het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Prunus persica (Peach) genome build 2.0 (ppe-b2.0)

Version v2.0 of Prunus persica cv. Lovell from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ppe-b2.0r1-1399Prunus persica (Peach) 2.0Pp01:5686707-5686893-2,18224.80UGAGUCAGGAAUGAGUAGCCAGCsiRNA20ShortStack
ppe-b2.0r1-9029Prunus persica (Peach) 2.0Pp01:47461958-47462059-9,461107.52GCGGGUAUAGUUUAGUGGUAsiRNA20ShortStack
ppe-b2.0r1-10208Prunus persica (Peach) 2.0Pp02:6224878-6224947+1,21813.84ACCUGGCUCUGAUACCAUAUmiR5139siRNA20ShortStack
ppe-b2.0r1-11400Prunus persica (Peach) 2.0Pp02:16145793-16146056+2,826,40032,121.52GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
ppe-b2.0r1-11408Prunus persica (Peach) 2.0Pp02:16153111-16153441-68,056773.44GCGGAUAUAGUCGAAUGGUAsiRNA20ShortStack
ppe-b2.0r1-12249Prunus persica (Peach) 2.0Pp02:20140919-20140947.921.05AACUGGUCUAACUCACAUAUsiRNA20ShortStack
ppe-b2.0r1-15364Prunus persica (Peach) 2.0Pp03:4932994-4933062.1721.96AGUAAAUCACUCACCUACAAsiRNA20ShortStack
ppe-b2.0r1-16247Prunus persica (Peach) 2.0Pp03:9235584-9235707+1721.96ACGGAACCCUCUAAUACAUGsiRNA20ShortStack
ppe-b2.0r1-16617Prunus persica (Peach) 2.0Pp03:13679129-13679187.1091.24CGAGCUGACUUGGUGUCAUUsiRNA20ShortStack
ppe-b2.0r1-16815Prunus persica (Peach) 2.0Pp03:15052802-15052856-10,685121.43UGGGGCGUGGCCAAGUGGUAsiRNA20ShortStack
ppe-b2.0r1-17970Prunus persica (Peach) 2.0Pp03:20963937-20963995+881.00ACUACGGAUGGGACACUGCUsiRNA20ShortStack
ppe-b2.0r1-18164Prunus persica (Peach) 2.0Pp03:21891509-21891583-1,42316.17GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack
ppe-b2.0r1-19163Prunus persica (Peach) 2.0Pp03:26850065-26850288+4425.02UGACAGAAGAUAGAGAGCACmiR156siRNA20ShortStack
ppe-b2.0r1-23335Prunus persica (Peach) 2.0Pp04:22447429-22447477.981.11AUAGUAAUCAGUCACAAGAAsiRNA20ShortStack
ppe-b2.0r1-24768Prunus persica (Peach) 2.0Pp05:5311245-5311268.280.32CAAACAAUCCUAUAUAGAAGsiRNA20ShortStack
ppe-b2.0r1-25098Prunus persica (Peach) 2.0Pp05:7871725-7871744+280.32AGCCCAUUUUUAUUAAGCCCsiRNA20ShortStack
ppe-b2.0r1-33782Prunus persica (Peach) 2.0Pp07:7906766-7906785.520.59CUACUGCCAGAAUACAUGAUsiRNA20ShortStack
ppe-b2.0r1-34297Prunus persica (Peach) 2.0Pp07:10639201-10639220+1011.15GAGUCAAUAUCCACAAGUCAsiRNA20ShortStack
ppe-b2.0r1-35452Prunus persica (Peach) 2.0Pp07:15595080-15595266+2212.51GGGACUUGUAUAUGGGCGUCsiRNA20ShortStack
ppe-b2.0r1-36491Prunus persica (Peach) 2.0Pp07:21693889-21693972+2,04723.26UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
ppe-b2.0r1-37822Prunus persica (Peach) 2.0Pp08:6721658-6721797.3744.25GGGUCCAUAGCUCAGUGGUAsiRNA20ShortStack