het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Arabidopsis thaliana (thale cress) genome build 10 (ath-b10)

TAIR10 assembly of Arabidopsis thaliana Col-0 ecotype from Phytozome.

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ath-b10r1-15199Arabidopsis thaliana (thale cress) 101:28511-28808+7122.16UUUUCUUCUACUUCUUGCACAmiR838MIRNAShortStack
ath-b10r1-15218Arabidopsis thaliana (thale cress) 101:78892-79165-2,344,1037,119.35UCGGACCAGGCUUCAUCCCCCmiR165MIRNAShortStack
ath-b10r1-15487Arabidopsis thaliana (thale cress) 101:2165568-2165697+1,6014.86UCACUCCUCUUCUUCUUGAUGmiR847MIRNAShortStack
ath-b10r1-15856Arabidopsis thaliana (thale cress) 101:4820257-4820496-6972.12UAACUAUUUUGAGAAGAAGUGmiR830MIRNAShortStack
ath-b10r1-16084Arabidopsis thaliana (thale cress) 101:6520958-6521104+1,6505.01AAACGAACAAAAAACUGAUGGmiR837MIRNAShortStack
ath-b10r1-16533Arabidopsis thaliana (thale cress) 101:9363200-9363360-1920.58CUGAAGUGUUUGGGGGAACUCmiR395MIRNAShortStack
ath-b10r1-16682Arabidopsis thaliana (thale cress) 101:10227054-10227187+10,73632.61GGGUAAGAUCUCUAUUGGCAGGmiR399MIRNAShortStack
ath-b10r1-17256Arabidopsis thaliana (thale cress) 101:13067130-13067415+12,70338.58UUUGCUUCCAGCUUUUGUCUCCmiR773MIRNAShortStack
ath-b10r1-18201Arabidopsis thaliana (thale cress) 101:18026835-18027038-27,56083.70UGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
ath-b10r1-18568Arabidopsis thaliana (thale cress) 101:20039459-20039598-2,0136.11GCAAGUUGACCUUGGCUCUGUmiR169MIRNAShortStack
ath-b10r1-18569Arabidopsis thaliana (thale cress) 101:20041455-20041699+1,1033.35GCAAGUUGACUUUGGCUCUGUmiR169MIRNAShortStack
ath-b10r1-18690Arabidopsis thaliana (thale cress) 101:20772222-20772296+18,43455.99CCCCAAAUGUAGACAAAGCAmiR158MIRNAShortStack
ath-b10r1-18934Arabidopsis thaliana (thale cress) 101:22149621-22149833+1,6695.07UCUCUCUGUUGUGAAGUCAAAmiR859MIRNAShortStack
ath-b10r1-18988Arabidopsis thaliana (thale cress) 101:22577007-22577222+2,2906.96UCAUGGUCAGAUCCGUCAUCCmiR842MIRNAShortStack
ath-b10r1-19122Arabidopsis thaliana (thale cress) 101:23345368-23345503-6,05118.38UGCCAAAGGAGAGUUGCCCUGmiR399MIRNAShortStack
ath-b10r1-19383Arabidopsis thaliana (thale cress) 101:24913198-24913344-112,814342.63GCUCUCUAGCCUUCUGUCAUCmiR157MIRNAShortStack
ath-b10r1-19386Arabidopsis thaliana (thale cress) 101:24921094-24921204+35,464107.71GCUCUCUAGCCUUCUGUCAUCmiR157MIRNAShortStack
ath-b10r1-19555Arabidopsis thaliana (thale cress) 101:26269858-26270079-3060.93CUGAAGUGUUUGGGGGAACUCmiR395MIRNAShortStack
ath-b10r1-19556Arabidopsis thaliana (thale cress) 101:26272785-26272884-2450.74CUGAAGUGUUUGGGGGAACUCmiR395MIRNAShortStack
ath-b10r1-19557Arabidopsis thaliana (thale cress) 101:26273870-26274080+1,0963.33CUGAAGUGUUUGGGGGGACUCmiR395MIRNAShortStack
ath-b10r1-19607Arabidopsis thaliana (thale cress) 101:26638005-26638190+1,3344.05UACGCAUUGAGUUUCGUUGCUUmiR777MIRNAShortStack
ath-b10r1-19783Arabidopsis thaliana (thale cress) 101:28056779-28056971-3000.91UUAACAAUUUCAAGCAAAGAAMIRNAShortStack
ath-b10r1-3514Arabidopsis thaliana (thale cress) 102:1040928-1041053+7,80423.70UGUGUUCUCAGGUCACCCCUAMIRNAShortStack
ath-b10r1-4932Arabidopsis thaliana (thale cress) 102:8432655-8432799+1,0073.06UUUUACUGCUACUUGUGUUCCmiR5012MIRNAShortStack
ath-b10r1-5606Arabidopsis thaliana (thale cress) 102:11942837-11943136-11,42834.71AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
ath-b10r1-5958Arabidopsis thaliana (thale cress) 102:14442986-14443087-3,58310.88GGGCGAAUACUCCUAUGGCAGAmiR399MIRNAShortStack
ath-b10r1-5959Arabidopsis thaliana (thale cress) 102:14445008-14445107+10,22231.05UGCCAAAGGAGAUUUGCCCGGmiR399MIRNAShortStack
ath-b10r1-6126Arabidopsis thaliana (thale cress) 102:15611873-15611982+2,5877.86UGAGAUGAAAUCUUUGAUUGGmiR1886MIRNAShortStack
ath-b10r1-6191Arabidopsis thaliana (thale cress) 102:16061861-16062069+137,787418.48AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
ath-b10r1-6220Arabidopsis thaliana (thale cress) 102:16340272-16340431+24,06773.10GCGUAUGAGGAGCCAUGCAUAmiR160MIRNAShortStack
ath-b10r1-6260Arabidopsis thaliana (thale cress) 102:16652014-16652239+1,7995.46AUCAUGCUAUCUCUUUGGAUUmiR393MIRNAShortStack
ath-b10r1-6611Arabidopsis thaliana (thale cress) 102:19414958-19415242+247,840752.72UUAGAUUCACGCACAAACUCGmiR403MIRNAShortStack
ath-b10r1-6629Arabidopsis thaliana (thale cress) 102:19520755-19520870+33,189100.80UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
ath-b10r1-6657Arabidopsis thaliana (thale cress) 102:19686954-19687135+1,8185.52UUGUUUUGGAUCUUAGAUACAmiR5650MIRNAShortStack
ath-b10r1-7053Arabidopsis thaliana (thale cress) 103:2854296-2854484+2,1366.49GUCCUCGGGAUGCGGAUUACCmiR2111MIRNAShortStack
ath-b10r1-7172Arabidopsis thaliana (thale cress) 103:3599690-3599904-5491.67AGAAUCUUGAUGAUGCUGCAGmiR172MIRNAShortStack
ath-b10r1-7363Arabidopsis thaliana (thale cress) 103:4805690-4805945-8,34925.36GCAAGUUGACCUUGGCUCUGCmiR169MIRNAShortStack
ath-b10r1-7459Arabidopsis thaliana (thale cress) 103:5496873-5497093-7242.20UUGGUAGUGGAUAAGGGGGCAmiR5023MIRNAShortStack
ath-b10r1-7460Arabidopsis thaliana (thale cress) 103:5500038-5500147-9792.97UCUUUCUGCAAACGCCUUGGAmiR2934MIRNAShortStack
ath-b10r1-7584Arabidopsis thaliana (thale cress) 103:6244524-6244790-3,032,0309,208.68UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
ath-b10r1-7609Arabidopsis thaliana (thale cress) 103:6488237-6488478+7652.32AUUGUCGGCACUUGAGAAUGUmiR868MIRNAShortStack
ath-b10r1-7841Arabidopsis thaliana (thale cress) 103:8108025-8108228+1,502,2254,562.46UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
ath-b10r1-8172Arabidopsis thaliana (thale cress) 103:9875816-9876065-7512.28UAGCCAAGGAUGACUUGCCUGAmiR169MIRNAShortStack
ath-b10r1-9742Arabidopsis thaliana (thale cress) 103:17838076-17838257-7412.25GAUGGAUAUGUCUUCAAGGACmiR861MIRNAShortStack
ath-b10r1-9947Arabidopsis thaliana (thale cress) 103:19073434-19073560+13,07239.70UGAUUGAGCCGCGCCAAUAUCmiR171MIRNAShortStack
ath-b10r1-10055Arabidopsis thaliana (thale cress) 103:19659295-19659427-6,53919.86UGAGCCUCUGUGGUAGCCCUCAmiR771MIRNAShortStack
ath-b10r1-10056Arabidopsis thaliana (thale cress) 103:19659572-19659717-2,5877.86UCUCGGUUCGCGAUCCACAAGmiR851MIRNAShortStack
ath-b10r1-10184Arabidopsis thaliana (thale cress) 103:20587917-20588107+7,01821.32AGAAUCUUGAUGAUGCUGCAGmiR172MIRNAShortStack
ath-b10r1-10579Arabidopsis thaliana (thale cress) 103:23406171-23406358+350,3081,063.93UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
ath-b10r1-416Arabidopsis thaliana (thale cress) 104:1340454-1340609+6632.01UAGUCCGGUUUUGGAUACGUGmiR826MIRNAShortStack
ath-b10r1-1424Arabidopsis thaliana (thale cress) 104:6546622-6546859-3281.00AAUUGGGUUUAUGCUAGAGUUmiR5028MIRNAShortStack
ath-b10r1-1720Arabidopsis thaliana (thale cress) 104:7878525-7878750-19,49159.20UCAUUGAGUGCAUCGUUGAUGmiR397MIRNAShortStack
ath-b10r1-1818Arabidopsis thaliana (thale cress) 104:8460534-8460755+2500.76UCUGUUGAAUUCUUGCACUAGmiR4221MIRNAShortStack
ath-b10r1-2267Arabidopsis thaliana (thale cress) 104:11370268-11370440+1,9355.88CGUACUAAGUAGAGUCUAAGAGAAmiR1887MIRNAShortStack
ath-b10r1-2282Arabidopsis thaliana (thale cress) 104:11483001-11483216-2,1226.45GCAAGUUGACCUUGGCUCUGUmiR169MIRNAShortStack
ath-b10r1-2353Arabidopsis thaliana (thale cress) 104:11962897-11963076-7572.30AUUUGUUACUAAUUUGGAAUGmiR5017MIRNAShortStack
ath-b10r1-2376Arabidopsis thaliana (thale cress) 104:12214083-12214162-1,6785.10UCGCUCUGAUACCAAAUUGAUGmiR845MIRNAShortStack
ath-b10r1-2377Arabidopsis thaliana (thale cress) 104:12217455-12217526-12,31937.41CGGCUCUGAUACCAAUUGAUGmiR845MIRNAShortStack
ath-b10r1-2397Arabidopsis thaliana (thale cress) 104:12352934-12353138+373,2831,133.71UUGGACUGAAGGGAGCUCCCUmiR319MIRNAShortStack
ath-b10r1-2620Arabidopsis thaliana (thale cress) 104:13846950-13847128+3971.21UCUUGCUUAAAUGAGUAUUCCAmiR828MIRNAShortStack
ath-b10r1-10622Arabidopsis thaliana (thale cress) 105:287503-287768+82,409250.29UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
ath-b10r1-10642Arabidopsis thaliana (thale cress) 105:400395-400537+6061.84AUCCUCGGGAUACAGUUUACCmiR2111MIRNAShortStack
ath-b10r1-10751Arabidopsis thaliana (thale cress) 105:1188127-1188358-9,50528.87AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
ath-b10r1-10963Arabidopsis thaliana (thale cress) 105:2838603-2838795+14,17443.05UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
ath-b10r1-10964Arabidopsis thaliana (thale cress) 105:2840565-2840734+6,18418.78UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
ath-b10r1-11095Arabidopsis thaliana (thale cress) 105:3867191-3867378+3,2249.79UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
ath-b10r1-11180Arabidopsis thaliana (thale cress) 105:4479353-4479627-4,79914.58UGGGACUGCCUAAGCUAAAGGCUUmiR848MIRNAShortStack
ath-b10r1-11347Arabidopsis thaliana (thale cress) 105:5590304-5590451-2170.66AAUCGCACAUCUGUUAGGAGGMIRNAShortStack
ath-b10r1-11687Arabidopsis thaliana (thale cress) 105:7740527-7740722-395,5581,201.36UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
ath-b10r1-11837Arabidopsis thaliana (thale cress) 105:8527423-8527693+14,12042.88CAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
ath-b10r1-11990Arabidopsis thaliana (thale cress) 105:9136028-9136255+52,192158.51UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
ath-b10r1-12860Arabidopsis thaliana (thale cress) 105:13611731-13611961+695,0612,110.99UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
ath-b10r1-13490Arabidopsis thaliana (thale cress) 105:16157833-16158054-1,3844.20ACAAAAUCCGUCUUUGAAGAmiR866MIRNAShortStack
ath-b10r1-13768Arabidopsis thaliana (thale cress) 105:17516221-17516440+71,824218.14UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
ath-b10r1-13914Arabidopsis thaliana (thale cress) 105:18358749-18358901-37,573114.11UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
ath-b10r1-14401Arabidopsis thaliana (thale cress) 105:21395460-21395718-3971.21UUAGAAUGUGAUGCAAAACUUmiR870MIRNAShortStack
ath-b10r1-14580Arabidopsis thaliana (thale cress) 105:22596926-22597203-15,48047.02UUGACAGAAGAAAGAGAGCACmiR156MIRNAShortStack
ath-b10r1-14758Arabidopsis thaliana (thale cress) 105:23988438-23988602+1,7755.39GCAGCACCAUUAAGAUUCACmiR172MIRNAShortStack
ath-b10r1-14801Arabidopsis thaliana (thale cress) 105:24293151-24293243+15,76647.88UUCGCAGGAGAGAUAGCGCCAmiR391MIRNAShortStack
ath-b10r1-14964Arabidopsis thaliana (thale cress) 105:25504811-25504908+2,2626.87UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack