Lunardon et al. 2020

Genome and annotations summary

Version v1 of Spinacia oleracea cv. Sp75 from SpinachBase

Small RNA Loci

Click links below to show sub-sets of annotations

Small RNA-seq data

Reference Set

accession

aligned reads

unaligned reads

source db

is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.

tissue

ecotype / cultivar

genotype

replicate id Alignments that are biological replicates have the same replicate ids

refset id If set, the alignment is part of the indicated reference set

description

spinach_all_reference_set

13,415,462

4,303,555

none

leaf

sp75

refset1

merge of 2 libraries - reference set 1

Invidiual alignments (2)

accession	aligned reads	unaligned reads	source db	is refset? Alignments that are reference sets (value of 1) are mergers of other component libraries used to compile master small RNA annotations for a species.	tissue	ecotype / cultivar	genotype	replicate id Alignments that are biological replicates have the same replicate ids	refset id If set, the alignment is part of the indicated reference set	description
GSM2805294	10,230,534	3,115,499	GEO	0	leaf	sp75	wt	A	1	leaf (5-weeks-old plants -- leaf tip) -- control conditions
GSM2805295	3,184,928	1,188,056	GEO	0	leaf	sp75	wt	B	1	leaf (3-weeks-old plants -- leaf tip) -- control conditions

	ShortStack
MIRNA	39
nearMIRNA	58
siRNA20	12
siRNA21	203
siRNA22	326
siRNA23	2,915
siRNA24	47,960
OtherRNA	6,164
NotExpressed	0

Data from Lunardon et al. (2020)

Genome and annotations summary

Spinacia oleracea (Spinach) genome build 1 (sol-b1)

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BLAST search

Small RNA Loci

Small RNA-seq data

Reference Set

Invidiual alignments (2)