Data from Lunardon et al. (2020)

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Genome

Hordeum vulgare (Barley) genome build 1 (hvu-b1)

Version ASM32608v1 of Hordeum vulgare cv. Morex from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Locus Type	Annotation Source
hvu-b1r1-320	Hordeum vulgare (Barley) 1	1-1:36799671-36799748	+	265	2.11	AGCAAGAGAGACGGAGAGGUAGA	siRNA23	ShortStack
hvu-b1r1-590	Hordeum vulgare (Barley) 1	1-1:74269321-74269384	.	57	0.45	UUUUUUGGAUGGGUUAGAUGCAU	siRNA23	ShortStack
hvu-b1r1-1479	Hordeum vulgare (Barley) 1	1-1:242195238-242195375	-	367	2.92	CUUUCUGAACUCUUCUAUUCCAG	siRNA23	ShortStack
hvu-b1r1-2968	Hordeum vulgare (Barley) 1	1-2:198068210-198068255	.	22	0.18	AUUGUAAAGCUCGUCGAAAAUGAA	siRNA23	ShortStack
hvu-b1r1-3022	Hordeum vulgare (Barley) 1	1-2:199423991-199424014	+	95	0.76	AGAUUGGCUGAGAGGGUGGCUCC	siRNA23	ShortStack
hvu-b1r1-3193	Hordeum vulgare (Barley) 1	1H_unordered:2823055-2823079	+	123	0.98	GUCUGGGUGGUGUAGUUGGUUAU	siRNA23	ShortStack
hvu-b1r1-4377	Hordeum vulgare (Barley) 1	2-1:75141349-75141375	+	108	0.86	AAGUUGGAUAUAUCAAAGGCGUU	siRNA23	ShortStack
hvu-b1r1-4490	Hordeum vulgare (Barley) 1	2-1:98425790-98425814	-	657	5.23	AUGAUUUGUACUUAUUUCUGUAU	siRNA23	ShortStack
hvu-b1r1-5443	Hordeum vulgare (Barley) 1	2-2:118162482-118162510	-	78	0.62	AAUCCACAAUUCAUCGGAUCUCA	siRNA23	ShortStack
hvu-b1r1-6398	Hordeum vulgare (Barley) 1	2-2:197622013-197622036	+	2,232	17.75	CGGAGGCGCGCGAUGGUGGGCUC	siRNA23	ShortStack
hvu-b1r1-6670	Hordeum vulgare (Barley) 1	2-2:208701025-208701083	+	21	0.17	AAGGACUUUAGUCCCAGUUGGUU	siRNA23	ShortStack
hvu-b1r1-9379	Hordeum vulgare (Barley) 1	3-1:255063300-255063323	-	57	0.45	AGCACGAGCAAGAAGAUCCUGGA	siRNA23	ShortStack
hvu-b1r1-11194	Hordeum vulgare (Barley) 1	3-2:177822786-177822819	+	212	1.69	UUACUGAACGCGGUUGAUGUAGU	siRNA23	ShortStack
hvu-b1r1-12374	Hordeum vulgare (Barley) 1	3HL_unordered:4499789-4499814	-	240	1.91	UUUACUGACUGUGUAUUUUCCAG	siRNA23	ShortStack
hvu-b1r1-15024	Hordeum vulgare (Barley) 1	4-2:159316488-159316513	-	30	0.24	AUGUAAAAGGCGUCUGUACAAAA	siRNA23	ShortStack
hvu-b1r1-17382	Hordeum vulgare (Barley) 1	5-1:114913741-114913772	+	592	4.71	GUAGAAGUGUAGGGUAUGAAAGG	siRNA23	ShortStack
hvu-b1r1-17616	Hordeum vulgare (Barley) 1	5-1:135739304-135739462	-	54,836	436.07	AUUGUAUCCUUAACCAUUUCUUUU	siRNA23	ShortStack
hvu-b1r1-18194	Hordeum vulgare (Barley) 1	5-2:52782012-52782039	-	30	0.24	CAAAGAUGUGACUGAUGGCAAAU	siRNA23	ShortStack
hvu-b1r1-19039	Hordeum vulgare (Barley) 1	5-2:168681871-168682002	-	320	2.55	GAAAAUGAGGAAUUGUGACAGGU	siRNA23	ShortStack
hvu-b1r1-19656	Hordeum vulgare (Barley) 1	5-2:207823848-207823915	+	18	0.14	AGUGACUAGAUAGGAGAGAGAAAG	siRNA23	ShortStack
hvu-b1r1-20498	Hordeum vulgare (Barley) 1	5HL_unordered:3643606-3643636	+	44	0.35	GUCGCUUCAUGCGUGACUCGCCGG	siRNA23	ShortStack
hvu-b1r1-21114	Hordeum vulgare (Barley) 1	6-1:52124791-52124849	+	24	0.19	AAACAAACAGGAUGGACUUUUAGG	siRNA23	ShortStack
hvu-b1r1-21382	Hordeum vulgare (Barley) 1	6-1:77529433-77529458	-	33	0.26	CGUGGUUCGGCACUAGAUCGGAA	siRNA23	ShortStack
hvu-b1r1-21535	Hordeum vulgare (Barley) 1	6-1:117498388-117498493	.	35	0.28	CACGAUCGGGGUUGUUAUGGGAA	siRNA23	ShortStack
hvu-b1r1-21643	Hordeum vulgare (Barley) 1	6-1:165493973-165494054	+	38	0.30	AUAUAGGUAGUGGCAUGACAAGG	siRNA23	ShortStack
hvu-b1r1-22091	Hordeum vulgare (Barley) 1	6-1:258247151-258247337	.	148	1.18	UUUAAGAACCGUGUGAGACAGCG	siRNA23	ShortStack
hvu-b1r1-22098	Hordeum vulgare (Barley) 1	6-1:259148453-259148479	-	39	0.31	UGAUCAGGAGUAGUUAGGAGGUU	siRNA23	ShortStack
hvu-b1r1-23940	Hordeum vulgare (Barley) 1	6-2:224444762-224444790	-	27,712	220.37	GGGGAUGUAGCUCAAAUGGUAGA	siRNA23	ShortStack
hvu-b1r1-24295	Hordeum vulgare (Barley) 1	7-1:8194435-8194452	-	5	0.04	AAUCUAGCACGGGAGACAAGAGCC	siRNA23	ShortStack
hvu-b1r1-26666	Hordeum vulgare (Barley) 1	7-2:34050709-34050737	+	46	0.37	UGACGACCACGAACAGAGGAAGC	siRNA23	ShortStack
hvu-b1r1-27317	Hordeum vulgare (Barley) 1	7-2:221011969-221012234	+	966	7.68	AGAGGACAUGUACAUUGAUCACA	siRNA23	ShortStack
hvu-b1r1-27719	Hordeum vulgare (Barley) 1	7-2:255481646-255481855	-	133	1.06	UUUUUUGGAUGGGUUAGAUGCAU	siRNA23	ShortStack
hvu-b1r1-28975	Hordeum vulgare (Barley) 1	morex_contig_1581474:1033-1056	.	53	0.42	UACCUGGUUGAUCCUGCCAGUAG	siRNA23	ShortStack
hvu-b1r1-29234	Hordeum vulgare (Barley) 1	morex_contig_2598016:37-62	+	113	0.90	GAGGACCUUUAGAACCGGUUGGU	siRNA23	ShortStack