het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Olea europaea (Olive Tree) genome build 6 (oeu-b6)

Version v6 of Olea europaea cv. Farga from The de novo Genome Assembly and Annotation Team

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
oeu-b6r1-760Olea europaea (Olive Tree) 6Oe6_s00013:553529-553610+1,06911.63GAGCCUUUGGGGAGAGGGACCMIRNAShortStack
oeu-b6r1-1636Olea europaea (Olive Tree) 6Oe6_s00033:683174-683269-1932.10CAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
oeu-b6r1-1831Olea europaea (Olive Tree) 6Oe6_s00042:334513-334624+1,66318.09UUCAAUAAAGCUGUGGGAAGmiR396MIRNAShortStack
oeu-b6r1-2218Olea europaea (Olive Tree) 6Oe6_s00052:472213-472399+467,6245,085.27UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
oeu-b6r1-2260Olea europaea (Olive Tree) 6Oe6_s00053:152284-152374-4,70751.19GUUCAAGAAAGCUGUGGGAGAmiR396MIRNAShortStack
oeu-b6r1-2467Olea europaea (Olive Tree) 6Oe6_s00059:476001-476108-39,276427.12UACGCAGGAGAGAUGACGCCCmiR391MIRNAShortStack
oeu-b6r1-3080Olea europaea (Olive Tree) 6Oe6_s00082:97671-97773+76,401830.84UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
oeu-b6r1-3421Olea europaea (Olive Tree) 6Oe6_s00096:362659-362730-3,39136.88AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
oeu-b6r1-3487Olea europaea (Olive Tree) 6Oe6_s00098:291953-292063+2,36425.71AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
oeu-b6r1-4432Olea europaea (Olive Tree) 6Oe6_s00147:294346-294517+3153.43AGGGGCGUGUAACCGGGCAUGMIRNAShortStack
oeu-b6r1-5201Olea europaea (Olive Tree) 6Oe6_s00191:75779-75907+1,03111.21AUGCACUGUGUUACUAAUCCACCAMIRNAShortStack
oeu-b6r1-6141Olea europaea (Olive Tree) 6Oe6_s00251:198431-198687+20,589223.90UUUCCUAUACCUCCCAUACCGAMIRNAShortStack
oeu-b6r1-6977Olea europaea (Olive Tree) 6Oe6_s00337:159712-159863-1,42315.48GCCAUGUAGGACGAUUACCGAUAGMIRNAShortStack
oeu-b6r1-7146Olea europaea (Olive Tree) 6Oe6_s00358:21290-21411+25,225274.31UCCUAAGCUCUGGAGGUGGUGCMIRNAShortStack
oeu-b6r1-7677Olea europaea (Olive Tree) 6Oe6_s00434:161160-161263-259,3542,820.40UCGGCGUCGUCAUUGCACCACMIRNAShortStack
oeu-b6r1-7742Olea europaea (Olive Tree) 6Oe6_s00448:22582-22655+1,14112.41UUCCACAGCUUUCUUGAACUGmiR396MIRNAShortStack
oeu-b6r1-8337Olea europaea (Olive Tree) 6Oe6_s00635:53748-53863-40,710442.71UUUCCUAUUCCUCCCAUACCGAMIRNAShortStack
oeu-b6r1-8893Olea europaea (Olive Tree) 6Oe6_s01923:1659011-1659095-4,32247.00UGAAGCUGCCAGCCUGAUCUUmiR167MIRNAShortStack
oeu-b6r1-8937Olea europaea (Olive Tree) 6Oe6_s01924:533516-533617+99010.77ACUUUUUGGUUGUUUGAUUGCAAGMIRNAShortStack
oeu-b6r1-9736Olea europaea (Olive Tree) 6Oe6_s01943:203782-203914-1,026,47311,162.59UCGGACCAGGCUUCAUUCCUCmiR166MIRNAShortStack
oeu-b6r1-10889Olea europaea (Olive Tree) 6Oe6_s01975:134296-134410+5576.06UGCAUUUACACCUGCACCUUCmiR530MIRNAShortStack
oeu-b6r1-12244Olea europaea (Olive Tree) 6Oe6_s02031:251039-251113+6,40869.69UCGGCGUCGUCAUUGCACCACMIRNAShortStack
oeu-b6r1-12325Olea europaea (Olive Tree) 6Oe6_s02037:219365-219476+122,1551,328.40AGAAUCCUGAUGAUGCUGCAUmiR172MIRNAShortStack
oeu-b6r1-12632Olea europaea (Olive Tree) 6Oe6_s02050:237439-237617+1,00310.91GCCACGUAAGGUGAUUGCGGUAGMIRNAShortStack
oeu-b6r1-15137Olea europaea (Olive Tree) 6Oe6_s02220:127014-127109+1,46315.91GCGUACAAGGAGCCAAGCAUAmiR160MIRNAShortStack
oeu-b6r1-15845Olea europaea (Olive Tree) 6Oe6_s02296:88616-88815+6386.94ACACCCUUCGGCACACCAAAUUAUMIRNAShortStack
oeu-b6r1-16355Olea europaea (Olive Tree) 6Oe6_s02370:135088-135177-14,425156.87AAGCAAGACCGAACAUGACCAMIRNAShortStack
oeu-b6r1-16958Olea europaea (Olive Tree) 6Oe6_s02514:42920-43071-3994.34AGGAGAGUGUAUACCGAACUGUAAMIRNAShortStack
oeu-b6r1-17688Olea europaea (Olive Tree) 6Oe6_s03846:507505-507572+3,07533.44CAGGGAUGGCUAUGGAGCAGGMIRNAShortStack
oeu-b6r1-18629Olea europaea (Olive Tree) 6Oe6_s03862:972555-972641-301,9643,283.77UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
oeu-b6r1-20093Olea europaea (Olive Tree) 6Oe6_s03915:344121-344209-8969.74UUCCAAAGGGAUCGCAUUGAUCmiR393MIRNAShortStack
oeu-b6r1-20224Olea europaea (Olive Tree) 6Oe6_s03923:176817-176908+143,9991,565.95UGAAGCUGCCAGCAUGAUCUUmiR167MIRNAShortStack
oeu-b6r1-20368Olea europaea (Olive Tree) 6Oe6_s03927:544256-544373+6567.13GAUGGAUGAAAUUGGUAUGGGUGAMIRNAShortStack
oeu-b6r1-21396Olea europaea (Olive Tree) 6Oe6_s03979:411620-411703-2,57227.97UCGCAGGAGAGAUGGCACUAAmiR3627MIRNAShortStack
oeu-b6r1-21531Olea europaea (Olive Tree) 6Oe6_s03986:399792-399887+32,507353.50UGGAGAAGCAGGGUACGUGGAmiR164MIRNAShortStack
oeu-b6r1-22905Olea europaea (Olive Tree) 6Oe6_s04076:132111-132183-4,26746.40UGAAGCUGCCAGCUUGAUCUAAmiR167MIRNAShortStack
oeu-b6r1-26307Olea europaea (Olive Tree) 6Oe6_s05770:475511-475653-138,8361,509.80UGGAAUGGAGUUCUGCGGAAGGMIRNAShortStack
oeu-b6r1-26597Olea europaea (Olive Tree) 6Oe6_s05774:710415-710489-2,84030.88UCGGCGUCGUCAUUGCACCACMIRNAShortStack
oeu-b6r1-26890Olea europaea (Olive Tree) 6Oe6_s05780:918254-918337-6757.34UUAGAUGAUCAUCAACAAACAmiR827MIRNAShortStack
oeu-b6r1-26979Olea europaea (Olive Tree) 6Oe6_s05783:102699-102924+6937.54CCGGUAGUCGUCCUAUGUGGCAUAMIRNAShortStack
oeu-b6r1-28388Olea europaea (Olive Tree) 6Oe6_s05822:18139-18226+3,29835.87UUCCACAGCUUUCUUGAACUGmiR396MIRNAShortStack
oeu-b6r1-28599Olea europaea (Olive Tree) 6Oe6_s05828:437478-437572-1,79619.53UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
oeu-b6r1-30123Olea europaea (Olive Tree) 6Oe6_s05898:317909-317991-177,2251,927.27UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
oeu-b6r1-33103Olea europaea (Olive Tree) 6Oe6_s06126:15646-15769+148,6921,616.98UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
oeu-b6r1-35829Olea europaea (Olive Tree) 6Oe6_s07709:873391-873485+4955.38UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
oeu-b6r1-35957Olea europaea (Olive Tree) 6Oe6_s07712:671693-671762+7878.56UCAUUGAGUGCAGCGUUGAUGmiR397MIRNAShortStack
oeu-b6r1-36630Olea europaea (Olive Tree) 6Oe6_s07732:771919-772000+115,2461,253.27CAGGGAUGGAUAUGGAGCAGGMIRNAShortStack
oeu-b6r1-38094Olea europaea (Olive Tree) 6Oe6_s07782:361330-361440-1,48416.14UGUCAUGAUUUGAAUAGUUCGGAGMIRNAShortStack
oeu-b6r1-42531Olea europaea (Olive Tree) 6Oe6_s08110:147097-147171+6,39469.53AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
oeu-b6r1-42735Olea europaea (Olive Tree) 6Oe6_s08140:41568-41661-34,519375.38UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
oeu-b6r1-42865Olea europaea (Olive Tree) 6Oe6_s08163:98265-98375-10,033109.11UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
oeu-b6r1-44036Olea europaea (Olive Tree) 6Oe6_s09609:490037-490097-5065.50GAGGUGUAAAGUGGGUUGGGUUGGMIRNAShortStack
oeu-b6r1-45732Olea europaea (Olive Tree) 6Oe6_s09647:501377-501479-85,247927.04UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
oeu-b6r1-49547Olea europaea (Olive Tree) 6Oe6_s09840:3989-4095-3,75640.85GAUGUGUCGAGGUGUCAAAAAUGUMIRNAShortStack
oeu-b6r1-49603Olea europaea (Olive Tree) 6Oe6_s09843:263920-264014+45,772497.76UCGGACCAGGCUUCGUUCCUCmiR166MIRNAShortStack
oeu-b6r1-51758Olea europaea (Olive Tree) 6Oe6_s10072:132695-132801-2,11923.04GAUGUGUCGAGGUGUCAAAAAUGUMIRNAShortStack