het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Prunus persica (Peach) genome build 2.0 (ppe-b2.0)

Version v2.0 of Prunus persica cv. Lovell from Phytozome

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ppe-b2.0r1-372Prunus persica (Peach) 2.0Pp01:1563690-1563762+40,942465.30UGAAGCUGCCAGCAUGAUCUUAmiR167MIRNAShortStack
ppe-b2.0r1-534Prunus persica (Peach) 2.0Pp01:2253916-2254019+145,0311,648.25UUAUACAAUGAAAUCACGGCCGmiR7122MIRNAShortStack
ppe-b2.0r1-1401Prunus persica (Peach) 2.0Pp01:5689973-5690156+7,13081.03UGAGCCAAGAAUGACUUGCUGmiR169MIRNAShortStack
ppe-b2.0r1-5517Prunus persica (Peach) 2.0Pp01:30618570-30618727+19,205218.26CUACCGAUUCCACCCAUUCCGAMIRNAShortStack
ppe-b2.0r1-5518Prunus persica (Peach) 2.0Pp01:30619956-30620110+13,714155.86UUUCCGAAACCUCCCAUUCCAAmiR482MIRNAShortStack
ppe-b2.0r1-5519Prunus persica (Peach) 2.0Pp01:30620702-30620809+2,73331.06UUGCCUAUUCCUCCCAUGCCAAmiR482MIRNAShortStack
ppe-b2.0r1-5522Prunus persica (Peach) 2.0Pp01:30625380-30625659+16,663189.37UCUUUCCUACUCCACCCAUUCCmiR482MIRNAShortStack
ppe-b2.0r1-6037Prunus persica (Peach) 2.0Pp01:33174529-33174596+1,01411.52UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
ppe-b2.0r1-6406Prunus persica (Peach) 2.0Pp01:34960228-34960315+431,4754,903.64UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
ppe-b2.0r1-6575Prunus persica (Peach) 2.0Pp01:35792904-35792991-11,252127.88UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
ppe-b2.0r1-8161Prunus persica (Peach) 2.0Pp01:43095244-43095334-1611.83UGCCAAAGAAGAGUUGCCCUAmiR399MIRNAShortStack
ppe-b2.0r1-13268Prunus persica (Peach) 2.0Pp02:24261199-24261309+14,058159.77AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
ppe-b2.0r1-13333Prunus persica (Peach) 2.0Pp02:24579546-24579630-8,33394.70GCGUAUGAGGAGCCAUGCAUAmiR160MIRNAShortStack
ppe-b2.0r1-13629Prunus persica (Peach) 2.0Pp02:25860610-25860699+1,41416.07GGAAUCUUGAUGAUGCUGCAGmiR172MIRNAShortStack
ppe-b2.0r1-14357Prunus persica (Peach) 2.0Pp03:244880-244983+112,1711,274.80ACAGGGAACAGGUAGAGCAUGmiR408MIRNAShortStack
ppe-b2.0r1-17016Prunus persica (Peach) 2.0Pp03:16316440-16316660+59,461675.76GGAAUGGGCUGUUUGGGAUGmiR482MIRNAShortStack
ppe-b2.0r1-17024Prunus persica (Peach) 2.0Pp03:16336273-16336358+697,8657,931.11CUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
ppe-b2.0r1-18152Prunus persica (Peach) 2.0Pp03:21868100-21868187+4,19047.62UUGAGCCGCGUCAAUAUCUCCmiR171MIRNAShortStack
ppe-b2.0r1-18919Prunus persica (Peach) 2.0Pp03:25329240-25329309-5,65564.27UCGCAGGAGAGAUGGCACUGUCmiR3627MIRNAShortStack
ppe-b2.0r1-20154Prunus persica (Peach) 2.0Pp04:5325319-5325406+21,099239.79GCGUACGAGGAGCCAAGCAUAmiR160MIRNAShortStack
ppe-b2.0r1-23194Prunus persica (Peach) 2.0Pp04:20111554-20111722+1,69419.25GGAGCGACCUGGGAUCACAUGmiR398MIRNAShortStack
ppe-b2.0r1-25989Prunus persica (Peach) 2.0Pp05:11887518-11887772+3,23236.73ACUCUCCCUCAAAGGCUUCUAGmiR477MIRNAShortStack
ppe-b2.0r1-26155Prunus persica (Peach) 2.0Pp05:12576324-12576549+42,874487.26UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
ppe-b2.0r1-26932Prunus persica (Peach) 2.0Pp05:16880500-16880584-6,78577.11UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
ppe-b2.0r1-27021Prunus persica (Peach) 2.0Pp05:17557055-17557263+141,9391,613.11UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAShortStack
ppe-b2.0r1-27823Prunus persica (Peach) 2.0Pp06:3479638-3479722-2,79031.71AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
ppe-b2.0r1-28840Prunus persica (Peach) 2.0Pp06:7627715-7627821-8,68698.72AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
ppe-b2.0r1-29541Prunus persica (Peach) 2.0Pp06:11086056-11086143+7578.60GUUUUUGAAUGGAAGGCCCAUGUGmiR8016MIRNAShortStack
ppe-b2.0r1-32533Prunus persica (Peach) 2.0Pp06:28252775-28252880+51,275582.73ACAGGCGGUGGAUCAAAUAUGAAUMIRNAShortStack
ppe-b2.0r1-32717Prunus persica (Peach) 2.0Pp06:29520834-29520906+71,793815.91UGAAGCUGCCAGCAUGAUCUGmiR167MIRNAShortStack
ppe-b2.0r1-35315Prunus persica (Peach) 2.0Pp07:14976880-14976975-3263.71AGGUGCAAGUGUAAGUGCAGAmiR530MIRNAShortStack
ppe-b2.0r1-36022Prunus persica (Peach) 2.0Pp07:18519876-18520133-164,6631,871.37UGAAGGAAGAUUUGUGGAAAGmiR8122MIRNAShortStack
ppe-b2.0r1-36412Prunus persica (Peach) 2.0Pp07:21072693-21072807+33,626382.15UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
ppe-b2.0r1-36413Prunus persica (Peach) 2.0Pp07:21077557-21077781-145,1081,649.13UUCCACAGCUUUCUUGAACUGmiR396MIRNAShortStack
ppe-b2.0r1-36536Prunus persica (Peach) 2.0Pp07:22179302-22179484-6,39072.62UUAGAUGACCAUCAACAAACAmiR827MIRNAShortStack
ppe-b2.0r1-40019Prunus persica (Peach) 2.0Pp08:18430333-18430417+385,7374,383.83UGACGACGAGAGAGAGCACGCmiR535MIRNAShortStack
ppe-b2.0r1-40391Prunus persica (Peach) 2.0Pp08:20544988-20545080+507,5095,767.75UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
ppe-b2.0r1-40435Prunus persica (Peach) 2.0Pp08:20761727-20761831-3343.80UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack