| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| gba-b1.0r1-494 | Gossypium barbadense (Pima Cotton) 1.0 | At03:7893249-7893365 | + | 958 | 2.10 | UGCUGAAGAGUGAGAGCGCAU | | MIRNA | ShortStack |
| gba-b1.0r1-1439 | Gossypium barbadense (Pima Cotton) 1.0 | At06:96254299-96254387 | - | 12,444 | 27.32 | AAGGGAGAGCUAGAUUCAUAA | | MIRNA | ShortStack |
| gba-b1.0r1-1440 | Gossypium barbadense (Pima Cotton) 1.0 | At06:96264978-96265065 | - | 17,469 | 38.35 | AAGGGAAAGACUAGAUUCAUA | | MIRNA | ShortStack |
| gba-b1.0r1-1887 | Gossypium barbadense (Pima Cotton) 1.0 | At08:82928921-82928996 | + | 4,338 | 9.52 | ACUCUCUUCCAAAGGCUUUGAG | | MIRNA | ShortStack |
| gba-b1.0r1-1904 | Gossypium barbadense (Pima Cotton) 1.0 | At08:90520857-90521002 | - | 20,220 | 44.39 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | ShortStack |
| gba-b1.0r1-3272 | Gossypium barbadense (Pima Cotton) 1.0 | At13:1411016-1411106 | - | 22,546 | 49.50 | GAUUUGGGGCAAAGACGGGAU | | MIRNA | ShortStack |
| gba-b1.0r1-3414 | Gossypium barbadense (Pima Cotton) 1.0 | At13:81574251-81574376 | - | 28,719 | 63.05 | UGACAGAAGAGAGUGAGCACU | miR156 | MIRNA | ShortStack |
| gba-b1.0r1-3605 | Gossypium barbadense (Pima Cotton) 1.0 | C30219726:919-1183 | + | 1,101 | 2.42 | UAUGGGGGGUAUGGGCAGGUU | | MIRNA | ShortStack |
| gba-b1.0r1-6886 | Gossypium barbadense (Pima Cotton) 1.0 | Dt10:4929286-4929366 | - | 1,773 | 3.89 | CAUGUGCCUUGGCUCUCCAUC | miR164 | MIRNA | ShortStack |
| gba-b1.0r1-10433 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10718:91066-91178 | - | 37,113 | 81.47 | UUACUUUAGAUGUCUCCUUCA | miR7495 | MIRNA | ShortStack |
| gba-b1.0r1-10440 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10718:150087-150301 | - | 64,494 | 141.58 | CAAGAAAAGAAGUCGGGAGAG | miR7508 | MIRNA | ShortStack |
| gba-b1.0r1-10445 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold10718:202171-202412 | - | 15,673 | 34.41 | UUUGUACUUUAGAUGUCUCUC | | MIRNA | ShortStack |
| gba-b1.0r1-11670 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11037:17023-17104 | - | 15,338 | 33.67 | AAUCAGCCAGGAAUCGUUUGA | miR7513 | MIRNA | ShortStack |
| gba-b1.0r1-11671 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11037:24765-24846 | - | 15,270 | 33.52 | AAUCAGCCAGGAAUCGUUUGA | miR7513 | MIRNA | ShortStack |
| gba-b1.0r1-11748 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11062:137323-137435 | + | 21,087 | 46.29 | ACUCUCCCUCAAGGGCUUCCCC | miR477 | MIRNA | ShortStack |
| gba-b1.0r1-12547 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11389:31328-31412 | + | 1,861 | 4.09 | UUGUGAUAUUAUUGAAGAACA | | MIRNA | ShortStack |
| gba-b1.0r1-12762 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11413:48388-48501 | - | 144,102 | 316.35 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | ShortStack |
| gba-b1.0r1-14262 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold11954:36198-36276 | - | 1,677 | 3.68 | CAUGUGCCUUGGCUCUCCAUC | miR164 | MIRNA | ShortStack |
| gba-b1.0r1-15721 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12508:12437-12533 | + | 1,029 | 2.26 | GCAUCAGAGGACUCAGGCAGG | | MIRNA | ShortStack |
| gba-b1.0r1-16563 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold12856:42936-43198 | - | 666,674 | 1,463.55 | UCUCGGACCAGGCUUCAUUCC | miR166 | MIRNA | ShortStack |
| gba-b1.0r1-17242 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13095:174787-174883 | + | 81,361 | 178.61 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| gba-b1.0r1-18935 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold13859:109911-110022 | - | 1,297 | 2.85 | AUCAUGCGAUCCCUUCGGAAU | miR393 | MIRNA | ShortStack |
| gba-b1.0r1-19344 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14007:190511-190588 | + | 4,320 | 9.48 | ACUCUCUUCCAAAGGCUUUGAG | | MIRNA | ShortStack |
| gba-b1.0r1-19345 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14007:192582-192662 | + | 7,967 | 17.49 | ACUCUCUUCCAAAGGCUUCAAG | miR477 | MIRNA | ShortStack |
| gba-b1.0r1-19866 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14244:8133-8220 | + | 28,490 | 62.54 | UGACAGAAGAGAGUGAGCACU | miR156 | MIRNA | ShortStack |
| gba-b1.0r1-19932 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold14276:141317-141394 | + | 4,278 | 9.39 | ACUCUCUUCCAAAGGCUUUGAG | | MIRNA | ShortStack |
| gba-b1.0r1-20747 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1458:195702-195789 | - | 12,618 | 27.70 | AAGGGAGAGCUAGAUUCAUAA | | MIRNA | ShortStack |
| gba-b1.0r1-20748 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1458:206375-206467 | - | 17,226 | 37.82 | AAGGGAAAGACUAGAUUCAUA | | MIRNA | ShortStack |
| gba-b1.0r1-22640 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold15460:176090-176178 | + | 67,032 | 147.16 | UGACAAUGAGAGAGAGCACGC | miR535 | MIRNA | ShortStack |
| gba-b1.0r1-22971 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold15606:263647-263727 | + | 10,622 | 23.32 | GUUCCCUCCGGCACUUCAGUU | | MIRNA | ShortStack |
| gba-b1.0r1-23928 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold16091:25893-26065 | - | 5,541 | 12.16 | UUCCCAAAACCUCCAAUUCCAA | miR482 | MIRNA | ShortStack |
| gba-b1.0r1-24334 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold16361:53106-53186 | - | 1,898 | 4.17 | CAUGUGCCUUGGCUCUCCAUC | miR164 | MIRNA | ShortStack |
| gba-b1.0r1-24700 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1662:362093-362238 | - | 20,303 | 44.57 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | ShortStack |
| gba-b1.0r1-24877 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold16798:91212-91281 | + | 1,864 | 4.09 | UCAUUGAGUGCAGCGUUGAUG | miR397 | MIRNA | ShortStack |
| gba-b1.0r1-25743 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17255:281792-281893 | + | 48,890 | 107.33 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| gba-b1.0r1-26174 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold17432:162122-162210 | + | 70,629 | 155.05 | UGACAAUGAGAGAGAGCACGC | miR535 | MIRNA | ShortStack |
| gba-b1.0r1-27851 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold1828:25414-25502 | + | 240,807 | 528.64 | UUGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| gba-b1.0r1-28108 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold18404:19318-19466 | + | 370,006 | 812.27 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | ShortStack |
| gba-b1.0r1-28416 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold18592:26866-26946 | + | 602 | 1.32 | GUCAUGCUAAAUUUUGAAUGAAAG | | MIRNA | ShortStack |
| gba-b1.0r1-29940 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold196:989657-989814 | + | 2,441 | 5.36 | AGCACACGGUGCUAUGGUCGCUAA | | MIRNA | ShortStack |
| gba-b1.0r1-30635 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold20156:46914-47198 | + | 142,008 | 311.75 | UCUUACCAACCCCUCCCAUACC | miR2948 | MIRNA | ShortStack |
| gba-b1.0r1-31422 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold20608:25613-25722 | + | 7,390 | 16.22 | UCGCUUCCCUAAUUUGGACGA | miR8753 | MIRNA | ShortStack |
| gba-b1.0r1-35081 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold239:241858-241968 | + | 294,239 | 645.94 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | ShortStack |
| gba-b1.0r1-35920 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold24661:3229-3309 | + | 56,858 | 124.82 | UCGGACCAGGCUUCAUUUCCC | miR166 | MIRNA | ShortStack |
| gba-b1.0r1-35921 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold24661:9747-9827 | + | 56,890 | 124.89 | UCGGACCAGGCUUCAUUUCCC | miR166 | MIRNA | ShortStack |
| gba-b1.0r1-36253 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold25034:29870-29963 | + | 969 | 2.13 | UGCUGAAGAGUGAGAGCGCAU | | MIRNA | ShortStack |
| gba-b1.0r1-36573 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold2550:268018-268131 | - | 121,548 | 266.83 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | ShortStack |
| gba-b1.0r1-37156 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold26169:161665-161754 | - | 22,341 | 49.05 | GAUUUGGGGCAAAGACGGGAU | | MIRNA | ShortStack |
| gba-b1.0r1-38049 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold27259:8053-8142 | - | 732,144 | 1,607.27 | UUGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| gba-b1.0r1-39810 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold29752:53287-53374 | - | 28,594 | 62.77 | UGACAGAAGAGAGUGAGCACU | miR156 | MIRNA | ShortStack |
| gba-b1.0r1-41872 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3262:181700-181878 | - | 4,502 | 9.88 | UUGGUAUGGAGGAUGGAAAAG | miR8634 | MIRNA | ShortStack |
