het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Theobroma cacao (Cacao) genome build 1.1 (tcc-b1.1)

Version v1.1 of Theobroma cacao cv. Matina 1-6 from Cacao Genome Database

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
tcc-b1.1r1-12546Theobroma cacao (Cacao) 1.1cacao1chloroplast:101849-104054-10,1864,811.04AGUUACUAAUUCAUGAUCUGGCsiRNA22ShortStack
tcc-b1.1r1-12574Theobroma cacao (Cacao) 1.1cacao1chloroplast:147023-149670+10,5684,991.47AGUUACUAAUUCAUGAUCUGGCAUsiRNA22ShortStack
tcc-b1.1r1-886Theobroma cacao (Cacao) 1.1scaffold_1:785824-785880.73.31UAGGAUCUCGUCUCAAAUCGAUUsiRNA22ShortStack
tcc-b1.1r1-988Theobroma cacao (Cacao) 1.1scaffold_1:2872161-2872224+52.36AAUGAGGCUCACGAUUUUAUGAAGsiRNA22ShortStack
tcc-b1.1r1-1237Theobroma cacao (Cacao) 1.1scaffold_1:6738801-6738886.52.36CAACCAAACGUACUAUUAUAGAAUsiRNA22ShortStack
tcc-b1.1r1-1366Theobroma cacao (Cacao) 1.1scaffold_1:8694660-8694843+94.25UGGCAAGCCCAACUCUAUAAAAsiRNA22ShortStack
tcc-b1.1r1-1389Theobroma cacao (Cacao) 1.1scaffold_1:9087658-9087741-52.36ACUAAACAGUGGGCUGCAUUGAUsiRNA22ShortStack
tcc-b1.1r1-1413Theobroma cacao (Cacao) 1.1scaffold_1:9558475-9558549+104.72AUUGAUUGAUUGAUUGUUGUAGsiRNA22ShortStack
tcc-b1.1r1-1444Theobroma cacao (Cacao) 1.1scaffold_1:10064511-10064702+62.83UUACAUGCUCUUGAUUUAAACGGUsiRNA22ShortStack
tcc-b1.1r1-1452Theobroma cacao (Cacao) 1.1scaffold_1:10270579-10270780+62.83CUUUGAUACUGUCGUAACUUGCsiRNA22ShortStack
tcc-b1.1r1-1492Theobroma cacao (Cacao) 1.1scaffold_1:10695927-10696123.52.36GUGGACGUAUCUUCUGAACGCsiRNA22ShortStack
tcc-b1.1r1-1568Theobroma cacao (Cacao) 1.1scaffold_1:11899559-11899593-52.36AAACUUAGGUCUGGUAGUsiRNA22ShortStack
tcc-b1.1r1-1596Theobroma cacao (Cacao) 1.1scaffold_1:12248288-12248421.52.36ACGAUAGCUUGACGACUCCACUAGsiRNA22ShortStack
tcc-b1.1r1-1697Theobroma cacao (Cacao) 1.1scaffold_1:13806772-13806873.52.36AUGGCUUGAGCAUGUGACACGUsiRNA22ShortStack
tcc-b1.1r1-1703Theobroma cacao (Cacao) 1.1scaffold_1:13885012-13885227+9946.76CAACGGCGGACCCGUAGGUGGUsiRNA22ShortStack
tcc-b1.1r1-1704Theobroma cacao (Cacao) 1.1scaffold_1:13885533-13885647+7937.31UUACGUGGGUCCUUUCGAGUUCsiRNA22ShortStack
tcc-b1.1r1-1705Theobroma cacao (Cacao) 1.1scaffold_1:13895607-13895795+52.36UUACGUGACUUGUUUAUAGAUUsiRNA22ShortStack
tcc-b1.1r1-1723Theobroma cacao (Cacao) 1.1scaffold_1:14367574-14367700.83.78AUCUAGAUAGUAGAAGAUUsiRNA22ShortStack
tcc-b1.1r1-1864Theobroma cacao (Cacao) 1.1scaffold_1:17863050-17863258.73.31CGUGUCGUGUCGUAUAUUAACAsiRNA22ShortStack
tcc-b1.1r1-1883Theobroma cacao (Cacao) 1.1scaffold_1:19279272-19279374.52.36AUACGUGUACAUAGACAAAAGACUsiRNA22ShortStack
