Data from Lunardon et al. (2020)

Genome and annotations summary

Fragaria x ananassa (Strawberry) genome build 1.0 (fan-b1.0)

Version v1.0 of Fragaria x ananassa cv. Reikou from The Genome Database for Rosaceae

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Download genome assembly FASTA file

BLAST search

Small RNA Loci

Click links below to show sub-sets of annotations

	ShortStack
MIRNA	68
nearMIRNA	29
siRNA20	15
siRNA21	1,425
siRNA22	372
siRNA23	18
siRNA24	12,463
OtherRNA	2,831
NotExpressed	0

Small RNA-seq data

Reference Set

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
strawberry_all_reference_set	100,386,750	51,235,339	none	1	mixed	mixed	wt	refset1	1	merge of 11 libraries - reference set 1

Invidiual alignments (11)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
SRR1649251	4,892,057	1,786,252	SRA	0	receptacle	Toyonoka	wt	A	1	receptacle (fruit treated with water 14 days after athesis) -- control conditions
SRR1649252	5,241,760	2,362,097	SRA	0	receptacle	Toyonoka	wt	B	1	receptacle (fruit treated with water 19 days after athesis) -- control conditions
SRR1649253	6,550,486	2,199,245	SRA	0	receptacle	Toyonoka	wt	C	1	receptacle (fruit treated with water 22 days after athesis) -- control conditions
SRR1649254	4,503,133	3,629,016	SRA	0	receptacle	Toyonoka	wt	D	1	receptacle (19 days after athesis) -- collected 5 days later after treatment with ABA at 14 days after athesis
SRR1649255	6,051,980	3,459,741	SRA	0	receptacle	Toyonoka	wt	E	1	receptacle (22 days after athesis) -- collected 8 days later after treatment with ABA at 14 days after athesis
SRR1649256	5,640,915	2,217,459	SRA	0	receptacle	Toyonoka	wt	F	1	receptacle (19 days after athesis) -- collected 5 days later after treatment with ABA biosynthesis blocker nordihydroguaiaretic acid at 14 days after athesis
SRR1649257	4,969,491	2,343,251	SRA	0	receptacle	Toyonoka	wt	G	1	receptacle (22 days after athesis) -- collected 8 days later after treatment with ABA biosynthesis blocker nordihydroguaiaretic acid at 14 days after athesis
SRR3680868	19,536,456	13,923,115	SRA	0	leaf	unknown	wt	H	1	leaf
SRR393996	12,545,327	9,927,514	SRA	0	fruit	Sweet Charlie	wt	I	1	fruit (mix of young green fruitlets -- big green fruits -- white fruits -- pink fruits and mature red fruits) -- control conditions
SRR907583	14,670,937	4,492,009	SRA	0	fruit	Zhangji	wt	J	1	fruit (at commercial maturity) -- control conditions
SRR907584	15,784,208	4,895,640	SRA	0	fruit	Zhangji	wt	K	1	fruit (at commercial maturity stored at 20 C for 24 h) -- control conditions