het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Cicer arietinum (Chickpea) genome build 2.0 (car-b2.0)

Version 2.0 of Cicer arietinum cv. ICC4958 from The Cool Season Food Legume Crop Database

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
car-b2.0r1-470Cicer arietinum (Chickpea) 2.0Ca_LG_1:4690430-4690513-11,94566.09AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
car-b2.0r1-545Cicer arietinum (Chickpea) 2.0Ca_LG_1:5206039-5206155-8,29445.89UGCAUUUGCACCUGCACUUUAmiR530MIRNAShortStack
car-b2.0r1-556Cicer arietinum (Chickpea) 2.0Ca_LG_1:5294153-5294267+2,80115.50AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
car-b2.0r1-839Cicer arietinum (Chickpea) 2.0Ca_LG_1:7740620-7740701-1,92510.65UUGAGCCGUGCCAAUAUCACGmiR171MIRNAShortStack
car-b2.0r1-1704Cicer arietinum (Chickpea) 2.0Ca_LG_1:16198543-16198663+2001.11UGAUUUUGUUAAACUCACUGUMIRNAShortStack
car-b2.0r1-2350Cicer arietinum (Chickpea) 2.0Ca_LG_1:25241124-25241190+2,96816.42UAGCGAGUAUCUGUGCCUCUGAMIRNAShortStack
car-b2.0r1-2683Cicer arietinum (Chickpea) 2.0Ca_LG_1:28865712-28865799-1,7219.52UUUUUGUAGUGUAUAUCCCAAAMIRNAShortStack
car-b2.0r1-3281Cicer arietinum (Chickpea) 2.0Ca_LG_1:33688248-33688335-2,22112.29UUGAGCCGUGCCAAUAUCACAmiR171MIRNAShortStack
car-b2.0r1-3759Cicer arietinum (Chickpea) 2.0Ca_LG_1:37628068-37628186+12,95671.69UCAUUGAGUGCAGCGUUGAUGmiR397MIRNAShortStack
car-b2.0r1-3936Cicer arietinum (Chickpea) 2.0Ca_LG_1:39268826-39269082-158,441876.66UCGGACCAGGCUUCAUUCCCGmiR166MIRNAShortStack
car-b2.0r1-4487Cicer arietinum (Chickpea) 2.0Ca_LG_2:4742800-4742914+15,03783.20UGUGUUCUCAGGUCGCCCCUGmiR398MIRNAShortStack
car-b2.0r1-4609Cicer arietinum (Chickpea) 2.0Ca_LG_2:6247369-6247632+1,8039.98UCCAAAGGGAUCGCAUUGAUCCmiR393MIRNAShortStack
car-b2.0r1-4859Cicer arietinum (Chickpea) 2.0Ca_LG_2:8522412-8522485-1951.08UGAAGUGUUUGGGGGAACUCUmiR395MIRNAShortStack
car-b2.0r1-5008Cicer arietinum (Chickpea) 2.0Ca_LG_2:9928117-9928303+7,32840.55UUGGACUGAAGGGAGCUCCCmiR319MIRNAShortStack
car-b2.0r1-5042Cicer arietinum (Chickpea) 2.0Ca_LG_2:10254141-10254268+2,19312.13CGAAUCCUGAUGAUGCUGCAGmiR172MIRNAShortStack
car-b2.0r1-5190Cicer arietinum (Chickpea) 2.0Ca_LG_2:11642218-11642305+2,05911.39AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
car-b2.0r1-9148Cicer arietinum (Chickpea) 2.0Ca_LG_3:24228524-24228675+1,95310.81AGAUAUAUAUGAUUGUCUUAAGMIRNAShortStack
car-b2.0r1-9623Cicer arietinum (Chickpea) 2.0Ca_LG_3:28822546-28822753+5913.27UCCCUCAAAGGCUUCCAGUAUmiR862MIRNAShortStack
car-b2.0r1-9655Cicer arietinum (Chickpea) 2.0Ca_LG_3:29004637-29004753+1,7439.64UUACCAAUUCCGCCCAUUCCUAmiR482MIRNAShortStack
car-b2.0r1-9657Cicer arietinum (Chickpea) 2.0Ca_LG_3:29019785-29019935+56,684313.63UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
car-b2.0r1-10031Cicer arietinum (Chickpea) 2.0Ca_LG_3:32125570-32125731-1,1436.32UGAUAACAUUGUCGAUAACGGMIRNAShortStack