tcc-b1.1r1-1972Theobroma cacao (Cacao) 1.1scaffold_1:26140452-26140621.104.72UUAUGAUCCGAACUGAUAAAUUsiRNA22ShortStack
tcc-b1.1r1-1977Theobroma cacao (Cacao) 1.1scaffold_1:26325356-26325513+52.36AGACUUAGUGAUCAUCGGCUCUGUsiRNA22ShortStack
tcc-b1.1r1-2099Theobroma cacao (Cacao) 1.1scaffold_1:30510856-30510966-52.36AAAAUUUCUCGACUUAAUCUAGGUsiRNA22ShortStack
tcc-b1.1r1-2168Theobroma cacao (Cacao) 1.1scaffold_1:31457136-31457277.62.83AGCCACAGACAUUUGACCAAsiRNA22ShortStack
tcc-b1.1r1-2294Theobroma cacao (Cacao) 1.1scaffold_1:33414677-33414826.62.83UAAACUGGUCUACGUUUUUCGUsiRNA22ShortStack
tcc-b1.1r1-2332Theobroma cacao (Cacao) 1.1scaffold_1:34030942-34031072+73.31UUUGUAUAUGACGUGUAACAUCsiRNA22ShortStack
tcc-b1.1r1-2347Theobroma cacao (Cacao) 1.1scaffold_1:34421644-34421726+62.83UCGUGGCAAGAUUGAAAAUCUCsiRNA22ShortStack
tcc-b1.1r1-2501Theobroma cacao (Cacao) 1.1scaffold_1:37010890-37010997+146.61AUGGUGCUGAUAUUACGUAUUAsiRNA22ShortStack
tcc-b1.1r1-2597Theobroma cacao (Cacao) 1.1scaffold_1:38461477-38461533+52.36AACCGUGGGAUCUGAUCGAGAAGCsiRNA22ShortStack
tcc-b1.1r1-304Theobroma cacao (Cacao) 1.1scaffold_10r:4767809-4767862-52.36CAAUUUGAUCUAGGCUUGACAsiRNA22ShortStack
tcc-b1.1r1-473Theobroma cacao (Cacao) 1.1scaffold_10r:12535965-12536084+52.36AUGAGUGACUGCAAAUAAACUUUUsiRNA22ShortStack
tcc-b1.1r1-729Theobroma cacao (Cacao) 1.1scaffold_10r:23313172-23313259.73.31ACGAUUUUGAGUAGAGAAACUAsiRNA22ShortStack
tcc-b1.1r1-730Theobroma cacao (Cacao) 1.1scaffold_10r:23313374-23313568+2813.23UCUUGCUUGAAUUUCUUUUCUsiRNA22ShortStack
tcc-b1.1r1-774Theobroma cacao (Cacao) 1.1scaffold_10r:24256960-24257066-62.83CAACGGCGGACCCGUAGGUGGUsiRNA22ShortStack
tcc-b1.1r1-815Theobroma cacao (Cacao) 1.1scaffold_10r:24655751-24655910-52.36AUAAACGUCGACGAUAUUUUGUsiRNA22ShortStack
tcc-b1.1r1-12421Theobroma cacao (Cacao) 1.1scaffold_112:5339-5394.73.31GAUCGGUGUAAGAGAGUGUCAUsiRNA22ShortStack
tcc-b1.1r1-2743Theobroma cacao (Cacao) 1.1scaffold_2:2569068-2569134-73.31CGUGGUGUGGAUAUGACAUAsiRNA22ShortStack
tcc-b1.1r1-2947Theobroma cacao (Cacao) 1.1scaffold_2:6330725-6330871.83.78CAUACUCAGACUGAGCUACACUsiRNA22ShortStack
tcc-b1.1r1-3079Theobroma cacao (Cacao) 1.1scaffold_2:8836663-8836760.52.36UGAUUUCACUACUCGUAUCGGAUUsiRNA22ShortStack
tcc-b1.1r1-3116Theobroma cacao (Cacao) 1.1scaffold_2:9575695-9575829-52.36AGACUUGAUCUAGACUUGACCUsiRNA22ShortStack
tcc-b1.1r1-3203Theobroma cacao (Cacao) 1.1scaffold_2:11213116-11213272.52.36AGAAGUAGACGCGAUAUUGUUGsiRNA22ShortStack
tcc-b1.1r1-3291Theobroma cacao (Cacao) 1.1scaffold_2:13251555-13251643.62.83CGGCUCUCUCUCUUUCCCUAAGAsiRNA22ShortStack
tcc-b1.1r1-3379Theobroma cacao (Cacao) 1.1scaffold_2:18294067-18294143.52.36AUGGUUACGCCCGGGGAAGGAUUsiRNA22ShortStack
tcc-b1.1r1-3416Theobroma cacao (Cacao) 1.1scaffold_2:22796144-22796488+6,6143,123.92UUGCCGAGUCCGCCCAUGCCUAsiRNA22ShortStack
tcc-b1.1r1-3685Theobroma cacao (Cacao) 1.1scaffold_2:34600876-34601087.62.83AACCAAUUACAAGAAGACUGUUsiRNA22ShortStack
tcc-b1.1r1-3710Theobroma cacao (Cacao) 1.1scaffold_2:35397134-35397283-52.36ACGAAUCCGGAUUAGAUACACUsiRNA22ShortStack
tcc-b1.1r1-3755Theobroma cacao (Cacao) 1.1scaffold_2:36167539-36167600.62.83CAAAUACUCGGAUACAGAUGGUsiRNA22ShortStack
tcc-b1.1r1-3835Theobroma cacao (Cacao) 1.1scaffold_2:37751117-37751172-52.36AAGCUCUUCUGUGAUAUUUGUsiRNA22ShortStack
tcc-b1.1r1-3882Theobroma cacao (Cacao) 1.1scaffold_2:38812108-38812265+73.31AUAGAUCUCGAUGGCAUUAGAGsiRNA22ShortStack
tcc-b1.1r1-3926Theobroma cacao (Cacao) 1.1scaffold_2:39701032-39701254-62.83AACGGUCUUUCAUGGAGUUGAAsiRNA22ShortStack
tcc-b1.1r1-3952Theobroma cacao (Cacao) 1.1scaffold_2:40194808-40194834.52.36AUGCUCAAAUAGGUCUAUAAACUsiRNA22ShortStack
tcc-b1.1r1-4131Theobroma cacao (Cacao) 1.1scaffold_3:780440-780475-62.83GGAUUUGAGUGAAUGAGAUUGUGAsiRNA22ShortStack
tcc-b1.1r1-4174Theobroma cacao (Cacao) 1.1scaffold_3:1545968-1546058-52.36AGGCGAGUUAGGUUGGAUACUGUGsiRNA22ShortStack
tcc-b1.1r1-4236Theobroma cacao (Cacao) 1.1scaffold_3:2595466-2595614.115.20GAUCUGUCGUUCGGAAGAGAGAsiRNA22ShortStack
tcc-b1.1r1-4307Theobroma cacao (Cacao) 1.1scaffold_3:5636272-5636395+52.36AGACAAGGGAGCUGACGAUUGUGUsiRNA22ShortStack
tcc-b1.1r1-4367Theobroma cacao (Cacao) 1.1scaffold_3:7439095-7439233-52.36UUAUGUUAUUUGUUUGGAUCUUsiRNA22ShortStack
tcc-b1.1r1-4377Theobroma cacao (Cacao) 1.1scaffold_3:7971073-7971187-52.36CCCUGGAAGAACUCGUCUCUACsiRNA22ShortStack
tcc-b1.1r1-4506Theobroma cacao (Cacao) 1.1scaffold_3:18242452-18242641+52.36CGGAUCUGGUGAAAUUUGAGCAsiRNA22ShortStack
tcc-b1.1r1-4709Theobroma cacao (Cacao) 1.1scaffold_3:22924610-22924802-52.36CUUGUGAUCUCGAUUAAGUGGAsiRNA22ShortStack
tcc-b1.1r1-4743Theobroma cacao (Cacao) 1.1scaffold_3:23534563-23534687-52.36GAUAGCCGGAUUUGAAUCUUAsiRNA22ShortStack
tcc-b1.1r1-4822Theobroma cacao (Cacao) 1.1scaffold_3:25172913-25172970-83.78UUUACUAAACUCUUACCCCCAGsiRNA22ShortStack
tcc-b1.1r1-4882Theobroma cacao (Cacao) 1.1scaffold_3:26352781-26352937.52.36GAUCUUGUGAAUGCGsiRNA22ShortStack
tcc-b1.1r1-4885Theobroma cacao (Cacao) 1.1scaffold_3:26391871-26391952.52.36UUCGAUUUUUACAGCAACUACAsiRNA22ShortStack
tcc-b1.1r1-4931Theobroma cacao (Cacao) 1.1scaffold_3:27351026-27351216.73.31AACGACUAAAUUAACUCUAUUUsiRNA22ShortStack
