het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Hordeum vulgare (Barley) genome build 1 (hvu-b1)

Version ASM32608v1 of Hordeum vulgare cv. Morex from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
hvu-b1r1-560Hordeum vulgare (Barley) 11-1:71393716-71393792+2,37418.88GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-1207Hordeum vulgare (Barley) 11-1:158071266-158071324+4,84538.53GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-1605Hordeum vulgare (Barley) 11-2:23319400-23319421-560.45UCUCCCCGGCAACGGCGCCAsiRNA20ShortStack
hvu-b1r1-1665Hordeum vulgare (Barley) 11-2:38188207-38188283-2,02616.11GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-2059Hordeum vulgare (Barley) 11-2:112776997-112777022+6415.10GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-3832Hordeum vulgare (Barley) 12-1:11854674-11854757-2,07716.52GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-3843Hordeum vulgare (Barley) 12-1:13276247-13276268+320.25CUGGCUGGAUCAUACUUUUUsiRNA20ShortStack
hvu-b1r1-4405Hordeum vulgare (Barley) 12-1:80231210-80231230-1090.87UUUGGAUUGAAGGGAUAUUUsiRNA20ShortStack
hvu-b1r1-4703Hordeum vulgare (Barley) 12-2:26332535-26332554-1751.39AUUAAAACUCAAAUGAAUUGsiRNA20ShortStack
hvu-b1r1-5057Hordeum vulgare (Barley) 12-2:89091833-89091852+1421.13AAAGGGGAAAGAUAUUGGCAsiRNA20ShortStack
hvu-b1r1-5144Hordeum vulgare (Barley) 12-2:95540637-95540724+2,39519.05AUCAGGAGAGAUGACACCGGmiR1432siRNA20ShortStack
hvu-b1r1-5912Hordeum vulgare (Barley) 12-2:158066113-158066132-2061.64UGACAGAAGAGAGUGAGCAUmiR156siRNA20ShortStack
hvu-b1r1-6051Hordeum vulgare (Barley) 12-2:170537929-170538216-1,0448.30UAAAUGUUGGAAGAACAUUCsiRNA20ShortStack
hvu-b1r1-6559Hordeum vulgare (Barley) 12-2:205035613-205035644+6214.94GUCUGGGUGGUGUAGUUGGUsiRNA20ShortStack
hvu-b1r1-7066Hordeum vulgare (Barley) 12-2:229867667-229867734-900.72UGAAGUGUUUGGGGGAACUCmiR395siRNA20ShortStack
hvu-b1r1-7189Hordeum vulgare (Barley) 12-2:240269642-240269703-4,99639.73GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-7795Hordeum vulgare (Barley) 12-2:275746841-275746872-1,2299.77GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-8813Hordeum vulgare (Barley) 13-1:46866541-46866561-3012.39AUUCAUGUGUAGGAUAGGUGsiRNA20ShortStack
hvu-b1r1-10348Hordeum vulgare (Barley) 13-2:104874504-104874643-33,529266.63GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
hvu-b1r1-10770Hordeum vulgare (Barley) 13-2:133610720-133610739-490.39GGCGGAUGUACCCCAGUGGAsiRNA20ShortStack
hvu-b1r1-11610Hordeum vulgare (Barley) 13-2:213865184-213865233+6885.47UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
hvu-b1r1-12439Hordeum vulgare (Barley) 13HS_unordered:177564-177583-400.32UCGGGAAAGGGCAGACGGCGsiRNA20ShortStack
hvu-b1r1-13131Hordeum vulgare (Barley) 14-1:138880566-138880588+2892.30AAGGAGAACGUAUACUCACCsiRNA20ShortStack
hvu-b1r1-13694Hordeum vulgare (Barley) 14-1:241797614-241797646+4233.36AUUCCUGAACUCUUAAGUAGsiRNA20ShortStack
hvu-b1r1-13718Hordeum vulgare (Barley) 14-1:242757894-242757915-13,881110.39GGCGGAUGUAGCCAAGUGGGsiRNA20ShortStack
hvu-b1r1-15803Hordeum vulgare (Barley) 14-2:227697774-227697808-1,67213.30GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-15806Hordeum vulgare (Barley) 14-2:227742771-227742796+6254.97GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-15932Hordeum vulgare (Barley) 14HL_unordered:1906609-1906781+4,67637.19GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-16507Hordeum vulgare (Barley) 15-1:39869873-39870041-4,690,04737,296.53GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
hvu-b1r1-16879Hordeum vulgare (Barley) 15-1:74799379-74799558+87,413695.13GCGUCUGUAGUCCAACGGUUsiRNA20ShortStack
hvu-b1r1-17149Hordeum vulgare (Barley) 15-1:94665207-94665227-860.68GGAACCUGGCUCUGAUACCAmiR8155siRNA20ShortStack
hvu-b1r1-17714Hordeum vulgare (Barley) 15-1:181276390-181276570-6595.24UUGAAGAUUAGGUGGCGGCGsiRNA20ShortStack
hvu-b1r1-18448Hordeum vulgare (Barley) 15-2:97242147-97242173-17,430138.61UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
hvu-b1r1-18498Hordeum vulgare (Barley) 15-2:108085837-108086002+48,670387.04GCGUCUGUAGUCCAACGGUUsiRNA20ShortStack
hvu-b1r1-18835Hordeum vulgare (Barley) 15-2:147427374-147427458+4,05132.22GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-18932Hordeum vulgare (Barley) 15-2:155980719-155980797+3,40327.06GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-20177Hordeum vulgare (Barley) 15-2:236077281-236077308-2752.19GUCUGGGUGGUGUAGUUGGUsiRNA20ShortStack
hvu-b1r1-20562Hordeum vulgare (Barley) 15HL_unordered:6157338-6157361+2331.85AGAAGAAGCACCGGCUAACUsiRNA20ShortStack
hvu-b1r1-21670Hordeum vulgare (Barley) 16-1:167522959-167523004+2351.87UGACAGAAGAGAGUGAGCAUmiR156siRNA20ShortStack
hvu-b1r1-23389Hordeum vulgare (Barley) 16-2:184189830-184189914+7706.12GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
hvu-b1r1-24543Hordeum vulgare (Barley) 17-1:24721512-24721642+394,9333,140.62GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
hvu-b1r1-24677Hordeum vulgare (Barley) 17-1:35301738-35301781+1311.04CAGGACUGUGAACGUACGGCsiRNA20ShortStack
hvu-b1r1-25162Hordeum vulgare (Barley) 17-1:97910896-97910978+26,507210.79GGGGAUGUAGCUCAAAUGGUsiRNA20ShortStack
hvu-b1r1-28743Hordeum vulgare (Barley) 17HS_unordered:5795474-5795494-2822.24AUUCAUGUGUAGGAUAGGUGsiRNA20ShortStack
hvu-b1r1-29314Hordeum vulgare (Barley) 1morex_contig_402940:838-860+7856.24GUUCCCCGGCAACGGCGCCAmiR8175siRNA20ShortStack