car-b2.0r1-10828Cicer arietinum (Chickpea) 2.0Ca_LG_3:39163148-39163243-28,052155.21UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAShortStack
car-b2.0r1-11395Cicer arietinum (Chickpea) 2.0Ca_LG_4:2514678-2514871+98,494544.97AUGCACUGCCUCUUCCCUGGCmiR408MIRNAShortStack
car-b2.0r1-11623Cicer arietinum (Chickpea) 2.0Ca_LG_4:4864333-4864442-268,9701,488.21GUUGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
car-b2.0r1-11765Cicer arietinum (Chickpea) 2.0Ca_LG_4:6023343-6023455+11,05761.18UUGGCAUUCUGUCCACCUCCmiR394MIRNAShortStack
car-b2.0r1-11823Cicer arietinum (Chickpea) 2.0Ca_LG_4:6702050-6702264-20,611114.04UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAShortStack
car-b2.0r1-11854Cicer arietinum (Chickpea) 2.0Ca_LG_4:6877225-6877320+9,70953.72AGAAUCUUGAUGAUGCUGCAGmiR172MIRNAShortStack
car-b2.0r1-11923Cicer arietinum (Chickpea) 2.0Ca_LG_4:7501933-7502128-61,637341.04UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
car-b2.0r1-13074Cicer arietinum (Chickpea) 2.0Ca_LG_4:17703007-17703214+2,87815.92CAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
car-b2.0r1-13187Cicer arietinum (Chickpea) 2.0Ca_LG_4:19044127-19044392-158,856878.95UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
car-b2.0r1-13249Cicer arietinum (Chickpea) 2.0Ca_LG_4:19567370-19567588+75,895419.93AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
car-b2.0r1-13315Cicer arietinum (Chickpea) 2.0Ca_LG_4:20042485-20042591-31,532174.47UUGACAGAAGAGAAUGAGCACmiR156MIRNAShortStack
car-b2.0r1-13665Cicer arietinum (Chickpea) 2.0Ca_LG_4:23110655-23110768+23,333129.10UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
car-b2.0r1-14383Cicer arietinum (Chickpea) 2.0Ca_LG_4:29512822-29512901+4622.56UGCCAAAGGAGAGUUGCCCUGmiR399MIRNAShortStack
car-b2.0r1-14709Cicer arietinum (Chickpea) 2.0Ca_LG_4:31903064-31903234-37,165205.63UUACCGAUUCCACCCAUUCCUAmiR2118MIRNAShortStack
car-b2.0r1-14757Cicer arietinum (Chickpea) 2.0Ca_LG_4:32509669-32509919-30,861170.75UUGGACUGAAGGGGCCUCUUmiR319MIRNAShortStack
car-b2.0r1-15336Cicer arietinum (Chickpea) 2.0Ca_LG_4:39019266-39019351-10,08355.79UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAShortStack
car-b2.0r1-17100Cicer arietinum (Chickpea) 2.0Ca_LG_5:7744782-7744866+1,4948.27AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
car-b2.0r1-17957Cicer arietinum (Chickpea) 2.0Ca_LG_5:19023478-19023576+1,6238.98UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
car-b2.0r1-18626Cicer arietinum (Chickpea) 2.0Ca_LG_5:27383128-27383245-2,69214.90UGGCGGAACUUUGUCCCGGGACMIRNAShortStack
car-b2.0r1-19403Cicer arietinum (Chickpea) 2.0Ca_LG_5:33862283-33862340+4612.55UCUAAAUCUUAAUCCAAUGGCMIRNAShortStack
car-b2.0r1-19469Cicer arietinum (Chickpea) 2.0Ca_LG_5:34546057-34546232-19,867109.92UGGACUGAAGGGGAGCUCCUUCmiR319MIRNAShortStack
car-b2.0r1-19531Cicer arietinum (Chickpea) 2.0Ca_LG_5:35057212-35057387-19,790109.50UGGACUGAAGGGGAGCUCCUUCmiR319MIRNAShortStack
