het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Fragaria x ananassa (Strawberry) genome build 1.0 (fan-b1.0)

Version v1.0 of Fragaria x ananassa cv. Reikou from The Genome Database for Rosaceae

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
fan-b1.0r1-247Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00001661_a:1056-1143+5,61537.03UCGGACCAGGCUUCGUUCCUCmiR166MIRNAShortStack
fan-b1.0r1-286Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00002009_a:63-125-2031.34ACAGGCGGUGGAACAAAUAUGAAUMIRNAShortStack
fan-b1.0r1-687Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00006107_a:450-554-2,52916.68AGGUGCAGGUGUAAGUGCAGAmiR530MIRNAShortStack
fan-b1.0r1-745Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00006800_a:128-221-7,49849.45AAUAGAAUGCUGGUAGAGGUCMIRNAShortStack
fan-b1.0r1-773Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00007169_a:889-987+5,71937.72AGGCAGUCACCUUGGCUAACmiR169MIRNAShortStack
fan-b1.0r1-888Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00008618_a:46-179+22,078145.61GCGUACGAGGAGCCAAGCAUAmiR160MIRNAShortStack
fan-b1.0r1-890Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00008654_a:422-623+304,0772,005.49UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
fan-b1.0r1-1467Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00017038_a:307-454-8,84558.34UGGGAUUGGGCGAAUUUUGGUmiR11288MIRNAShortStack
fan-b1.0r1-1552Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00018326_a:124-398+18,729123.52GGGUAUAGGUGGGUAGGAUAGmiR482MIRNAShortStack
fan-b1.0r1-1634Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00020000_a:144-243+1751.15AAGCCAAGGAUGAAUUGCCGGmiR169MIRNAShortStack
fan-b1.0r1-1635Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00020000_a:395-502+1,65210.90AAGCCAAGGAUGAAUUGCCGGmiR169MIRNAShortStack
fan-b1.0r1-1648Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00020180_a:83-246-42,080277.53AGGCUUUGUAGAGGAUGGAAUmiR11283MIRNAShortStack
fan-b1.0r1-1674Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00020529_a:1-94+6764.46AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
fan-b1.0r1-1676Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00020588_a:393-681-200,5511,322.70UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
fan-b1.0r1-1827Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00023234_a:187-356-195,7411,290.98UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
fan-b1.0r1-1863Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00023750_a:270-358-1,63310.77UUUUUGAUGGCUGGAAUCCAGUmiR11296MIRNAShortStack
fan-b1.0r1-2226Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00031211_a:151-270-8005.28GAUUUUAAUGGAGUCGGUAAGMIRNAShortStack
fan-b1.0r1-2387Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00034918_a:203-326-284,0101,873.14UUGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
fan-b1.0r1-2424Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00035620_a:1-275+1,81611.98UCAAAUAAUUCAACCACCUUAMIRNAShortStack
fan-b1.0r1-2478Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00036800_a:265-378-1,63910.81UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
fan-b1.0r1-2583Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00039012_a:158-327+237,1441,564.05UGAAUUGGGAUUUGGCGAAUUmiR11288MIRNAShortStack
fan-b1.0r1-2612Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00039592_a:107-302-36,555241.09AACCGGCUCUGAUACCAAUUGmiR845MIRNAShortStack
fan-b1.0r1-3075Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00050909_a:1-259+200,7251,323.85UUGGAGAGAGAGUAGACAAUGmiR11286MIRNAShortStack
fan-b1.0r1-3248Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00056675_a:37-240-270,1811,781.94UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
fan-b1.0r1-3298Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00058414_a:1-206+16,858111.18UGUAGAGCCAAUGGCUGAUCCMIRNAShortStack
fan-b1.0r1-3557Fragaria x ananassa (Strawberry) 1.0FANhyb_icon00065694_a:34-137-3352.21AAGCCAAGGAUGAAUUGCCGGmiR169MIRNAShortStack
fan-b1.0r1-3874Fragaria x ananassa (Strawberry) 1.0FANhyb_icon15288523_s:1-153-20,904137.87UUCGUUCGGAUUCCAAUUCAAAmiR11288MIRNAShortStack
fan-b1.0r1-4126Fragaria x ananassa (Strawberry) 1.0FANhyb_icon16677347_s:1-132-7,11246.91CGGUAUAGUCUUUCCUGAGCUCUUMIRNAShortStack
fan-b1.0r1-4141Fragaria x ananassa (Strawberry) 1.0FANhyb_icon16787739_o:1-191-1,836,20712,110.42UUUGAAGUGGGAUUUGGCGAAmiR11288MIRNAShortStack
fan-b1.0r1-4786Fragaria x ananassa (Strawberry) 1.0FANhyb_icon19713819_s:1-156-75,262496.38UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
fan-b1.0r1-4858Fragaria x ananassa (Strawberry) 1.0FANhyb_icon20006129_s:1-285+2,05813.57AGAUUUAUCAAGAUUGUCAAGMIRNAShortStack
fan-b1.0r1-4874Fragaria x ananassa (Strawberry) 1.0FANhyb_icon20041815_s:1-98+17,076112.62AAGUUUGGCUUCGAAUCUGGAMIRNAShortStack
fan-b1.0r1-5228Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000003:86051-86177+2,41915.95GGAGCAUCUUCAAGAUUCACAmiR172MIRNAShortStack
fan-b1.0r1-5415Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000011:113786-113904+10,03666.19UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
fan-b1.0r1-5487Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000014:148000-148115-87,963580.15UGACAGAAGAGAGUGAGCUCmiR156MIRNAShortStack
fan-b1.0r1-5649Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000024:90850-91101+91,224601.65UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
fan-b1.0r1-6043Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000053:77574-77638-7414.89CGAACUUAUUGCAACUAGCUUmiR7125MIRNAShortStack
fan-b1.0r1-6110Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000060:88410-88537+8,51756.17UCGACGGUGGAGACGACGGGUMIRNAShortStack
fan-b1.0r1-6519Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000095:87615-87847-15,277100.76UAUUGGCAGACUUGAAGCAUUMIRNAShortStack
fan-b1.0r1-8150Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000290:27973-28064-1,0606.99CUGAAGUGUUUGGGGGAACUCmiR395MIRNAShortStack
fan-b1.0r1-8152Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000290:30026-30149+7,60850.18CUGAAGUGUUUGGGGGAACUCmiR395MIRNAShortStack
fan-b1.0r1-8155Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000290:40211-40303+3,08420.34CUGAAGUGUUUGGGGGAACUCmiR395MIRNAShortStack
fan-b1.0r1-8682Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000376:21511-21614+27,098178.72UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
fan-b1.0r1-9176Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000465:55691-55843-2,30515.20UGAGCCAAGAAUGACUUGCUGmiR169MIRNAShortStack
fan-b1.0r1-9593Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000549:43160-43295-40,792269.04UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
fan-b1.0r1-9970Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000636:21326-21403-2681.77AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
fan-b1.0r1-10318Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000737:18780-18928+3,849,12825,386.33UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
fan-b1.0r1-10571Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00000800:33771-33961+26,025171.64AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
fan-b1.0r1-11461Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001069:18762-18841+2761.82AUUAAAGUUCGACCAAAAAACMIRNAShortStack
fan-b1.0r1-11651Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001148:2659-2886+1,1827.80AUCAUGCUAUCCCUUUGGAUUmiR393MIRNAShortStack
fan-b1.0r1-11976Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001268:3180-3351+20,715136.62UGCGAGUGUCUUCACCUCUGAAmiR2109MIRNAShortStack
fan-b1.0r1-11977Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001268:4674-4810+1,4219.37UGCGUGUGUCCUCGCCUCUGAAMIRNAShortStack
fan-b1.0r1-12185Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001374:5589-5741+5053.33UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
fan-b1.0r1-12552Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001598:1123-1204+4,68530.90ACAAGUCGUCCUUGGUUCACCmiR169MIRNAShortStack
fan-b1.0r1-12605Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001630:11368-11453+373,9462,466.30UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
fan-b1.0r1-12621Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001639:4904-5008+6334.18GGGUAGGACCUCCAUUGGCAGUMIRNAShortStack
fan-b1.0r1-12622Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001639:8509-8660-1290.85UGCCAAAGGAGAAUUGCCCUGmiR399MIRNAShortStack
fan-b1.0r1-12699Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001690:551-634+1,61510.65UUGAGCCGCGUCAAUAUCUCCmiR171MIRNAShortStack
fan-b1.0r1-12823Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00001767:1342-1444-20,137132.81UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
fan-b1.0r1-13568Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00002415:494-578+3,98426.28AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
fan-b1.0r1-13658Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00002486:586-758-200,8371,324.59UGAAGCUGCCAGCAUGAUCUCAmiR167MIRNAShortStack
fan-b1.0r1-14259Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00003187:2705-2754-1681.11UGAAAGUGGCCAAAAUUCAUCCMIRNAShortStack
fan-b1.0r1-14347Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00003282:4026-4166+12,14280.08UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
fan-b1.0r1-14748Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00003785:524-650-3,02119.93UUAGAUGACCAUCAACAAACAmiR827MIRNAShortStack
fan-b1.0r1-14761Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00003796:2425-2514-4382.89ACUUGAGACUUGGGAGAUACUMIRNAShortStack
fan-b1.0r1-15203Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00004370:3924-4123+23,225153.18CUAGUCAUUGGUCAUAGCAUCmiR11315MIRNAShortStack
fan-b1.0r1-16146Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00005629:901-978-2,25614.88UCAAAAUCAGUGUUGUAGAUUMIRNAShortStack
fan-b1.0r1-16889Fragaria x ananassa (Strawberry) 1.0FANhyb_rscf00006892:389-566+185,4441,223.07UUGGACUGAAGGGAGCUCCCmiR319MIRNAShortStack