het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Lactuca sativa (Lettuce) genome build 8 (lsa-b8)

Version v8 of Lactuca sativa cv. Salinas from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
lsa-b8r1-128Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_0:28076098-28076296-6361.64AGGACAUUAUAGAACAUUCUAGAAnearMIRNAShortStack
lsa-b8r1-454Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:16362348-16362545+6771.74ACACACGACAAGACAGAACAGAACnearMIRNAShortStack
lsa-b8r1-461Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:16689421-16689444+35,20690.64UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
lsa-b8r1-1289Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:113222254-113222276-2,2965.91UUCACGUCCAUUGUCCCUUUCmiR6114nearMIRNAShortStack
lsa-b8r1-2430Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_2:166453846-166454020-1,2653.26AGAGGCCACGUAGAUCUGCAGACAnearMIRNAShortStack
lsa-b8r1-2478Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_2:169722938-169723102+1,9455.01ACCGAAAAGACUGUUUGAUUUGCAnearMIRNAShortStack
lsa-b8r1-3163Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:14796373-14796536+5161.33ACGAGUUCAGACGAUGUUAUAACUnearMIRNAShortStack
lsa-b8r1-3534Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:56340343-56340503-18,72948.22UCGGACCAGGCUUCAUUCCUUmiR166nearMIRNAShortStack
lsa-b8r1-3605Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:64316784-64316972+1,0552.72AUUGGUAAGAGGAUUGGUAGGAUCnearMIRNAShortStack
lsa-b8r1-4238Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:203379270-203379420-4781.23AGGAGAAUACUAUGAACAAAAAGUnearMIRNAShortStack
lsa-b8r1-4254Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:209673186-209673334-925,7262,383.35UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
lsa-b8r1-4569Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:22550862-22550992-1,9655.06ACCGGAUGUCGCAACAUGUAAAGAnearMIRNAShortStack
lsa-b8r1-4816Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:62115674-62115780-2,4316.26UCAUAGGCUCUUCUUUGUAAUUnearMIRNAShortStack
lsa-b8r1-5531Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:217374968-217375105+1,4393.71UUGAGGAUACAUGGAACAAAAUAnearMIRNAShortStack
lsa-b8r1-5968Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:337315532-337315734+3,8809.99ACCGGAAAGACUGUUUGACUUGCAnearMIRNAShortStack
lsa-b8r1-6335Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:28863446-28863708-9232.38AACGACAUGUCGUCUGGACAGGGUnearMIRNAShortStack
lsa-b8r1-6574Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:79897382-79897407-4371.13UGAUCUGGAACCCUACUUGGCnearMIRNAShortStack
lsa-b8r1-8141Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:3164965-3165042-5091.31AUACACAUCUAGGUAACGAACUUGnearMIRNAShortStack
lsa-b8r1-8230Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:13536203-13536396-3,0997.98UUGGACUGAAGGGAGCUCCCUmiR319nearMIRNAShortStack
lsa-b8r1-8426Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:35615128-35615381-2,0795.35AGAGAGAGUGUAGAGUUUAAUGGCnearMIRNAShortStack
lsa-b8r1-8816Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:124956331-124956358-6,15215.84CCCGCCUUGUAUCAACUGAAUmiR168nearMIRNAShortStack
lsa-b8r1-8817Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:124956435-124956467-7,94620.46UCGCUUGGUACAGGUCGGGAAmiR168nearMIRNAShortStack
lsa-b8r1-8932Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:144695011-144695201+1,2223.15AGAGGAUGAGUAGGAAGAAAUUUUnearMIRNAShortStack
lsa-b8r1-9004Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:156490906-156491196-2,1485.53UUGUAAUCGGCUCUCUUGAGCnearMIRNAShortStack
lsa-b8r1-9172Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:184130034-184130246-1,8864.86AUAUGUUGGAACCAAUGAUCAAGUnearMIRNAShortStack
lsa-b8r1-9183Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:185434702-185434969+1,3163.39AGAAUCGGAACCGGAACCGGAACCnearMIRNAShortStack
lsa-b8r1-9294Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:5603836-5603996+1,1943.07AAAAUGAGGACUUGUGAGGACACCnearMIRNAShortStack
lsa-b8r1-9444Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:23948185-23948465+6671.72AGGAGAAUUUGUAGAAAUAAAAUUnearMIRNAShortStack
lsa-b8r1-9782Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:67088325-67088538-9992.57AACCAAGCUCGGACUCGGUUCGGCnearMIRNAShortStack
lsa-b8r1-9896Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:89054667-89054710-2,4506.31GCUCACCCUCUAUCUGUCACUmiR156nearMIRNAShortStack
lsa-b8r1-10064Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:130036824-130036931+3,1558.12UCGGACCAGGCUUCAUUCCUUmiR166nearMIRNAShortStack
lsa-b8r1-10232Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:160252326-160252489-9752.51AGGAGGAUUAGUAGGAAUAAAACUnearMIRNAShortStack
lsa-b8r1-10450Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:190172134-190172266+9292.39AACUGACUGAAUGAGUAAUGAUGUnearMIRNAShortStack
lsa-b8r1-10668Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_8:18182212-18182234-8512.19UCCAAAGGGAUCGCAUUGAUCCmiR393nearMIRNAShortStack
lsa-b8r1-11038Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_8:59559686-59559881+79,985205.93UUGGACUGAAGGGAGCUCCCUmiR319nearMIRNAShortStack
lsa-b8r1-11074Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_8:63399797-63399971-6841.76AGGUAGGAUGAUAUGUAGGAACAnearMIRNAShortStack
lsa-b8r1-11515Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_8:119206883-119207074-1,4923.84AACCCUAGAAUCAGAUCGGACGACnearMIRNAShortStack
lsa-b8r1-11616Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_8:134021123-134021355+1,6784.32AGGGCUCUAAACGAACUGAACGUUnearMIRNAShortStack
lsa-b8r1-12119Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_8:258705767-258706029+6161.59AACGUGGACAAUAAUUUUGAGACAnearMIRNAShortStack
lsa-b8r1-12592Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:31836613-31836771+1,6534.26UCACCUCUGAAACUCAAGAACAmiR6113nearMIRNAShortStack
lsa-b8r1-13069Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:93394823-93394989-1,1432.94AUGGUAGGAGGAUGAGUAGGAAUAnearMIRNAShortStack
lsa-b8r1-13403Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:161213250-161213472+1,3853.57UCUGAACAAUUUCAAUAGUUnearMIRNAShortStack
lsa-b8r1-13608Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:192294144-192294270+8002.06UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack