het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Cuscuta campestris (Field Dodder) genome build 0.1 (ccm-b0.1)

Version 0.1 assembly of Cuscuta campestris isolate 'doddi' described in Shahid et al. 2018


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Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ccm-MIR12487Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig106526:2853-2982+54,343661.06AGGAAACAUAUUGUGGCUCGGCMIRNAShahid_et_al_2018
ccm-MIR12475Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig114736:3597-3720+1,65820.17UUGCUAGAAUAUGAAGAGGUUMIRNAShahid_et_al_2018
ccm-MIR12492Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig115217:5964-6242-17,378211.40CGUCAUUGGAAUGGGAUUGGAUMIRNAShahid_et_al_2018
ccm-MIR12490Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig122202:87-299+143,0821,740.52CACGAAUAAAGAAAGGCGACUUMIRNAShahid_et_al_2018
ccm-MIR12480Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig127272:2265-2551+6,78882.57UGUCCUCUCCUCCGUAUAGGUAMIRNAShahid_et_al_2018
ccm-MIR12483Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig134057:54735-54847+8,664105.39AUAUGGAAGAUUGACUAGGUCCMIRNAShahid_et_al_2018
ccm-MIR12482Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig14346:21003-21207+1,98524.15UUAGGACAAACAUUUGAGAGACMIRNAShahid_et_al_2018
ccm-MIR12489Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig14569:48395-48618+6,04073.47GUGAAACUUGGGGGUCUCGUGMIRNAShahid_et_al_2018
ccm-MIR12474aCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig14623:115990-116150-16,275197.98AGUGGAUGGCAAGAAGUGAGCOtherRNAShahid_et_al_2018
ccm-MIR12485Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig15124:36824-36914+1,09813.36CUGUGUAGGUAAUUUAACCCUCMIRNAShahid_et_al_2018
ccm-MIR12486Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig16234:16767-17026+10,765130.95CCCGCACCUGAACUUCCAAAGAsiRNA22Shahid_et_al_2018
ccm-MIR12464Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig186469:8369-8508-4,46754.34GAUGUUGAGAUUGAAGUGGUGMIRNAShahid_et_al_2018
ccm-MIR12497aCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig187649:7556-7767-222,6022,707.84UGUACCAUGAUUUGUAGACGAGMIRNAShahid_et_al_2018
ccm-MIR12463aCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig19595:2077-2212-1,11913.61UCUGCAUGUAUUCAUAAACAAOtherRNAShahid_et_al_2018
ccm-MIR12463bCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig19595:8961-9108+27,583335.53UUUGCAUAAAUUCGUAGACUAGMIRNAShahid_et_al_2018
ccm-MIR12469aCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig204051:37451-37583-95,6751,163.84CAGCUUGAAAUGUAGUAUCCUMIRNAShahid_et_al_2018
ccm-MIR12467Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig215394:3060-3177-6047.35CAGGAGCUAUGUAUGCAGGGAMIRNAShahid_et_al_2018
ccm-MIR12488Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig22699:1096-1206-5,20563.32UAGAGCGGAAAGGAUCGUCCACMIRNAShahid_et_al_2018
ccm-MIR12468Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig235364:2281-2515+1,15013.99GAGAUUGCUGAAAAAGAAGAAMIRNAShahid_et_al_2018
ccm-MIR12472Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig236501:1421-1663-2,51730.62UUGGCAAGUAAUUUUGAGGAUMIRNAShahid_et_al_2018
ccm-MIR12470Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig2385:55848-55969-3,57943.54GUAAAGGACAAUACAAGUGCUMIRNAShahid_et_al_2018
ccm-MIR12466Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig262405:8916-9065-5,29964.46GAGUGACGAGAAAGUGGCGUAMIRNAShahid_et_al_2018
ccm-MIR12477Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig27097:9538-9668-7,40490.07CCCGGACACUUUGCAAGGAAAMIRNAShahid_et_al_2018
ccm-MIR12496Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig27666:33785-33900-8,575104.31GCUCAGGGGCCGAGAUGCAUGMIRNAShahid_et_al_2018
ccm-MIR12465bCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig27979:474-687-8,431102.56UCUUGGUGAUGUUUGGGACGACMIRNAShahid_et_al_2018
ccm-MIR12465aCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig331847:3772-3941-2,57031.26UUCUUACUAAUAUUAGGGACUMIRNAShahid_et_al_2018
ccm-MIR12493Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig338037:1946-2149+2,26527.55UUAUCUUUGUAGUCUUGCCAAGMIRNAShahid_et_al_2018
ccm-MIR12495Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig373329:2643-2780+4,31352.47UACUCAGGCGCGGCGUAGCCAUMIRNAShahid_et_al_2018
ccm-MIR12478Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig3790:21153-21345+1,75221.31UCUCUGUGUACUGUAUUUCUUMIRNAShahid_et_al_2018
ccm-MIR12494bCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig400327:897-990+6,36477.42UCCAUAUGUAUUGAGCUGUCUCMIRNAShahid_et_al_2018
ccm-MIR12494aCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig437972:43817-43906-2783.38GACAAUUCAAUACAUAUGGACAMIRNAShahid_et_al_2018
ccm-MIR12473Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig437972:48308-48418-3,76745.82UGACUGAGAAGUUGAGUGCUAMIRNAShahid_et_al_2018
ccm-MIR12476bCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig472813:11323-11474-2,12425.84GAGAGGUGGUUGGCGAUUCCCCMIRNAShahid_et_al_2018
ccm-MIR12474bCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig486926:324-418+5,52367.19UGAAUGGAUGGAAAGAAGUGCGsiRNA21Shahid_et_al_2018
ccm-MIR12469bCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig487665:512-665+59,199720.13CAGCUCGAAUCGUAGUAACCGAMIRNAShahid_et_al_2018
ccm-MIR12481Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig523858:955-1069+8,283100.76AUAUGUAGCAAUUUUGAAGAAUMIRNAShahid_et_al_2018
ccm-MIR164Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig557877:1284-1511-16,921205.84CAUGUGCCCUGUUUCUCCACCMIRNAShahid_et_al_2018
ccm-MIR12497bCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig607933:460-600-1,54518.79UGUACCAUGAUUUGCAUACCAAOtherRNAShahid_et_al_2018
ccm-MIR12471Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig638850:244-356+3,82746.55ACAGGAGAGAAUGAAAAUGGAMIRNAShahid_et_al_2018
ccm-MIR12476aCuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig731890:1240-1380-4845.89UAGUUUCACCCACCGUCUCUCMIRNAShahid_et_al_2018
ccm-MIR12484Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig747156:2163-2331-88310.74AAAGGAUGGUGGGAAUUCCUUUOtherRNAShahid_et_al_2018
ccm-MIR12491Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig89165:8140-8361+2,24327.29UCUUCUUCCCAUAUUUGCUCUAMIRNAShahid_et_al_2018
ccm-MIR12479Cuscuta campestris (Field Dodder) 0.1Cp_v0.1_Contig96301:6237-6387+8,960108.99UGUCCCGGUGAACAGUUUUCUUMIRNAShahid_et_al_2018