Data from Lunardon et al. (2020)

Annotations viewer

Genome

Cuscuta campestris (Field Dodder) genome build 0.32 (ccm-b0.32)

Version 0.32 assembly of the Cuscuta campestris genome from Vogel et al. 2018

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Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Locus Type	Annotation Source
ccm-MIR12469b_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold108:146587-146740	-	59,201	720.15	CAGCUCGAAUCGUAGUAACCGA	MIRNA	Shahid_et_al_2018
ccm-MIR12466_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold11:906235-906418	-	5,308	64.57	GAGUGACGAGAAAGUGGCGUA	MIRNA	Shahid_et_al_2018
ccm-MIR12481_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold110:33510-33624	-	8,284	100.77	AUAUGUAGCAAUUUUGAAGAAU	MIRNA	Shahid_et_al_2018
ccm-MIR12496_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold110:879140-879247	+	8,575	104.31	GCUCAGGGGCCGAGAUGCAUG	MIRNA	Shahid_et_al_2018
ccm-MIR12476b_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold110:1580665-1580857	+	481	5.85	UAGUUUCACCCACCGUCUCUC	MIRNA	Shahid_et_al_2018
ccm-MIR12476a_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold110:1580719-1580872	+	485	5.90	UAGUUUCACCCACCGUCUCUC	MIRNA	Shahid_et_al_2018
ccm-MIR12474a_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold111:467882-468073	+	16,279	198.03	AGUGGAUGGCAAGAAGUGAGC	OtherRNA	Shahid_et_al_2018
ccm-MIR12474b_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold111:467969-468063	+	16,278	198.01	AGUGGAUGGCAAGAAGUGAGC	OtherRNA	Shahid_et_al_2018
ccm-MIR12497a_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold111:801256-801507	+	176,493	2,146.95	UGUACCAUGAUUUGUAGACGAG	MIRNA	Shahid_et_al_2018
ccm-MIR12497b_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold111:802699-802808	.	83	1.01	AAAUGUCUCUGCAUACAUCUGGCG	siRNA24	Shahid_et_al_2018
ccm-MIR12486_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold130:959321-959425	+	10,758	130.87	CCCGCACCUGAACUUCCAAAGA	MIRNA	Shahid_et_al_2018
ccm-MIR12480_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold136:450369-450528	-	5,071	61.69	UGUCCUCUCCUCCGUAUAGGUA	MIRNA	Shahid_et_al_2018
ccm-MIR12474a_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold13b:233008-233205	+	5,519	67.14	UGAAUGGAUGGAAAGAAGUGCG	siRNA21	Shahid_et_al_2018
ccm-MIR12474b_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold13b:233101-233195	+	5,519	67.14	UGAAUGGAUGGAAAGAAGUGCG	siRNA21	Shahid_et_al_2018
ccm-MIR12497a_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold13b:579762-580012	+	441	5.37	UGUACCAUGAUUUGCACACGAG	MIRNA	Shahid_et_al_2018
ccm-MIR12497b_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold13b:602944-603120	+	1,531	18.62	UGUACCAUGAUUUGCAUACCAA	OtherRNA	Shahid_et_al_2018
ccm-MIR12497b_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold13b:603111-603271	+	17	0.21	GGUGUGCAAAUUGUGG	OtherRNA	Shahid_et_al_2018
ccm-MIR12497a_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold13b:626381-626499	+	4	0.05	UUUGUGCACACACUUAGGCUUUUUGGCA	OtherRNA	Shahid_et_al_2018
ccm-MIR12468_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold142:389126-389254	+	1,150	13.99	GAGAUUGCUGAAAAAGAAGAA	MIRNA	Shahid_et_al_2018
ccm-MIR12468_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold142:397280-397406		0	0.00		NotExpressed	Shahid_et_al_2018
ccm-MIR12485_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold148:459148-459258	+	1,098	13.36	CUGUGUAGGUAAUUUAACCCUC	MIRNA	Shahid_et_al_2018
ccm-MIR12470_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold14b:884798-884899	-	3,579	43.54	GUAAAGGACAAUACAAGUGCU	MIRNA	Shahid_et_al_2018
ccm-MIR12480_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold14b:1771182-1771363	+	1,208	14.70	CCUGUACGGAGGGGGGACAAC	OtherRNA	Shahid_et_al_2018
ccm-MIR12480_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold14b:1787349-1787510	-	7,834	95.30	UCUGUGCGGAGGAGAGGACGGC	MIRNA	Shahid_et_al_2018
ccm-MIR12471_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold155:552668-552777	-	3,828	46.57	ACAGGAGAGAAUGAAAAUGGA	MIRNA	Shahid_et_al_2018
ccm-MIR12472_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold157:653244-653536	-	2,502	30.44	UUGGCAAGUAAUUUUGAGGAU	MIRNA	Shahid_et_al_2018
ccm-MIR12495_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold165:421858-422015	+	2,607	31.71	UACUCAGGCGCGGCGUAGCCAUU	MIRNA	Shahid_et_al_2018
ccm-MIR12495_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold165:425827-425984	+	4,578	55.69	UACUCAGGCGCGGCGUAGCCAUU	MIRNA	Shahid_et_al_2018
ccm-MIR12495_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold165:444387-444468	+	339	4.12	GGCUACGUUGCACUGAGUAUA	siRNA21	Shahid_et_al_2018
ccm-MIR12487_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold177:706926-707049	+	335	4.08	GAAAACAUAUUGUUGCUCGAC	MIRNA	Shahid_et_al_2018
ccm-MIR12494b_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold177:940452-940565	+	6,528	79.41	UCCAUAUGUAUUGAGCUGUCUC	MIRNA	Shahid_et_al_2018
ccm-MIR12475_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold185:328729-328851	-	3	0.04	AAUGUUGCUGUAAUGUGAAGAGGC	siRNA24	Shahid_et_al_2018
ccm-MIR12482_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold190a:470827-470947	+	87	1.06	AUCUCUCAAAUGUUUGUCCCG	nearMIRNA	Shahid_et_al_2018
ccm-MIR12487_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold191:250352-250481	+	54,344	661.07	AGGAAACAUAUUGUGGCUCGGC	MIRNA	Shahid_et_al_2018
ccm-MIR12487_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold191:256552-256679	+	44	0.54	GAAAACAUAUUGUUGCUCGAC	siRNA21	Shahid_et_al_2018
ccm-MIR12473_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold191:522963-523063	+	3,766	45.81	UGACUGAGAAGUUGAGUGCUA	MIRNA	Shahid_et_al_2018
ccm-MIR12494b_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold191:527477-527589	+	91	1.11	UCCAUAUGUAUUGAGCUGUU	nearMIRNA	Shahid_et_al_2018
ccm-MIR12494a_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold191:527501-527570	+	91	1.11	UCCAUAUGUAUUGAGCUGUU	nearMIRNA	Shahid_et_al_2018
ccm-MIR12497b_m4	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold196a:43571-43629		0	0.00		NotExpressed	Shahid_et_al_2018
ccm-MIR12488_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold196a:558342-558442	-	5,206	63.33	UAGAGCGGAAAGGAUCGUCCAC	MIRNA	Shahid_et_al_2018
ccm-MIR12478_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold24:1949858-1949969	-	1,750	21.29	UCUCUGUGUACUGUAUUUCUU	MIRNA	Shahid_et_al_2018
ccm-MIR12489_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold240:165749-165920	-	6,037	73.44	GUGAAACUUGGGGGUCUCGUG	MIRNA	Shahid_et_al_2018
ccm-MIR12479_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold26:2523660-2523809	-	2,603	31.66	GGAGAUUGUACAAAGAGAUACU	MIRNA	Shahid_et_al_2018
ccm-MIR12469a_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold308:309755-309877	+	95,671	1,163.79	CAGCUUGAAAUGUAGUAUCCU	MIRNA	Shahid_et_al_2018
ccm-MIR12464_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold31:129884-130023	+	4,468	54.35	GAUGUUGAGAUUGAAGUGGUG	MIRNA	Shahid_et_al_2018
ccm-MIR12467_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold318:82082-82189	+	604	7.35	CAGGAGCUAUGUAUGCAGGGA	MIRNA	Shahid_et_al_2018
ccm-MIR12484_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold33:854617-854815	+	881	10.72	AAAGGAUGGUGGGAAUUCCUUU	OtherRNA	Shahid_et_al_2018
ccm-MIR12476b_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold35:1409447-1409643	-	2,124	25.84	GAGAGGUGGUUGGCGAUUCCCC	MIRNA	Shahid_et_al_2018
ccm-MIR12496_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold35:2108834-2108920	.	20	0.24	UUGCGAGAUCAGGAGCGGAGAUA	siRNA24	Shahid_et_al_2018
ccm-MIR12492_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold35:2406878-2407152	+	17,373	211.33	CGUCAUUGGAAUGGGAUUGGAU	MIRNA	Shahid_et_al_2018
ccm-MIR12483_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold37:792469-792504	-	192	2.34	ACUUAGUCAAUCUUCCAUAACU	siRNA22	Shahid_et_al_2018
ccm-MIR12483_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold37:792778-792805	.	19	0.23	ACUUAGUCAAUCUUCCAU	OtherRNA	Shahid_et_al_2018
ccm-MIR12483_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold37:792832-792892	-	8,447	102.75	AUAUGGAAGAUUGACUAGGUCC	siRNA22	Shahid_et_al_2018
ccm-MIR12465a_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold41:1115006-1115234	-	2,562	31.17	UUCUUACUAAUAUUAGGGACU	MIRNA	Shahid_et_al_2018
ccm-MIR12479_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold43:501229-501379	+	8,802	107.07	UGUCCCGGUGAACAGUUUUCUU	MIRNA	Shahid_et_al_2018
ccm-MIR164_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold44:569489-569705	-	1,794	21.82	CAUGUGCCCUCUUUCUCCAAC	MIRNA	Shahid_et_al_2018
ccm-MIR164_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold48:1350557-1350831	+	16,835	204.79	CAUGUGCCCUGUUUCUCCACC	MIRNA	Shahid_et_al_2018
ccm-MIR12479_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold494:92422-92513		0	0.00		NotExpressed	Shahid_et_al_2018
ccm-MIR12493_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold5:136809-136916	-	2,263	27.53	UUAUCUUUGUAGUCUUGCCAAG	siRNA22	Shahid_et_al_2018
ccm-MIR12466_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold57:48129-48313	-	783	9.53	CGCCACUUCUUCGUCACUCCC	MIRNA	Shahid_et_al_2018
ccm-MIR12490_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold59:1855114-1855263	-	146,150	1,777.84	CACGAAUAAAGAAAGGCGACUU	MIRNA	Shahid_et_al_2018
ccm-MIR12490_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold59:1863187-1863341	-	180	2.19	ACGAAUAAAGAAAGGUGACUC	MIRNA	Shahid_et_al_2018
ccm-MIR12491_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold6:2531900-2532001	+	2,209	26.87	UCUUCUUCCCAUAUUUGCUCUA	MIRNA	Shahid_et_al_2018
ccm-MIR12463b_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold7:1040594-1040711	-	27,581	335.51	UUUGCAUAAAUUCGUAGACUAG	MIRNA	Shahid_et_al_2018
ccm-MIR12463a_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold7:1050547-1050710	+	1,115	13.56	UCUGCAUGUAUUCAUAAACAA	OtherRNA	Shahid_et_al_2018
ccm-MIR12463a_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold7:1057146-1057309	-	34	0.41	UUUGCAUAUAUUCAUAUACCA	MIRNA	Shahid_et_al_2018
ccm-MIR12465a_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold79:376914-377132	+	795	9.67	UUCUUACUAAUAUUAGGGACU	nearMIRNA	Shahid_et_al_2018
ccm-MIR12463b_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold9:97431-97479	-	1	0.01	UCUGCAUAAAUUCAUAGACUAG	siRNA22	Shahid_et_al_2018
ccm-MIR12463a_m3	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold9:103147-103310	+	398	4.84	UCUGCAUGUAUUCGUACACCA	MIRNA	Shahid_et_al_2018
ccm-MIR12463b_m2	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold9:114788-114897	-	21	0.26	UUUGCAUAAAUUCGUAAACUAG	siRNA22	Shahid_et_al_2018
ccm-MIR12475_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold90:995588-995711	+	1,657	20.16	UUGCUAGAAUAUGAAGAGGUU	MIRNA	Shahid_et_al_2018
ccm-MIR12477_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold92b:991770-991920	+	7,405	90.08	CCCGGACACUUUGCAAGGAAA	MIRNA	Shahid_et_al_2018
ccm-MIR12482_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold94:850291-850428	+	1,979	24.07	UUAGGACAAACAUUUGAGAGAC	MIRNA	Shahid_et_al_2018
ccm-MIR12465b_m1	Cuscuta campestris (Field Dodder) 0.32	Ccam0.32_scaffold99:713626-713889	-	11,053	134.45	UCUUGGUGAUGUUUGGGACGAC	MIRNA	Shahid_et_al_2018