| gba-b1.0r1-42263 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold32982:29449-29575 | - | 2,321 | 5.10 | UGCAUUUGCACCUGCACCUUA | miR530 | MIRNA | ShortStack |
| gba-b1.0r1-42505 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3324:36273-36342 | + | 2,542 | 5.58 | UCAUUGAGUGCAGCGUUGAUG | miR397 | MIRNA | ShortStack |
| gba-b1.0r1-42553 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3335:148617-148699 | - | 828 | 1.82 | UUGAGCCGCGCCAAUAUCACU | miR171 | MIRNA | ShortStack |
| gba-b1.0r1-44385 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3628:219864-219971 | + | 1,463 | 3.21 | UCCAGAAGCAGAGUUAGGACA | | MIRNA | ShortStack |
| gba-b1.0r1-44583 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold36673:4823-4935 | + | 2,818 | 6.19 | ACUCUCCUUCAAAGGCUUCAU | | MIRNA | ShortStack |
| gba-b1.0r1-44973 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold3777:20298-20456 | + | 15,502 | 34.03 | UCUUUCCUACUCCUCCCAUUCC | miR482 | MIRNA | ShortStack |
| gba-b1.0r1-50013 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4672:168823-168911 | - | 290,863 | 638.53 | UGACAACGAGAGAGAGCACGU | miR535 | MIRNA | ShortStack |
| gba-b1.0r1-50045 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold4682:18807-18886 | + | 4,572 | 10.04 | AAUCUCCCUCAAACGCUUCCAG | | MIRNA | ShortStack |
| gba-b1.0r1-52282 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5119:34805-34893 | + | 437 | 0.96 | AGUGCCGUCGUCUUGUGACAAG | | MIRNA | ShortStack |
| gba-b1.0r1-52499 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5173:406477-406569 | + | 10,216 | 22.43 | UGAUUGAGCCGUGCCAAUAUC | miR171 | MIRNA | ShortStack |
| gba-b1.0r1-53569 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5369:135157-135386 | + | 5,089 | 11.17 | CAGCCAAGGAUGACUUGCCGG | miR169 | MIRNA | ShortStack |
| gba-b1.0r1-55072 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold5776:138336-138424 | - | 398,785 | 875.45 | UUGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| gba-b1.0r1-56834 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold6321:132815-132991 | + | 7,517,867 | 16,503.95 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| gba-b1.0r1-60977 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7440:120169-120444 | + | 36,432 | 79.98 | AUGUCACUCUCUCAUGCUGUU | | MIRNA | ShortStack |
| gba-b1.0r1-60978 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7440:126438-126535 | + | 37,469 | 82.26 | AAGAAAAGAAGUCGGGAGAAG | | MIRNA | ShortStack |
| gba-b1.0r1-61149 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7456:22045-22141 | - | 17,453 | 38.32 | UCGGACUGGAUUUGUUGACAA | miR3476 | MIRNA | ShortStack |
| gba-b1.0r1-61166 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7456:106878-106963 | + | 12,792 | 28.08 | ACUUUUGAACUGGAUUUGCCGA | miR2949 | MIRNA | ShortStack |
| gba-b1.0r1-61167 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7456:108422-108508 | + | 26,273 | 57.68 | ACUUUUGAACUGGAUUUGCCGA | miR2949 | MIRNA | ShortStack |
| gba-b1.0r1-61169 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7456:162483-162567 | + | 12,963 | 28.46 | ACUUUUGAACUGGAUUUGCCGA | miR2949 | MIRNA | ShortStack |
| gba-b1.0r1-62020 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold7706:147135-147250 | - | 235,399 | 516.77 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | ShortStack |
| gba-b1.0r1-66280 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9021:146219-146302 | - | 544,788 | 1,195.97 | UGAAGCUGCCAGCAUGAUCUU | miR167 | MIRNA | ShortStack |
| gba-b1.0r1-67199 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9344:164427-164607 | - | 35,244 | 77.37 | UUCCCGGAGGCCACCCAUUCCAG | | MIRNA | ShortStack |
| gba-b1.0r1-68183 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9598:199897-199986 | + | 19,028 | 41.77 | UUGUCGCAGGAGAGAUGGCACU | miR3627 | MIRNA | ShortStack |
| gba-b1.0r1-68193 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9598:344630-344741 | + | 15,197 | 33.36 | UCUGUCGCAGGGGAGAUGGCUG | miR3267 | MIRNA | ShortStack |
| gba-b1.0r1-68815 | Gossypium barbadense (Pima Cotton) 1.0 | scaffold9789:9291-9419 | - | 3,875 | 8.51 | UCGGACCAGGCUUCAUUCCUC | miR166 | MIRNA | ShortStack |
Data from Lunardon et al. (2020)