het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Citrullus lanatus (Watermelon) genome build 1 (clt-b1)

Version v1 of Citrullus lanatus subsp. vulgaris cv 97103 from The Cucurbit Genomics Database

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
clt-b1r1-228Citrullus lanatus (Watermelon) 1Chr0:3650525-3650548+3812.18CGAUCCCCGGCAACGGCGCCAmiR8175siRNA23ShortStack
clt-b1r1-4872Citrullus lanatus (Watermelon) 1Chr1:8734826-8734855-6,57137.66UCGAAUGAAUUCAAGGACAUAUUsiRNA23ShortStack
clt-b1r1-6712Citrullus lanatus (Watermelon) 1Chr1:21171464-21173825+10,712,07961,388.04UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
clt-b1r1-9541Citrullus lanatus (Watermelon) 1Chr1:32195999-32196025+3361.93UAACGAUAAUUAUGUUUCUGUAGsiRNA23ShortStack
clt-b1r1-17547Citrullus lanatus (Watermelon) 1Chr10:26301356-26302262.7,47342.83GUUAUUCUAUUCCACCUCUUAGAsiRNA23ShortStack
clt-b1r1-18196Citrullus lanatus (Watermelon) 1Chr10:28245964-28245989-6783.89UUUCUUAACUGCGUGAUCUUAAGsiRNA23ShortStack
clt-b1r1-19154Citrullus lanatus (Watermelon) 1Chr11:5644561-5645000+1,2377.09AGUGAGAGCAAGAUUUUGAAACUsiRNA23ShortStack
clt-b1r1-29490Citrullus lanatus (Watermelon) 1Chr2:13702140-13702537-5,14429.48AUUAUUAUUACUGAUCAAUAAUAsiRNA23ShortStack
clt-b1r1-31787Citrullus lanatus (Watermelon) 1Chr2:25613489-25613845+3121.79UGAUCUGGAAGCAUCAUAACAGGsiRNA23ShortStack
clt-b1r1-32555Citrullus lanatus (Watermelon) 1Chr2:27561422-27561800+1,90610.92GGGCUAUGAUGAUGUUUUGAACAsiRNA23ShortStack
clt-b1r1-43931Citrullus lanatus (Watermelon) 1Chr4:13684026-13684283.4972.85UGAGCAAAUGCCUGAACCAAAAUsiRNA23ShortStack
clt-b1r1-47643Citrullus lanatus (Watermelon) 1Chr5:638576-638611-1060.61CACGAGAACCUGAAGUUACACCCsiRNA23ShortStack
clt-b1r1-48070Citrullus lanatus (Watermelon) 1Chr5:2130807-2131399+15,07086.36GUUAUUCUAUUCCACCUCUUAGAsiRNA23ShortStack
clt-b1r1-60592Citrullus lanatus (Watermelon) 1Chr6:12278516-12278599-2,78315.95CUCUAAUCUUCUCUAUGAGGCCAsiRNA23ShortStack
clt-b1r1-62546Citrullus lanatus (Watermelon) 1Chr6:22786353-22786780+11,74267.29UGAGCCAAGAACGACUUGCCGGCmiR169siRNA23ShortStack
clt-b1r1-71592Citrullus lanatus (Watermelon) 1Chr8:368273-368829-11,71467.13UAUCUAUCCAAGGGAUGGAAGGGsiRNA23ShortStack
clt-b1r1-72712Citrullus lanatus (Watermelon) 1Chr8:8307602-8307760+31,213178.87GCGACCCCAGGUCAGGCGGGACUsiRNA23ShortStack
clt-b1r1-77801Citrullus lanatus (Watermelon) 1Chr9:1191808-1192222+95,707548.47UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack