het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Lactuca sativa (Lettuce) genome build 8 (lsa-b8)

Version v8 of Lactuca sativa cv. Salinas from Phytozome

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
lsa-b8r1-48Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_0:11558564-11558660+97,327250.58UUAAACAGAGAAAUCGCGGUUGMIRNAShortStack
lsa-b8r1-71Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_0:13858488-13858584+1,6824.33GCUCUCUAUGCUUCUGUCAUUmiR156MIRNAShortStack
lsa-b8r1-164Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_0:41445832-41446036-2,8307.29AUUGUUGGUUCCGGUAGAUGUUGCMIRNAShortStack
lsa-b8r1-669Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:38334216-38334346-39,985102.94UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
lsa-b8r1-809Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:48815000-48815229-6251.61UAGCCAAUGAUUUUUGCGUAMIRNAShortStack
lsa-b8r1-897Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:57637020-57637237-3,6289.34CAACAAGGUCACAUUUAUCAGGAMIRNAShortStack
lsa-b8r1-898Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:57653450-57653642-33,76086.92CAACAAGGUCACAUUUAUCAGGAMIRNAShortStack
lsa-b8r1-899Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:57690602-57690854+17,04543.88CAACAAGGUCACAUUUAUCAGGAMIRNAShortStack
lsa-b8r1-974Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:65785185-65785322+304,337783.54UCUCGGACCAGGCUUCAUUCUmiR166MIRNAShortStack
lsa-b8r1-1100Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:81853186-81853257-7151.84UGGAGAAGCAGGGUACGUGCAmiR164MIRNAShortStack
lsa-b8r1-1406Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_1:141416497-141416682+21,15654.47UGCACUGCCUCUUCCCUGGCUmiR408MIRNAShortStack
lsa-b8r1-2215Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_2:144825254-144825457-1,5323.94AUUUUACUUUGAGCAGGGACCMIRNAShortStack
lsa-b8r1-2765Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_2:192332443-192332526+7,88120.29UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAShortStack
lsa-b8r1-2858Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_2:199176746-199176868+9,25723.83UCCAAAGGGAUCGCAUUGAUCCmiR393MIRNAShortStack
lsa-b8r1-3044Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_2:215647315-215647428-6,44716.60UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
lsa-b8r1-3274Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:27466687-27466859-58,058149.48UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
lsa-b8r1-3309Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:31047608-31047716-13,45334.64GCUCAUGAUCUAUCUGUCAGCmiR156MIRNAShortStack
lsa-b8r1-3662Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:72564156-72564340-87,859226.20UUCCGAGACCACCCAUUCCAAUMIRNAShortStack
lsa-b8r1-3864Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:113207193-113207309-2,5336.52UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
lsa-b8r1-4165Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_3:193826057-193826254-11,62329.92AUUUGGCAACAACACUUGAUCAMIRNAShortStack
lsa-b8r1-5218Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:136858507-136858601+9602.47UUCUGAACUCUCUCCCUCAAUmiR1446MIRNAShortStack
lsa-b8r1-5700Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:278390633-278390712-9,24423.80UAUUGGCCUGGUUCACUCAGAmiR171MIRNAShortStack
lsa-b8r1-5836Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:307183950-307184093+2,8567.35UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
lsa-b8r1-5837Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:307184329-307184472+67,094172.74UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
lsa-b8r1-5838Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_4:307184685-307184800+41,981108.08UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
lsa-b8r1-6627Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:96622271-96622474-47,891123.30UGUGUUCUCAGGUCGCCCCUGmiR398MIRNAShortStack
lsa-b8r1-6909Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:175902905-175903001-75,870195.33UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
lsa-b8r1-6965Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:188814322-188814547+2,6336.78UUACUCUAUGAAAUACCAUCUMIRNAShortStack
lsa-b8r1-7012Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:201000803-201000894-8,76422.56UGCUCACUUCUCUUGCUGUCAGCmiR156MIRNAShortStack
lsa-b8r1-7047Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:206672210-206672296+122,125314.42UUCCACAGCUUUCUUGAACUGmiR396MIRNAShortStack
lsa-b8r1-7048Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:206731209-206731337-84,415217.33UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
lsa-b8r1-7147Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:224665671-224665814-788,0402,028.87UCGGACCAGGCUUCAUUCCUCmiR166MIRNAShortStack
lsa-b8r1-7510Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:266554035-266554222-2,4466.30AAUGACAUCUGUGAAAUUCUCAAAMIRNAShortStack
lsa-b8r1-7931Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:317416798-317416901+4,74612.22AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
lsa-b8r1-8036Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_5:329817253-329817412+1,730,7494,455.94UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
lsa-b8r1-8623Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:69839764-69839915-3,5059.02UCGGCGUUGUCGUUGCACCACMIRNAShortStack
lsa-b8r1-8825Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:127435320-127435425+30,91779.60UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
lsa-b8r1-8911Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_6:141873441-141873622+27,09169.75UUGGACUGAAGGGAGCUCCCUmiR319MIRNAShortStack
lsa-b8r1-9260Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:2594569-2594649-1,0472.70CAUCUCUCCCUCAAAGACUUCUMIRNAShortStack
lsa-b8r1-9476Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:27085894-27085979-4,14210.66UGCAGAGGUUCGUUUUGGAUCMIRNAShortStack
lsa-b8r1-9477Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:27103924-27103988-31,31780.63UGCCGAGGUUCGUUUUGGAUCMIRNAShortStack
lsa-b8r1-9725Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:61641963-61642140+349,703900.34UUCCACGGCUUUCUUGAACUGmiR396MIRNAShortStack
lsa-b8r1-10171Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:150278015-150278255-4,40111.33GUACGAGACAUUAAUAUCAUCAGAMIRNAShortStack
lsa-b8r1-10358Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_7:177032907-177033139-1,1282.90CAUUAGCCCUUCAAUUUGCCUMIRNAShortStack
lsa-b8r1-11278Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_8:88819403-88819585+8,77322.59UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
lsa-b8r1-11914Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_8:191040554-191040630-1,6734.31UGGUGCCACGCUGUGUGCGUCmiR536MIRNAShortStack
lsa-b8r1-12305Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:3378689-3378842-43,888112.99UUAGAUUCACGCACAAACUCGmiR403MIRNAShortStack
lsa-b8r1-12340Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:9752615-9752776+10,43226.86UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
lsa-b8r1-12471Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:19714482-19714581-3,4208.81AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
lsa-b8r1-12593Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:31842279-31842520+74,552191.94UCGCCUCUAAAACUUAAGAAGAMIRNAShortStack
lsa-b8r1-12595Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:31857434-31857677+22,58558.15UCGCCUCUAAAACUUAAGAAGAMIRNAShortStack
lsa-b8r1-12772Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:50577782-50577889+5,62814.49AAUGGCUCUGAUACCAUGUUGGAUMIRNAShortStack
lsa-b8r1-13049Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:87894870-87894952+8,02220.65UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAShortStack
lsa-b8r1-13337Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:150708514-150708654+12,23431.50UCAUUGAGUGCAGCGUUGAUGmiR397MIRNAShortStack
lsa-b8r1-13607Lactuca sativa (Lettuce) 8Lsat_1_v8_lg_9:192076469-192076657+258,409665.29UCGGACCAGGCUUCAUUCCUUmiR166MIRNAShortStack