Data from Lunardon et al. (2020)

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Genome

Arabidopsis thaliana (thale cress) genome build 10 (ath-b10)

TAIR10 assembly of Arabidopsis thaliana Col-0 ecotype from Phytozome.

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
ath-b10r1-15593	Arabidopsis thaliana (thale cress) 10	1:2976196-2976285	-	365	1.11	AACGAUGAUGAAAAUUCUGAGAU		siRNA23	ShortStack
ath-b10r1-16934	Arabidopsis thaliana (thale cress) 10	1:11693319-11693589	.	1,674	5.08	CGAGAUGAGAGAACUUAGUUAUA		siRNA23	ShortStack
ath-b10r1-17070	Arabidopsis thaliana (thale cress) 10	1:12327719-12327976	+	182	0.55	AGUGAAUUUGCUGUAGAAAUAUA		siRNA23	ShortStack
ath-b10r1-18784	Arabidopsis thaliana (thale cress) 10	1:21290896-21290927	+	173	0.53	CCGACUUUAGCUCAGUUGGUAGA		siRNA23	ShortStack
ath-b10r1-18822	Arabidopsis thaliana (thale cress) 10	1:21505880-21506191	+	400	1.22	UUCAUGGACAUUGAUAAGAUCUU		siRNA23	ShortStack
ath-b10r1-19450	Arabidopsis thaliana (thale cress) 10	1:25478737-25481181	-	517	1.57	GUUCUGUGAUGAAGUCUGAGAUC		siRNA23	ShortStack
ath-b10r1-5231	Arabidopsis thaliana (thale cress) 10	2:9920001-9920182	+	187	0.57	AUGGACGGAAUGACAAAGUCAUU	miR5016	siRNA23	ShortStack
ath-b10r1-6765	Arabidopsis thaliana (thale cress) 10	3:647045-647207	+	553	1.68	UCUCAUGUGAUCUCUUACUUCCA		siRNA23	ShortStack
ath-b10r1-6844	Arabidopsis thaliana (thale cress) 10	3:1306584-1306662	-	8,372	25.43	UAGGUCAUGCUGGUAGUUUCACC	miR167	siRNA23	ShortStack
ath-b10r1-6846	Arabidopsis thaliana (thale cress) 10	3:1308394-1308720	.	3,661	11.12	UCCGGAACUAAGUGGCUUACAUA		siRNA23	ShortStack
ath-b10r1-7342	Arabidopsis thaliana (thale cress) 10	3:4727085-4727139	.	926	2.81	ACACAAAGAUUGCUUCAGGCCUU		siRNA23	ShortStack
ath-b10r1-7344	Arabidopsis thaliana (thale cress) 10	3:4728729-4728782	.	992	3.01	ACACAAAGAUUGCUUCAGGCCUU		siRNA23	ShortStack
ath-b10r1-7345	Arabidopsis thaliana (thale cress) 10	3:4729534-4729586	.	938	2.85	ACACAAAGAUUGCUUCAGGCCUU		siRNA23	ShortStack
ath-b10r1-7826	Arabidopsis thaliana (thale cress) 10	3:8038799-8039211	-	200	0.61	CACCGGAAAACAACCUCAGAAAC		siRNA23	ShortStack
ath-b10r1-8134	Arabidopsis thaliana (thale cress) 10	3:9719077-9719436	+	424	1.29	UCCCGUAACUUAGAUUAUCUCUA		siRNA23	ShortStack
ath-b10r1-9015	Arabidopsis thaliana (thale cress) 10	3:14182369-14182869	.	286	0.87	CAAAGAGAGCUCUCCGAUGAAUA		siRNA23	ShortStack
ath-b10r1-9016	Arabidopsis thaliana (thale cress) 10	3:14183062-14183481	+	222	0.67	GAAAAUUAUAUGUUCGGACAUUA		siRNA23	ShortStack
ath-b10r1-9882	Arabidopsis thaliana (thale cress) 10	3:18705109-18705718	.	4,811	14.61	UAACCAAACGGUCGUGACAUAUA		siRNA23	ShortStack
ath-b10r1-1921	Arabidopsis thaliana (thale cress) 10	4:9053433-9053550	-	179	0.54	UGAUGGUAAUUACUACUCGGAUA		siRNA23	ShortStack
ath-b10r1-3207	Arabidopsis thaliana (thale cress) 10	4:18361784-18362417	-	6,389	19.40	GAAAGGAAUUUGCGGUAGAUAUA		siRNA23	ShortStack
ath-b10r1-13402	Arabidopsis thaliana (thale cress) 10	5:15714843-15715186	-	3,688	11.20	CGAUAGACUUGACACAUGGCAUA		siRNA23	ShortStack
ath-b10r1-14671	Arabidopsis thaliana (thale cress) 10	5:23392955-23393610	-	9,258	28.12	UGAGACUGUUGGUUUAUGCCACA		siRNA23	ShortStack
ath-b10r1-14792	Arabidopsis thaliana (thale cress) 10	5:24210765-24211122	-	321	0.98	AGAAUCUUGAUGAUGCUGCAUUU		siRNA23	ShortStack