car-b2.0r1-19680Cicer arietinum (Chickpea) 2.0Ca_LG_5:36126134-36126240+1,6208.96UCGGACCAGGCUUCAUUCCUCmiR166MIRNAShortStack
car-b2.0r1-19818Cicer arietinum (Chickpea) 2.0Ca_LG_5:37161127-37161391-105,435583.37GGAAUGUUGUCUGGCUCGAGGmiR166MIRNAShortStack
car-b2.0r1-20082Cicer arietinum (Chickpea) 2.0Ca_LG_5:39335547-39335659-6,87338.03UUGGCAUUCUGUCCACCUCCmiR394MIRNAShortStack
car-b2.0r1-21052Cicer arietinum (Chickpea) 2.0Ca_LG_6:1293642-1293741-9,84354.46AGAAUCUUGAUGAUGCUGCAGmiR172MIRNAShortStack
car-b2.0r1-21821Cicer arietinum (Chickpea) 2.0Ca_LG_6:7673850-7673960-1300.72UAGCCAAGGAUGGCUUGCCUAGmiR169MIRNAShortStack
car-b2.0r1-22196Cicer arietinum (Chickpea) 2.0Ca_LG_6:11069524-11069610+1490.82UGCCAAAGGAGAUUUGCCCAGmiR399MIRNAShortStack
car-b2.0r1-22508Cicer arietinum (Chickpea) 2.0Ca_LG_6:13671624-13671719+3952.19UUUCCAUUUUAGCUUUAGCUUMIRNAShortStack
car-b2.0r1-23513Cicer arietinum (Chickpea) 2.0Ca_LG_6:22465923-22466045+8,89949.24UCGCUGUUGCGUUGGCGAUUAMIRNAShortStack
car-b2.0r1-23516Cicer arietinum (Chickpea) 2.0Ca_LG_6:22478703-22478816+8,90849.29UCGCUGUUGCGUUGGCGAUUAMIRNAShortStack
car-b2.0r1-24887Cicer arietinum (Chickpea) 2.0Ca_LG_6:39119139-39119328+8,95649.55UUGAGCCGCGUCAAUAUCUCGmiR171MIRNAShortStack
car-b2.0r1-25420Cicer arietinum (Chickpea) 2.0Ca_LG_6:46160917-46161032-5,39429.85GUAGCAUCAUCAAGAUUCACmiR172MIRNAShortStack
car-b2.0r1-25493Cicer arietinum (Chickpea) 2.0Ca_LG_6:46792544-46792654-2151.19UGGUAUGUGAUUUGUAAAUGGMIRNAShortStack
car-b2.0r1-26462Cicer arietinum (Chickpea) 2.0Ca_LG_7:1249824-1250061-3,99622.11UUCAUUUUUAAAAUAGGCAUUGmiR1514MIRNAShortStack
car-b2.0r1-27584Cicer arietinum (Chickpea) 2.0Ca_LG_7:15415792-15415943+98,474544.86UGAAGCUGCCAGCAUGAUCUUAmiR167MIRNAShortStack
car-b2.0r1-28161Cicer arietinum (Chickpea) 2.0Ca_LG_7:23545476-23545608+44,809247.93AACCAGGCUCUGAUACCAUGAmiR1511MIRNAShortStack
car-b2.0r1-28603Cicer arietinum (Chickpea) 2.0Ca_LG_7:27708745-27708848+11,14161.64UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
car-b2.0r1-28677Cicer arietinum (Chickpea) 2.0Ca_LG_7:28235184-28235354+840,2014,648.84UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAShortStack
car-b2.0r1-30009Cicer arietinum (Chickpea) 2.0Ca_LG_7:38963912-38964025+1,1756.50CAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
car-b2.0r1-30011Cicer arietinum (Chickpea) 2.0Ca_LG_7:38971930-38972042+1,6028.86UGAGCCAGGGAUGACUUGCCGmiR169MIRNAShortStack
car-b2.0r1-30239Cicer arietinum (Chickpea) 2.0Ca_LG_7:41262002-41262147-2,38313.19UUGAGCCGCGCCAAUAUCACUmiR171MIRNAShortStack
car-b2.0r1-30301Cicer arietinum (Chickpea) 2.0Ca_LG_7:41808202-41808353+73,902408.90UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
car-b2.0r1-30532Cicer arietinum (Chickpea) 2.0Ca_LG_7:43963797-43963989+9,86454.58UUGAGCCGUGCCAAUAUCACGmiR171MIRNAShortStack
car-b2.0r1-30583Cicer arietinum (Chickpea) 2.0Ca_LG_7:44399945-44400077+64,281355.67UUCCACAGCUUUCUUGAACUGmiR396MIRNAShortStack
