortStack
gma-b1.0r1-1910Glycine max (Soybean) 1.01:37033161-37033194-3560.09AGAGAUAUGUGACUUUGUAAGAACnearMIRNAShortStack
gma-b1.0r1-1920Glycine max (Soybean) 1.01:37282170-37282391+2,9020.71AACCACUGAAACGUCUUCCGGAAGnearMIRNAShortStack
gma-b1.0r1-2144Glycine max (Soybean) 1.01:41428836-41428938-1,1580.28GAUCAUGCUAUCCCUUUGGACmiR393nearMIRNAShortStack
gma-b1.0r1-2391Glycine max (Soybean) 1.01:44627565-44627586+1820.05AAGAUGAAUAUGAACUUGAUGnearMIRNAShortStack
gma-b1.0r1-2760Glycine max (Soybean) 1.01:48531328-48531418+1,5600.38UCAUUUUGCGUGCAAUGAUCUGmiR1515nearMIRNAShortStack
gma-b1.0r1-6649Glycine max (Soybean) 1.010:46141087-46141166+1,0920.27AGGGAGCAGUGACACAGAUUCAUUnearMIRNAShortStack
gma-b1.0r1-7676Glycine max (Soybean) 1.011:6738051-6738199+1,9160.47UUUACGAGUCGAGUUUAUGGAACUnearMIRNAShortStack
gma-b1.0r1-8579Glycine max (Soybean) 1.011:16110700-16110720-1030.03AAGAUGUAAAUGUUGGAUCAAnearMIRNAShortStack
gma-b1.0r1-9315Glycine max (Soybean) 1.011:29794496-29794698+1,2890.32CGAGGACUAUUGCUUGAUGGCnearMIRNAShortStack
gma-b1.0r1-9957Glycine max (Soybean) 1.011:36844943-36845029-1,4770.36UAUAAAUAGGACCAGAGGUAGmiR5281nearMIRNAShortStack
gma-b1.0r1-11454Glycine max (Soybean) 1.012:11016270-11016400+3,8980.96GAUGUCACUUUAAACUUUUGGAGGnearMIRNAShortStack
gma-b1.0r1-12661Glycine max (Soybean) 1.012:34532001-34532234+1,7530.43GAGCGCGCGUAUUGGGCUGAGCCUnearMIRNAShortStack
gma-b1.0r1-14635Glycine max (Soybean) 1.013:12837356-12837496-2,9680.73UAAUAGAUUCAACAAGGGCAGAGUnearMIRNAShortStack
gma-b1.0r1-15055Glycine max (Soybean) 1.013:20668713-20668740-5660.14UUAGAGAACAAUACCAAAAGCACCnearMIRNAShortStack
gma-b1.0r1-15086Glycine max (Soybean) 1.013:20945830-20945866-6490.16UUUGAAUUUCUAUACCUGAAAnearMIRNAShortStack
gma-b1.0r1-15601Glycine max (Soybean) 1.013:25088376-25088396+1720.04AAGAGGUUGGUAGCUAUGAUUnearMIRNAShortStack
gma-b1.0r1-16662Glycine max (Soybean) 1.013:33380569-33380592+2,9610.73UUUGGGGACCAAAGUGAACUUnearMIRNAShortStack
gma-b1.0r1-16884Glycine max (Soybean) 1.013:35265448-35265630-15,6003.83UUUGGAUUGAAGGGAGCUCCAmiR159nearMIRNAShortStack
gma-b1.0r1-17213Glycine max (Soybean) 1.013:37980688-37980711+1090.03AGAGAAUCAAGAUUUUAUUGUAGAnearMIRNAShortStack
gma-b1.0r1-17460Glycine max (Soybean) 1.013:40315755-40315779-2420.06UGCAUUUGCACCUGCACUUUAmiR530nearMIRNAShortStack
gma-b1.0r1-18050Glycine max (Soybean) 1.014:1090972-1090996-6260.15AUAUUUCUUGGUAGCUGGGCCnearMIRNAShortStack
gma-b1.0r1-18114Glycine max (Soybean) 1.014:1690164-1690210+6030.15AAGUUUUGAAGGAGAAAAGGAAUGnearMIRNAShortStack
gma-b1.0r1-19731Glycine max (Soybean) 1.014:17981709-17981733-5170.13UGCAGACUUAAUAAGCAAUGAnearMIRNAShortStack
gma-b1.0r1-19836Glycine max (Soybean) 1.014:19402369-19402400-1,2120.30AGAAUGGUGAUAUCGUAGCGACGAnearMIRNAShortStack
gma-b1.0r1-19860Glycine max (Soybean) 1.014:19969575-19969844-2,0890.51UGGGGACUGUCGGCCUUGCCGGnearMIRNAShortStack
gma-b1.0r1-20235Glycine max (Soybean) 1.014:30534889-30534913-2,2550.55CUGCGGAUCAAGUUGAUUGUUACGmiR10433nearMIRNAShortStack
gma-b1.0r1-21836Glycine max (Soybean) 1.015:2892952-2892990-1,0540.26GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
gma-b1.0r1-21926Glycine max (Soybean) 1.015:3767166-3767267+2,4700.61UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
gma-b1.0r1-23072Glycine max (Soybean) 1.015:13125930-13125952-860.02AAUGAGAAAAUCAAUGGUCGAnearMIRNAShortStack
gma-b1.0r1-23597Glycine max (Soybean) 1.015:18187530-18187561-2560.06UUUUGUCAUUGUAAAUUGAGCnearMIRNAShortStack
gma-b1.0r1-25631Glycine max (Soybean) 1.016:2794214-2794297-8730.21UGAAAGGAUAUGAUGGUAAACCUCmiR159nearMIRNAShortStack
gma-b1.0r1-26298Glycine max (Soybean) 1.016:7410797-7410837-3750.09UUCUAAUUUAUCAGGGACUAAmiR10424nearMIRNAShortStack
gma-b1.0r1-27545Glycine max (Soybean) 1.016:29725246-29725328-8690.21GUAAUGAGUAGAAACAUUUAGAAGmiR9729nearMIRNAShortStack
gma-b1.0r1-27895Glycine max (Soybean) 1.016:32256776-32256796+1570.04UGAUUUGUCUCAAAGUUGGUUnearMIRNAShortStack
gma-b1.0r1-28470Glycine max (Soybean) 1.017:754213-754255+6090.15UGAUGGUGGCGGCGAUGAGGAnearMIRNAShortStack
gma-b1.0r1-28553Glycine max (Soybean) 1.017:1401438-1401516-1,2700.31AAAGCCAUGACUUACACACGCmiR1513nearMIRNAShortStack
gma-b1.0r1-28684Glycine max (Soybean) 1.017:3000317-3000340+4610.11AAAUUCUAACAUUCUUCUGUAGnearMIRNAShortStack
gma-b1.0r1-29427Glycine max (Soybean) 1.017:10644163-10644254-1,1160.27UAAUGUGUCAAUUUAUUAUGUCnearMIRNAShortStack
gma-b1.0r1-30589Glycine max (Soybean) 1.017:29607011-29607056+2910.07UGAAGAGAAAAAUCUGACCCUUnearMIRNAShortStack
gma-b1.0r1-31039Glycine max (Soybean) 1.017:36651448-36651482-7640.19AAUGGUGAGGAUGAAGAGUAACmiR5380nearMIRNAShortStack
gma-b1.0r1-31070Glycine max (Soybean) 1.017:36870552-36870580+2250.06UUUGAUGAUAUGGAUGAAAGUUnearMIRNAShortStack
gma-b1.0r1-31652Glycine max (Soybean) 1.017:41853389-41853630+1,2480.31UCAAGGAGUUGAGUUAGGCCUnearMIRNAShortStack
gma-b1.0r1-33334Glycine max (Soybean) 1.018:16394377-16394397-1210.03UUGAAGUGUUUGGAGGAACUCmiR395nearMIRNAShortStack
gma-b1.0r1-35283Glycine max (Soybean) 1.018:56070486-56070753+1,2390.30UUCAAGCCAUUGCAUACCACCAUUnearMIRNAShortStack
gma-b1.0r1-35607Glycine max (Soybean) 1.018:58982933-58982979+1,3840.34UGUGGGAAUGAGGUCUUGUAGUnearMIRNAShortStack
gma-b1.0r1-35778Glycine max (Soybean) 1.018:60474181-60474252+4,2471.04AAGUUGUGAUGAGAAUCAAUGmiR4415nearMIRNAShortStack
gma-b1.0r1-39908Glycine max (Soybean) 1.02:1772409-1772517+4,2761.05UGAAGUGUUUGGGGGAACUCUmiR395nearMIRNAShortStack
gma-b1.0r1-41208Glycine max (Soybean) 1.02:12391640-12391668-4710.12AAACUGCAGAAUCUCAAUUUAAAUnearMIRNAShortStack
gma-b1.0r1-41424Glycine max (Soybean) 1.02:13629478-13629648-3,3200.81AGAAGGUAAAAGGAUUGAGCUnearMIRNAShortStack
gma-b1.0r1-41954Glycine max (Soybean) 1.02:30549105-30549227+4820.12UUAGGACAAACAGAACUUAGUnearMIRNAShortStack
gma-b1.0r1-41970Glycine max (Soybean) 1.02:30762374-30762400-3740.09UGACAUUGAUUGUGUGAUUGAnearMIRNAShortStack
gma-b1.0r1-43016Glycine max (Soybean) 1.02:45464003-45464166-1,3720.34UUAGGGUUUUGUAGUGAAGGCACCnearMIRNAShortStack
gma-b1.0r1-43377Glycine max (Soybean) 1.02:48729430-48729493+3920.10UAGAUGCAGUUCUGUUGGUGCnearMIRNAShortStack
gma-b1.0r1-44283Glycine max (Soybean) 1.020:9439124-9439145+1,0970.27UGACACUAACCACCUCUGAAGnearMIRNAShortStack
gma-b1.0r1-45184Glycine max (Soybean) 1.020:32872765-32872814+82,64420.27AAAAGCACUUAAGGAACGGUAmiR2606nearMIRNAShortStack
gma-b1.0r1-46064Glycine max (Soybean) 1.020:40243614-40243724-9150.22AAAACAAAUACAAGUUCAAGGACCnearMIRNAShortStack
gma-b1.0r1-47172Glycine max (Soybean) 1.03:3811065-3811089+4,0000.98UUUUGUGUCGUGAAGCUUUUGmiR5761nearMIRNAShortStack
gma-b1.0r1-48884Glycine max (Soybean) 1.03:35498338-35498492+3,3200.81GACACCGGACACGACAUGAACACGnearMIRNAShortStack
gma-b1.0r1-49231Glycine max (Soybean) 1.03:38094636-38094656-3640.09AUACGGGUCCUCUCACCUAGAmiR4416nearMIRNAShortStack
gma-b1.0r1-49375Glycine max (Soybean) 1.03:39367457-39367489+6730.17UGAACACUUGUAGAAAAUGCUnearMIRNAShortStack
gma-b1.0r1-49661Glycine max (Soybean) 1.03:42193543-42193566+3100.08AUGUUUUAUUGUUGUAACAAGnearMIRNAShortStack
gma-b1.0r1-50151Glycine max (Soybean) 1.03:46862493-46862532+6480.16UUUUUAAAAGGUUCAGUUAGGUmiR5773nearMIRNAShortStack
gma-b1.0r1-50155Glycine max (Soybean) 1.03:46896230-46896250+3,9760.98UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
gma-b1.0r1-51502Glycine max (Soybean) 1.04:12298508-12298528+3840.09GAGAAAUGUUUGACAAAGAAAnearMIRNAShortStack
gma-b1.0r1-51772Glycine max (Soybean) 1.04:17457245-17457486+3,0470.75AGGGACGGAAAAUGUAUUUAAGCCnearMIRNAShortStack
gma-b1.0r1-53078Glycine max (Soybean) 1.04:44850108-44850366+77,55919.03UCUCGGACCAGGCUUCAUUCCmiR166nearMIRNAShortStack
gma-b1.0r1-53686Glycine max (Soybean) 1.05:1120140-1120160+1660.04ACAUGAUUCAGGACCAUGUGGnearMIRNAShortStack
gma-b1.0r1-54393Glycine max (Soybean) 1.05:7732877-7732902-8670.21AUUGCAGGAAAUAAAGGGGGACCnearMIRNAShortStack
gma-b1.0r1-54597Glycine max (Soybean) 1.05:10217724-10217752+1,5540.38CAUGGUAGUGGAAGAAAUGGAmiR5672nearMIRNAShortStack
gma-b1.0r1-55899Glycine max (Soybean) 1.05:34967736-34967758-1350.03GGGCAAGUUCUCCAUUGGCAGGmiR399nearMIRNAShortStack
gma-b1.0r1-55970Glycine max (Soybean) 1.05:35743169-35743307+7,8611.93UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
gma-b1.0r1-56571Glycine max (Soybean) 1.05:41794112-41794266-1,8170.45UGCAUGCCUCUUGUCUUACUUnearMIRNAShortStack
gma-b1.0r1-57723Glycine max (Soybean) 1.06:11654123-11654175+6610.16UUUGAAAGUGCUUGUACAGGGACUnearMIRNAShortStack
gma-b1.0r1-57851Glycine max (Soybean) 1.06:12828125-12828243+1,5840.39AUUUGGUUGGGAUCAUAGAUGAUAnearMIRNAShortStack
gma-b1.0r1-57871Glycine max (Soybean) 1.06:13041556-13041639-2180.05UGGAUUGUAAUUAGAUGACUAUGCnearMIRNAShortStack
gma-b1.0r1-58964Glycine max (Soybean) 1.06:28886511-28886565+1800.04UUGAUUGUGUGAUUGACUUUGnearMIRNAShortStack
gma-b1.0r1-59190Glycine max (Soybean) 1.06:37942228-37942270-13,7463.37AAAAGCACUUAAGGAACGGUAmiR2606nearMIRNAShortStack
gma-b1.0r1-59839Glycine max (Soybean) 1.06:46029819-46029884+3740.09UACCCUUUCAGAUAGUCUCAAAmiR5034nearMIRNAShortStack
gma-b1.0r1-60593Glycine max (Soybean) 1.07:690216-690295-3,3900.83UAUGAAAGCUGCAGUUGGUGCnearMIRNAShortStack
gma-b1.0r1-61129Glycine max (Soybean) 1.07:5371623-5371821+1,7320.43AUUGCAGUGAAGGGAGCUCCAGmiR159nearMIRNAShortStack
gma-b1.0r1-61276Glycine max (Soybean) 1.07:6301125-6301376-2,5040.61GAGGGAUCAAAACCAAGUUUGGCUnearMIRNAShortStack
gma-b1.0r1-61809Glycine max (Soybean) 1.07:10198899-10198936+47,63211.68UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
gma-b1.0r1-62421Glycine max (Soybean) 1.07:16377801-16377823-1,8160.45AUCCUUGGGAUGUAGAUUACCmiR2111nearMIRNAShortStack
gma-b1.0r1-63384Glycine max (Soybean) 1.07:36982166-36982314-2,4700.61UUGACUGAGAACAAUAUUGUUUAUnearMIRNAShortStack
gma-b1.0r1-65563Glycine max (Soybean) 1.08:12376942-12376966+5360.13UACAACUAACUAUCUUUGAAGnearMIRNAShortStack
gma-b1.0r1-66705Glycine max (Soybean) 1.08:20942843-20942936+4,4231.09AUCACUUGAAGAUUGAAGGCCnearMIRNAShortStack
gma-b1.0r1-66952Glycine max (Soybean) 1.08:23142774-23142800+6440.16AAGUUGUGAUGGGAAUCAAUGGCAmiR4415nearMIRNAShortStack
gma-b1.0r1-66953Glycine max (Soybean) 1.08:23142895-23142919+1,0940.27UUGAUUCUCAUCACAACAUGGmiR4415nearMIRNAShortStack
gma-b1.0r1-67967Glycine max (Soybean) 1.08:42709495-42709514+5810.14AUUGGGACAAUACUUAGAUAnearMIRNAShortStack
gma-b1.0r1-68422Glycine max (Soybean) 1.08:46321065-46321087-6300.16UUGAAAAUUGUGGGAUGAAAUnearMIRNAShortStack
gma-b1.0r1-69691Glycine max (Soybean) 1.09:10589819-10589841+4670.12GAGAAUGGUUUUGUAGAUAUGnearMIRNAShortStack
gma-b1.0r1-69734Glycine max (Soybean) 1.09:11536974-11537108-1,2370.30UUUAGUCCUUCCAAAUUAUGUUnearMIRNAShortStack
gma-b1.0r1-70010Glycine max (Soybean) 1.09:18456296-18456429-1,2320.30GAGAGUUGGAGAGAGCCACGUGUUnearMIRNAShortStack
gma-b1.0r1-70390Glycine max (Soybean) 1.09:28316678-28316884+1,3170.32UCGCUCCCCAGUGGAGUCGCCAnearMIRNAShortStack
gma-b1.0r1-70406Glycine max (Soybean) 1.09:28530234-28530263+1,7500.43UAGAAAGGGAAAUAGCAGUUGmiR1508nearMIRNAShortStack
gma-b1.0r1-71231Glycine max (Soybean) 1.09:37125227-37125274-25,6326.29UCUCGGACCAGGCUUCAUUCCmiR166nearMIRNAShortStack
gma-b1.0r1-72298Glycine max (Soybean) 1.09:46771317-46771338+6500.16UCUGCGAAAAUGUGAUUUCGGAmiR4392nearMIRNAShortStack