tcc-b1.1r1-4984Theobroma cacao (Cacao) 1.1scaffold_3:28444254-28444362-52.36UAACCGUUUGCACAUCUCUAUUsiRNA22ShortStack
tcc-b1.1r1-5095Theobroma cacao (Cacao) 1.1scaffold_3:30620295-30620489-198.97AACGAUUUGGAGACUUCACUUCsiRNA22ShortStack
tcc-b1.1r1-5283Theobroma cacao (Cacao) 1.1scaffold_4:523792-523913.62.83GAUUCAUGGCUCUUCUCUGGACCAsiRNA22ShortStack
tcc-b1.1r1-5301Theobroma cacao (Cacao) 1.1scaffold_4:825351-825435.62.83AGUGCCGACGUGACAUGCUAACsiRNA22ShortStack
tcc-b1.1r1-5304Theobroma cacao (Cacao) 1.1scaffold_4:865268-865519.83.78AUACAAAAUAUUGUCGACGUUUsiRNA22ShortStack
tcc-b1.1r1-5459Theobroma cacao (Cacao) 1.1scaffold_4:4072484-4072589+52.36UUCCGUGUAAUUUUGAUCAAAACUsiRNA22ShortStack
tcc-b1.1r1-5602Theobroma cacao (Cacao) 1.1scaffold_4:14122538-14122568-52.36AGAGAAUAGAAGGAUUCGGACUsiRNA22ShortStack
tcc-b1.1r1-5603Theobroma cacao (Cacao) 1.1scaffold_4:14224013-14224168.62.83ACUAACAUCGUGAUUUUUCCUACUsiRNA22ShortStack
tcc-b1.1r1-5611Theobroma cacao (Cacao) 1.1scaffold_4:14749472-14749622+3918.42CUGGCUGAGAAGCUCGCGACUGsiRNA22ShortStack
tcc-b1.1r1-5619Theobroma cacao (Cacao) 1.1scaffold_4:15451118-15451170+52.36AUUCCAUUCAUCAUACCAAACUsiRNA22ShortStack
tcc-b1.1r1-5632Theobroma cacao (Cacao) 1.1scaffold_4:15801033-15801148+62.83CUGUGAGCGUUUUGAGCAUUsiRNA22ShortStack
tcc-b1.1r1-5646Theobroma cacao (Cacao) 1.1scaffold_4:16454849-16454943+73.31UGAAGAAUUCAGGUAACUCCAGsiRNA22ShortStack
tcc-b1.1r1-5663Theobroma cacao (Cacao) 1.1scaffold_4:16875969-16876124+73.31AAUGACUGUUCCGAUsiRNA22ShortStack
tcc-b1.1r1-5667Theobroma cacao (Cacao) 1.1scaffold_4:16941456-16941604.52.36CUGUUUUAUCUAAAUCGUAUUUsiRNA22ShortStack
tcc-b1.1r1-5719Theobroma cacao (Cacao) 1.1scaffold_4:17497018-17497095.73.31CUUGGGAUGUUUCAGAGAGUUUsiRNA22ShortStack
tcc-b1.1r1-5766Theobroma cacao (Cacao) 1.1scaffold_4:18850326-18850436-52.36GUACAGCUUCUUCUCUUGUAUUUsiRNA22ShortStack
tcc-b1.1r1-5834Theobroma cacao (Cacao) 1.1scaffold_4:20703210-20703337+62.83AAGAUCUACAACCAACCAUAGCsiRNA22ShortStack
tcc-b1.1r1-5888Theobroma cacao (Cacao) 1.1scaffold_4:21753113-21753235.104.72ACGAUUUUCUCAUUCUUGUAGAsiRNA22ShortStack
tcc-b1.1r1-5952Theobroma cacao (Cacao) 1.1scaffold_4:22646364-22646483.94.25UGUGUGAUCUCGUUAUUGAUGGsiRNA22ShortStack
tcc-b1.1r1-6018Theobroma cacao (Cacao) 1.1scaffold_4:24062322-24062343+52.36AUACUUCAAAUGUGGAAUCCAGsiRNA22ShortStack
tcc-b1.1r1-6075Theobroma cacao (Cacao) 1.1scaffold_4:25161596-25161708.62.83CUGGGCAUAUAAGAAUUCACACAsiRNA22ShortStack
tcc-b1.1r1-6298Theobroma cacao (Cacao) 1.1scaffold_4:29348653-29348761-52.36AAGGAGAGAGAUCUGCUGGGGGsiRNA22ShortStack
tcc-b1.1r1-6440Theobroma cacao (Cacao) 1.1scaffold_4:32043958-32044148-52.36GCCCUUAAUCUUUAUUUUGUAGsiRNA22ShortStack
tcc-b1.1r1-12376Theobroma cacao (Cacao) 1.1scaffold_46:26900-26926.52.36AUGAAGACAGACUGUAAUUsiRNA22ShortStack
tcc-b1.1r1-6688Theobroma cacao (Cacao) 1.1scaffold_5:2832143-2832300.52.36UCAGAUGAGACGAAAUCCACAAGUsiRNA22ShortStack
tcc-b1.1r1-6778Theobroma cacao (Cacao) 1.1scaffold_5:4570089-4570207.73.31AAACAUCCUUCUGAACCUGUUGGsiRNA22ShortStack
tcc-b1.1r1-6849Theobroma cacao (Cacao) 1.1scaffold_5:6135593-6135648.62.83CUGUCUCUUUGUUACUCUCAAUAGsiRNA22ShortStack
tcc-b1.1r1-6873Theobroma cacao (Cacao) 1.1scaffold_5:6783000-6783040+62.83CUAGAUGUUUAGGAUGAUGUUUsiRNA22ShortStack
tcc-b1.1r1-6927Theobroma cacao (Cacao) 1.1scaffold_5:9456264-9456294+62.83ACUGAAUACGAUAUGAACAAUUsiRNA22ShortStack
tcc-b1.1r1-6972Theobroma cacao (Cacao) 1.1scaffold_5:12203459-12203574+52.36AAGGGAAUUGCAUCCGAGGACUsiRNA22ShortStack
tcc-b1.1r1-6993Theobroma cacao (Cacao) 1.1scaffold_5:13491238-13491355+62.83AAAACGGUAUUGGCUUAAUUCAsiRNA22ShortStack
tcc-b1.1r1-7012Theobroma cacao (Cacao) 1.1scaffold_5:14064114-14064231+52.36CUUUUUCUGAGCGUAUAUAGUCsiRNA22ShortStack
tcc-b1.1r1-7076Theobroma cacao (Cacao) 1.1scaffold_5:19201086-19201189-52.36UCACGAUUUUGUUGUUUCUGGGsiRNA22ShortStack
tcc-b1.1r1-7112Theobroma cacao (Cacao) 1.1scaffold_5:22008406-22008488-52.36GUCAAUUGGACUGUUUUCUUUGUGsiRNA22ShortStack
tcc-b1.1r1-7116Theobroma cacao (Cacao) 1.1scaffold_5:22164210-22164336.73.31GCCUUUGAGAAUUGAUUGUGAAUUsiRNA22ShortStack
tcc-b1.1r1-7152Theobroma cacao (Cacao) 1.1scaffold_5:24557045-24557126-52.36GAAAGACGAACGUUGUAGUUGAsiRNA22ShortStack
tcc-b1.1r1-7159Theobroma cacao (Cacao) 1.1scaffold_5:24674330-24674408-52.36CGAUGCUGUGACUUGAUAUGUUsiRNA22ShortStack
tcc-b1.1r1-7175Theobroma cacao (Cacao) 1.1scaffold_5:24873910-24874000.62.83CUGGUGGGAUCCGAGAUGUUCUsiRNA22ShortStack
tcc-b1.1r1-7183Theobroma cacao (Cacao) 1.1scaffold_5:25222933-25223060.73.31GACACGUCAUGUGAACACGAUUAsiRNA22ShortStack
tcc-b1.1r1-7256Theobroma cacao (Cacao) 1.1scaffold_5:27380545-27380670+52.36UUUGUCUUAGAAUUUCUAAUCUAsiRNA22ShortStack
tcc-b1.1r1-7358Theobroma cacao (Cacao) 1.1scaffold_5:29595320-29595430-8942.04UGUUUUGUGGAGGAAGAACUUGsiRNA22ShortStack
tcc-b1.1r1-7359Theobroma cacao (Cacao) 1.1scaffold_5:29595950-29596016-73.31CAACAGUCCCUUCACCCAAGACsiRNA22ShortStack
tcc-b1.1r1-7527Theobroma cacao (Cacao) 1.1scaffold_5:32417950-32418068.62.83ACCGUAAACUCAUCAAACUsiRNA22ShortStack
tcc-b1.1r1-7534Theobroma cacao (Cacao) 1.1scaffold_5:32630136-32630336.52.36AUACGAAAGUUAGACGUUGGCUUsiRNA22ShortStack
tcc-b1.1r1-7561Theobroma cacao (Cacao) 1.1scaffold_5:33208740-33208947.52.36AAUUGCUGAAGAGUCUGAUUGAUGsiRNA22ShortStack
tcc-b1.1r1-7578Theobroma cacao (Cacao) 1.1scaffold_5:33701624-33701758.52.36CACGGUAUUGCUUGAACAGCUGsiRNA22ShortStack
tcc-b1.1r1-7587Theobroma cacao (Cacao) 1.1scaffold_5:33960776-33961131.94.25CUAAUAGUGAUGGACUUAGAUUsiRNA22ShortStack
tcc-b1.1r1-7593Theobroma cacao (Cacao) 1.1scaffold_5:34013987-34014091.73.31CAUGACGUGUAACAACCUAACUsiRNA22ShortStack
tcc-b1.1r1-7691Theobroma cacao (Cacao) 1.1scaffold_5:35434397-35434592.73.31AGAGAUCUUAUUGAAGUGUGUGsiRNA22ShortStack
tcc-b1.1r1-7850Theobroma cacao (Cacao) 1.1scaffold_5:38777943-38777966+115.20GAUACUGAGAAUAUCUGUGCAGsiRNA22ShortStack
tcc-b1.1r1-12386Theobroma cacao (Cacao) 1.1scaffold_51:44016-44117+209.45CUUGGAAAUGGAUACAUCAUGUsiRNA22ShortStack
tcc-b1.1r1-8089Theobroma cacao (Cacao) 1.1scaffold_6:2507670-2507796-52.36AGAGACCUGAAGCUCCGAUUCGUsiRNA22ShortStack
tcc-b1.1r1-8194Theobroma cacao (Cacao) 1.1scaffold_6:4461238-4461327+52.36AUAUGACAUGACUAACCUGAUUsiRNA22ShortStack
tcc-b1.1r1-8307Theobroma cacao (Cacao) 1.1scaffold_6:8817856-8817956+52.36UUUCCUGAACUUCAAAUUGUACsiRNA22ShortStack
tcc-b1.1r1-8331Theobroma cacao (Cacao) 1.1scaffold_6:9895534-9895591.73.31UCUCCAGGUCUGAAUCAGUsiRNA22ShortStack
tcc-b1.1r1-8333Theobroma cacao (Cacao) 1.1scaffold_6:10092264-10092414.62.83UGUCACCACCGAAAUCUGCAUGsiRNA22ShortStack
tcc-b1.1r1-8388Theobroma cacao (Cacao) 1.1scaffold_6:13726432-13726532-52.36CACGUGAAUGUGUAACUCGGCAsiRNA22ShortStack
tcc-b1.1r1-8528Theobroma cacao (Cacao) 1.1scaffold_6:19043299-19043415.52.36UUAGAUCGAGCAAUUAGGUUUCUsiRNA22ShortStack
tcc-b1.1r1-8690Theobroma cacao (Cacao) 1.1scaffold_6:21861306-21861486.115.20ACAACGAGCUUUUUAGGUACAAAAsiRNA22ShortStack
tcc-b1.1r1-8771Theobroma cacao (Cacao) 1.1scaffold_6:23244500-23244641+52.36CUGUAGAACAAGGCACGCCAGAsiRNA22ShortStack
tcc-b1.1r1-8841Theobroma cacao (Cacao) 1.1scaffold_6:24532023-24532133-52.36AUGUAAACUGUGACAsiRNA22ShortStack
tcc-b1.1r1-8879Theobroma cacao (Cacao) 1.1scaffold_6:25047813-25047893+73.31UCAGAUGUGGGACUCAAGUCUAsiRNA22ShortStack
tcc-b1.1r1-8924Theobroma cacao (Cacao) 1.1scaffold_6:25847759-25847860.52.36UCGAUCUUUUGAUGACUUACGUCAsiRNA22ShortStack
tcc-b1.1r1-8946Theobroma cacao (Cacao) 1.1scaffold_6:26277555-26277702.73.31GUGGGACUUUAUGGCACUAUUUsiRNA22ShortStack
tcc-b1.1r1-9033Theobroma cacao (Cacao) 1.1scaffold_7:324026-324124.73.31AAUCAAGAGAUUACAAGAACAGUUsiRNA22ShortStack
tcc-b1.1r1-9097Theobroma cacao (Cacao) 1.1scaffold_7:1346065-1346255.52.36GAAAUCAACUCUAACAUAAUCAAUsiRNA22ShortStack
tcc-b1.1r1-9157Theobroma cacao (Cacao) 1.1scaffold_7:2743047-2743094.62.83UGUUGUAUUGUCAUAGUUUGGGUAsiRNA22ShortStack
tcc-b1.1r1-9239Theobroma cacao (Cacao) 1.1scaffold_7:4213622-4213825.52.36AACUAGCUGUAAACACCUUAUUsiRNA22ShortStack
tcc-b1.1r1-9279Theobroma cacao (Cacao) 1.1scaffold_7:4784432-4784612.62.83AAUGGUUGCUUCUGAUAUACUUsiRNA22ShortStack
tcc-b1.1r1-9356Theobroma cacao (Cacao) 1.1scaffold_7:5990695-5991073+188.50CACCCUAUCUAAGACCAUGUUsiRNA22ShortStack
tcc-b1.1r1-9371Theobroma cacao (Cacao) 1.1scaffold_7:6136870-6136968.104.72GUCUAAUCGUUAAUGAACUGUUsiRNA22ShortStack
tcc-b1.1r1-9400Theobroma cacao (Cacao) 1.1scaffold_7:6463798-6463941.73.31CCGAAAUAACUGAAUACUGAACAsiRNA22ShortStack
tcc-b1.1r1-9411Theobroma cacao (Cacao) 1.1scaffold_7:6654120-6654311-52.36CUCGAUUUAGAUUUAUCUAUCUsiRNA22ShortStack
tcc-b1.1r1-9519Theobroma cacao (Cacao) 1.1scaffold_7:9255343-9255467-125.67GAGAGUUCCGGGUUGUGACAUUsiRNA22ShortStack
tcc-b1.1r1-9522Theobroma cacao (Cacao) 1.1scaffold_7:9334267-9334497.94.25CUAGAAAUAACUCUGAUGCACUsiRNA22ShortStack
tcc-b1.1r1-9526Theobroma cacao (Cacao) 1.1scaffold_7:9377632-9377685+10147.70AAAUCAGGACCAACAAGUUGGCsiRNA22ShortStack
tcc-b1.1r1-9616Theobroma cacao (Cacao) 1.1scaffold_7:11200854-11201086+62.83CUUUAUUUGUUUAACUAUCUCAGUsiRNA22ShortStack
tcc-b1.1r1-9793Theobroma cacao (Cacao) 1.1scaffold_7:20175316-20175444-13965.65UGAAAAUGAACUGAAUGUUACGsiRNA22ShortStack
tcc-b1.1r1-9895Theobroma cacao (Cacao) 1.1scaffold_7:23522201-23522237.73.31AACAGUCUUCGUGUACUCUAUUsiRNA22ShortStack
tcc-b1.1r1-9913Theobroma cacao (Cacao) 1.1scaffold_7:23848825-23848885-52.36GCGAUUUAUGAUUCGGACUGAUsiRNA22ShortStack
tcc-b1.1r1-9956Theobroma cacao (Cacao) 1.1scaffold_8:583947-583999+52.36AAACGACUGUCAAUCUCACUAUUsiRNA22ShortStack
tcc-b1.1r1-10020Theobroma cacao (Cacao) 1.1scaffold_8:1815217-1815422.125.67AAUAUGUGAUAUGUUAUAGUUAGGsiRNA22ShortStack
tcc-b1.1r1-10039Theobroma cacao (Cacao) 1.1scaffold_8:2216666-2216720-52.36AAAAAAGAACAUUGGUAAGAACsiRNA22ShortStack
tcc-b1.1r1-10095Theobroma cacao (Cacao) 1.1scaffold_8:3195776-3195821+73.31AGUUGCUGAUUUACUCUUCCAAGsiRNA22ShortStack
tcc-b1.1r1-10132Theobroma cacao (Cacao) 1.1scaffold_8:4315652-4315726+52.36CAUUGUCACGAGGUGGUUCGACAsiRNA22ShortStack
tcc-b1.1r1-10206Theobroma cacao (Cacao) 1.1scaffold_8:5542428-5542533+52.36CUGUUUUUGGACUCGUCAGCCAUUsiRNA22ShortStack
tcc-b1.1r1-10218Theobroma cacao (Cacao) 1.1scaffold_8:5783727-5783854+52.36GAUUUUUCGGGGCUCUCCsiRNA22ShortStack
tcc-b1.1r1-10245Theobroma cacao (Cacao) 1.1scaffold_8:6574691-6574747-62.83GUGAUUGCAUUGAUUUUGAACUGUsiRNA22ShortStack
tcc-b1.1r1-10365Theobroma cacao (Cacao) 1.1scaffold_8:9577968-9578073.52.36UUCGUGUUUAAUCGUGUCUGACsiRNA22ShortStack
tcc-b1.1r1-10607Theobroma cacao (Cacao) 1.1scaffold_8:18245238-18245395.73.31AAUAUGAAAAGACUAAAAAAsiRNA22ShortStack
tcc-b1.1r1-10615Theobroma cacao (Cacao) 1.1scaffold_8:18445206-18445396-104.72AUAAACGUCGACGAUAUUUUGUsiRNA22ShortStack
tcc-b1.1r1-10617Theobroma cacao (Cacao) 1.1scaffold_8:18466634-18466716+52.36AUCUUCCUGAACUUAUUCUAUGsiRNA22ShortStack
tcc-b1.1r1-10620Theobroma cacao (Cacao) 1.1scaffold_8:18495761-18495844.52.36UAUGCGAAGAAUUUGCGAACAUCCsiRNA22ShortStack
tcc-b1.1r1-10737Theobroma cacao (Cacao) 1.1scaffold_9:257805-257923+52.36UGGCUACAUUGGUUUCUCUUCmiR169siRNA22ShortStack
tcc-b1.1r1-10815Theobroma cacao (Cacao) 1.1scaffold_9:2030715-2030738+157.09GAUCUUGACUGUGAAUAAAAAGsiRNA22ShortStack
tcc-b1.1r1-11089Theobroma cacao (Cacao) 1.1scaffold_9:7176707-7176951.83.78UUGCUUAGUGGCUCAAAsiRNA22ShortStack
tcc-b1.1r1-11101Theobroma cacao (Cacao) 1.1scaffold_9:7320514-7320651+52.36UCGAGAGUGGAGUUACGGGsiRNA22ShortStack
tcc-b1.1r1-11134Theobroma cacao (Cacao) 1.1scaffold_9:7819369-7819393.52.36ACCGUUGUGAGACAGGCCGAGCsiRNA22ShortStack
tcc-b1.1r1-11332Theobroma cacao (Cacao) 1.1scaffold_9:13846410-13846593.62.83AUGGUGGAUCUUGAGGUUCUUAsiRNA22ShortStack
tcc-b1.1r1-11446Theobroma cacao (Cacao) 1.1scaffold_9:18762909-18763047+62.83GGUGAGUUGUUCUUGGCUAUsiRNA22ShortStack
tcc-b1.1r1-11456Theobroma cacao (Cacao) 1.1scaffold_9:19173728-19173825-52.36UAACGACUAGAUCUAUAUGUUUsiRNA22ShortStack
tcc-b1.1r1-11529Theobroma cacao (Cacao) 1.1scaffold_9:22667841-22667888+52.36AUAACUGUGUGCUAUGUAUAUUsiRNA22ShortStack
tcc-b1.1r1-11664Theobroma cacao (Cacao) 1.1scaffold_9:30053676-30053725.62.83AGAAAUCUCUGAUCAACGAUAsiRNA22ShortStack
tcc-b1.1r1-11776Theobroma cacao (Cacao) 1.1scaffold_9:32869672-32869888+62.83UCUGGGUUGAGGAGAAGUUCUUGCsiRNA22ShortStack
tcc-b1.1r1-11787Theobroma cacao (Cacao) 1.1scaffold_9:32990403-32990565.73.31AGUUCGCGGACCCGCACGUUsiRNA22ShortStack
tcc-b1.1r1-11947Theobroma cacao (Cacao) 1.1scaffold_9:35848775-35848948.62.83AACAAAGAACGGAAAAGAAGACUAsiRNA22ShortStack
tcc-b1.1r1-11962Theobroma cacao (Cacao) 1.1scaffold_9:36136814-36136991+52.36AGUGCGUGGCUGUUUGAAAAAUUCsiRNA22ShortStack
tcc-b1.1r1-11980Theobroma cacao (Cacao) 1.1scaffold_9:36364306-36364412.52.36CUUUUAUCGAGGACGUUCUCCCsiRNA22ShortStack
tcc-b1.1r1-12094Theobroma cacao (Cacao) 1.1scaffold_9:38581497-38581563+52.36UCUGUUUUAUGUGAGACUUAUGACsiRNA22ShortStack
tcc-b1.1r1-12169Theobroma cacao (Cacao) 1.1scaffold_9:39932185-39932313+52.36CUAGAUCUGGCUGUGGAGUGCUsiRNA22ShortStack
tcc-b1.1r1-12216Theobroma cacao (Cacao) 1.1scaffold_9:40881733-40881864-136.14UUUCUUGACUUGAGGAAUUUAGsiRNA22ShortStack