car-b2.0r1-30584Cicer arietinum (Chickpea) 2.0Ca_LG_7:44408918-44409190-87,063481.72UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
car-b2.0r1-30590Cicer arietinum (Chickpea) 2.0Ca_LG_7:44452009-44452156-2,32712.88UUGAGCCGCGCCAAUAUCACUmiR171MIRNAShortStack
car-b2.0r1-32280Cicer arietinum (Chickpea) 2.0Ca_LG_8:15018325-15018441+77,406428.29UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
car-b2.0r1-32508Cicer arietinum (Chickpea) 2.0Ca_LG_8:16558614-16558783+1,91610.60UUUGUGAGUAGACCAAACCAAAMIRNAShortStack
car-b2.0r1-33750Cicer arietinum (Chickpea) 2.0contig64320:290-384-1,4908.24UUCAGAGACUUUGAACAUACAMIRNAShortStack
car-b2.0r1-34250Cicer arietinum (Chickpea) 2.0scaffold01310:32384-32502-7,82543.30UUGUGUUCUCAGGUCACCCCUmiR398MIRNAShortStack
car-b2.0r1-34388Cicer arietinum (Chickpea) 2.0scaffold01564:7722-7804+8024.44UGGGUGAAAUUCAUGUAGUUCMIRNAShortStack
car-b2.0r1-34596Cicer arietinum (Chickpea) 2.0scaffold01927:44361-44455+1,85610.27UUGAGCCGUGCCAAUAUCACGmiR171MIRNAShortStack
car-b2.0r1-35413Cicer arietinum (Chickpea) 2.0scaffold03085:27725-27897+1,1166.18GAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
car-b2.0r1-35421Cicer arietinum (Chickpea) 2.0scaffold03098:9786-9869-4502.49GUCCUCAAGAUGCAGAUUACCMIRNAShortStack
car-b2.0r1-35619Cicer arietinum (Chickpea) 2.0scaffold03343:24105-24232-3131.73UUAAAAUCUACAUGGGUCCCMIRNAShortStack
car-b2.0r1-35633Cicer arietinum (Chickpea) 2.0scaffold03355:22177-22357-177,303981.02UUGGACUGAAGGGAGCUCCCmiR319MIRNAShortStack
car-b2.0r1-35800Cicer arietinum (Chickpea) 2.0scaffold03551:20381-20523+21,173117.15AAGCUCGGGAGGGAUAGCGCCmiR390MIRNAShortStack
car-b2.0r1-35876Cicer arietinum (Chickpea) 2.0scaffold03681:15266-15361-2311.28UGCCAAAGGAGAGCUGCCCUGmiR399MIRNAShortStack
car-b2.0r1-37301Cicer arietinum (Chickpea) 2.0scaffold05782:3155-3268-5713.16GGGCAUGUCUCUUUUGGCAGGmiR399MIRNAShortStack
car-b2.0r1-37556Cicer arietinum (Chickpea) 2.0scaffold06350:9302-9399+2,20412.20UUGAGCCGUGCCAAUAUCACAmiR171MIRNAShortStack
car-b2.0r1-38214Cicer arietinum (Chickpea) 2.0scaffold08365:3727-3812-3,24717.97UUUUUGUAGUGUAUAUCCCAAAMIRNAShortStack
car-b2.0r1-38942Cicer arietinum (Chickpea) 2.0scaffold11334:2350-2477-1,2266.78UUGAGCCGCGUCAAUAUCUUGmiR171MIRNAShortStack
car-b2.0r1-39766Cicer arietinum (Chickpea) 2.0scaffold17769:3302-3473+2,28612.65CGAAUCCUGAUGAUGCUGCAGmiR172MIRNAShortStack
car-b2.0r1-39904Cicer arietinum (Chickpea) 2.0scaffold19407:6549-6644+2241.24UGCCAAAGGAGAGCUGCCCUGmiR399MIRNAShortStack
car-b2.0r1-39967Cicer arietinum (Chickpea) 2.0scaffold19899:1151-1322+839,0034,642.21UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAShortStack
car-b2.0r1-39977Cicer arietinum (Chickpea) 2.0scaffold19984:3084-3253-841,4104,655.53UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAShortStack
car-b2.0r1-40159Cicer arietinum (Chickpea) 2.0scaffold22485:2614-2701+2,21012.23UUGAGCCGUGCCAAUAUCACAmiR171MIRNAShortStack