Lunardon et al. 2020

Genome and annotations summary

Version 3.0 genome assembly from Phytozome 12

Small RNA Loci

Click links below to show sub-sets of annotations

Small RNA-seq data

Reference Set

accession

aligned reads

unaligned reads

source db

is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.

tissue

ecotype / cultivar

genotype

replicate id Alignments that are biological replicates have the same replicate ids

refset id If set, the alignment is part of the indicated reference set

description

mpo-b3.0r1

25,970,959

6,845,600

mixed

Unknown

wild-type

Reference set - merge of 4 libraries

Invidiual alignments (4)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
DRR042261_1	7,903,189	2,211,142	SRA	0	Mature thalli	Tak-1	wild-type	b	1	Mature thalli
DRR042262_1	4,582,523	1,009,763	SRA	0	Antheridial heads	Tak-1	wild-type	c	1	Antheridial heads with developing and mature antherida
DRR042263_1	4,161,286	1,667,271	SRA	0	Archegonial heads	Tak-1	wild-type	d	1	Archegonial heads before fertilization
SRR2179617_1_ca	9,323,961	1,957,424	SRA	0	Thalli	Unknown	wild-type	e	1	Thalli

	ShortStack
MIRNA	158
nearMIRNA	81
siRNA20	43
siRNA21	1,196
siRNA22	55
siRNA23	310
siRNA24	1,466
OtherRNA	18,205
NotExpressed	0

Data from Lunardon et al. (2020)

Genome and annotations summary

Marchantia polymorpha (Common Liverwort) genome build 3.0 (mpo-b3.0)

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BLAST search

Small RNA Loci

Small RNA-seq data

Reference Set

Invidiual alignments (4)