Data from Lunardon et al. (2020)

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Genome

Cuscuta campestris (Field Dodder) genome build 0.32 (ccm-b0.32)

Version 0.32 assembly of the Cuscuta campestris genome from Vogel et al. 2018

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
ccm-b0.32r1-9097	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold1:2071547-2071609	-	175	2.13	GUGUGCUGAAAGAUUGCUUCUUGC		nearMIRNA	ShortStack
ccm-b0.32r1-9934	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold1:4555118-4555234	-	84	1.02	UUGACAGAAGAGAGAGAGCAC	miR156	nearMIRNA	ShortStack
ccm-b0.32r1-20675	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold10:1578458-1578581	-	63	0.77	UCCCGGAAUAGGACUUUGCACUA		nearMIRNA	ShortStack
ccm-b0.32r1-85627	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold114:113993-114239	-	81	0.99	ACAAUAAGAUACUUGGGCUGAACC		nearMIRNA	ShortStack
ccm-b0.32r1-91234	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold130:74635-74807	+	116	1.41	UGCAUUUACACCUGCACCUGC		nearMIRNA	ShortStack
ccm-b0.32r1-91934	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold132a:729877-730171	-	207	2.52	AAGUUGAUUUUGACUGUAGAGUCA		nearMIRNA	ShortStack
ccm-b0.32r1-93283	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold136:161008-161064	-	43	0.52	UAAAAAUGUGGAGCUCCUAUU		nearMIRNA	ShortStack
ccm-b0.32r1-93561	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold137:92693-92749	-	99	1.20	CCACUCGGCAGCCACUGACGG		nearMIRNA	ShortStack
ccm-b0.32r1-93570	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold137:132126-132147	+	60	0.73	CCACUCGGCAGCCACUGACGG		nearMIRNA	ShortStack
ccm-b0.32r1-24382	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold13b:2320681-2320942	-	110	1.34	AAGGACUCCUGAAGUAUAUUUUGG		nearMIRNA	ShortStack
ccm-b0.32r1-99266	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold157:223986-224163	+	130	1.58	UGGAAAUCAAUUAUGUGGAUU		nearMIRNA	ShortStack
ccm-b0.32r1-103926	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold176:581321-581517	-	80	0.97	ACCGAAAUGUUUGUGACUCUAGCA		nearMIRNA	ShortStack
ccm-b0.32r1-105418	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold182:630247-630391	-	62	0.75	AAAUACGACUUAAGAAUGACCAGU		nearMIRNA	ShortStack
ccm-b0.32r1-107305	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold191:527491-527578	+	91	1.11	UCCAUAUGUAUUGAGCUGUU		nearMIRNA	ShortStack
ccm-b0.32r1-10968	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold2:2607021-2607296	+	97	1.18	AGAGAAAAGUACUAAAAUAGGAUU		nearMIRNA	ShortStack
ccm-b0.32r1-109289	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold202:434976-435043	+	78	0.95	AUGUGAUUGUCAUUUGUGGAGACA		nearMIRNA	ShortStack
ccm-b0.32r1-113842	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold228b:96654-96767	+	49	0.60	AAAUUGUAGCAUCUUUUGAACGUG		nearMIRNA	ShortStack
ccm-b0.32r1-114921	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold236:345932-346228	+	52	0.63	AGUAUCUGUAUUUGCUUGGUGUAC		nearMIRNA	ShortStack
ccm-b0.32r1-114947	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold236:416190-416366	-	58	0.71	AGGGGAAUUUGAGAUUUUGACACU		nearMIRNA	ShortStack
ccm-b0.32r1-115284	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold239a:175532-175627	+	390	4.74	UUUGACAUAAUUUCUGGUCCU		nearMIRNA	ShortStack
ccm-b0.32r1-34607	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold24:422280-422410	-	175	2.13	AUCUGUAUUUAUCUGUGUUUGCCU		nearMIRNA	ShortStack
ccm-b0.32r1-115445	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold240:163511-163713	-	4,080	49.63	UAAGUCGUUCAUGUGCUUCGU		nearMIRNA	ShortStack
ccm-b0.32r1-117094	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold251:289626-289864	-	100	1.22	CGUGGACCUUUCAAGCUUCA		nearMIRNA	ShortStack
ccm-b0.32r1-117182	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold252:311753-311922	+	102	1.24	AUUUUGGGCGUGGUGUAUGUU		nearMIRNA	ShortStack
ccm-b0.32r1-118914	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold267:32205-32500	-	97	1.18	AUAGAGUCUGGAUUGAAUACACCC		nearMIRNA	ShortStack
ccm-b0.32r1-38277	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold28:2169929-2170053	+	67	0.82	AUGUAAUAGUAGAUAAUUGAAGGU		nearMIRNA	ShortStack
ccm-b0.32r1-40172	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold30:2933165-2933301	-	1,190	14.48	UCGGACCAGGCUUCAUUCCUC	miR166	nearMIRNA	ShortStack
ccm-b0.32r1-40873	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold31:1282704-1282974	+	140	1.70	AAACAUGUCGGACUUUUUGGGACA		nearMIRNA	ShortStack
ccm-b0.32r1-123726	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold321b:310828-311118	+	126	1.53	UUUUGUUUGGGACAAGGUGCC		nearMIRNA	ShortStack
ccm-b0.32r1-42762	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold33:574409-574539	+	50	0.61	UUGUUUGUGACUCUAGCAUUACA		nearMIRNA	ShortStack
ccm-b0.32r1-45100	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold35:3555552-3555692	-	47	0.57	AACGAUCUUUUUGGGAUGGAGGGA		nearMIRNA	ShortStack
ccm-b0.32r1-45181	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold35:3790681-3790951	+	100	1.22	CACGUGCUCCCCUUCUCCAAC	miR164	nearMIRNA	ShortStack
ccm-b0.32r1-46774	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold37:2265934-2266165	+	73	0.89	AUUGUUUUGUAGAACUUUUGACGU		nearMIRNA	ShortStack
ccm-b0.32r1-126883	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold384:71623-71834	+	96	1.17	ACAUGUAGAACAAUAAAACUAACA		nearMIRNA	ShortStack
ccm-b0.32r1-47582	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold39:369662-369755	-	306	3.72	UUUGACAUGAUUUCUGGUCCU		nearMIRNA	ShortStack
ccm-b0.32r1-13640	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold4:1608841-1609042	-	181	2.20	ACCGCUAGUGGCAUCGUUGGCCGG		nearMIRNA	ShortStack
ccm-b0.32r1-51722	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold44:1836673-1836936	+	106	1.29	AUUGGUUUGUGAUUACAAAGGUCU		nearMIRNA	ShortStack
ccm-b0.32r1-52766	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold45:1118421-1118561	-	119	1.45	AAGUGUCUGUAUUUCUUGGUGUAC		nearMIRNA	ShortStack
ccm-b0.32r1-54506	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold48:1471526-1471638	+	115	1.40	AGAUAGUUAAUGUCUGAGCAGCCU		nearMIRNA	ShortStack
ccm-b0.32r1-14558	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold5:653215-653387	+	320	3.89	UUGACAGAAGAGAGAGAGCAC	miR156	nearMIRNA	ShortStack
ccm-b0.32r1-130468	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold502:43493-43633	+	198	2.41	UGAAUUGUCUCUGAAGCUGAC		nearMIRNA	ShortStack
ccm-b0.32r1-56732	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold51:1575000-1575181	+	58	0.71	GCGUAUGAGGAGCCAAGCAUA	miR160	nearMIRNA	ShortStack
ccm-b0.32r1-60921	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold59:61699-61838	-	208	2.53	CUAAAUGUAACAUGUUGUUCCC		nearMIRNA	ShortStack
ccm-b0.32r1-62967	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold62:21606-21736	-	55	0.67	AUAAGUCAAAAGUAGAUAAUGAUU		nearMIRNA	ShortStack
ccm-b0.32r1-64178	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold64:685686-685718	+	85	1.03	GAUAGCCGUUUGCAAGACCUG		nearMIRNA	ShortStack
ccm-b0.32r1-17037	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold7:1043739-1043987	-	263	3.20	UACAUCUUUUUCCUACGAGCUU		nearMIRNA	ShortStack
ccm-b0.32r1-69792	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold77:1070517-1070808	-	45	0.55	UUUUAGGUGGAGAAUAAGUGU		nearMIRNA	ShortStack
ccm-b0.32r1-73093	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold84:1010107-1010143	+	48	0.58	GAACUGUUUGUUUGUGACUCUAGU		nearMIRNA	ShortStack
ccm-b0.32r1-75635	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold89c:829975-830127	+	140	1.70	CACGUGCUCCCCUUCUCCAAC	miR164	nearMIRNA	ShortStack
ccm-b0.32r1-79041	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold97:152617-152798	-	82	1.00	UAAGGGCUGUACGGUGUUCCGUGC		nearMIRNA	ShortStack
ccm-b0.32r1-79234	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold97:639872-640005	-	42	0.51	UGAUUAGUUGUGGCACAAAG		nearMIRNA	ShortStack