het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Setaria italica (Foxtail Millet) genome build 2 (sit-b2)

Version v2 of Setaria italica cv. Yugu1 from Phytozome

Locus type


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Annotation source

Name contains:

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NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
sit-b2r1-4883Setaria italica (Foxtail Millet) 2scaffold_2:23430739-23430763+1891.53UUCCUUGACUUGCUCAAAAAUAGsiRNA23ShortStack
sit-b2r1-5833Setaria italica (Foxtail Millet) 2scaffold_2:35921611-35921889-2792.26GUACCGCAAGUUGAUGUGAUGGAsiRNA23ShortStack
nov-sit-miR138-m1Setaria italica (Foxtail Millet) 2scaffold_3:6178532-6178706+1,54812.51CUUAGCCAAGAAUGGCUUGCCUAmiR1430siRNA23Yi_et_al_2013
nov-sit-miR32-m1Setaria italica (Foxtail Millet) 2scaffold_3:6178532-6178706+1,54812.51CUUAGCCAAGAAUGGCUUGCCUAmiR1430siRNA23Yi_et_al_2013
sit-b2r1-7856Setaria italica (Foxtail Millet) 2scaffold_3:6178550-6178670+1,54812.51CUUAGCCAAGAAUGGCUUGCCUAmiR1430siRNA23ShortStack
sit-b2r1-8483Setaria italica (Foxtail Millet) 2scaffold_3:12605817-12605891+3723.01UAGAGAAGUUUGACUUAGGACGAmiR437siRNA23ShortStack
sit-b2r1-8841Setaria italica (Foxtail Millet) 2scaffold_3:16670814-16670849+710.57UUAGGCUUAAUAGAUUCGUCUUUsiRNA23ShortStack
sit-b2r1-9391Setaria italica (Foxtail Millet) 2scaffold_3:22938418-22938471+670.54CAUGUAGUACUAAAUGUAGACGAsiRNA23ShortStack
sit-b2r1-12767Setaria italica (Foxtail Millet) 2scaffold_4:31996786-31996835-2582.09CUCCUUGACCAUAUAUACUUAAGsiRNA23ShortStack
sit-b2r1-15759Setaria italica (Foxtail Millet) 2scaffold_5:30081837-30081863+2021.63UUGGCUAAUUAUGAUGGUUGCAGsiRNA23ShortStack
sit-b2r1-18531Setaria italica (Foxtail Millet) 2scaffold_6:15291436-15291601+1,69813.73CGGGUCCCACCGGGCGUGCCAsiRNA23ShortStack
nov-sit-miR97-m1Setaria italica (Foxtail Millet) 2scaffold_7:18180352-18180536-19,552158.05UAGCCAAGGAUGACUUGCCUACAmiR169siRNA23Yi_et_al_2013
sit-b2r1-20707Setaria italica (Foxtail Millet) 2scaffold_7:18180366-18180500-19,550158.04UAGCCAAGGAUGACUUGCCUACAmiR169siRNA23ShortStack
sit-b2r1-23301Setaria italica (Foxtail Millet) 2scaffold_8:6752450-6752975-2,65121.43AUUACUGACUAUGCGCUCUAUAGsiRNA23ShortStack
sit-b2r1-24325Setaria italica (Foxtail Millet) 2scaffold_8:31209258-31209282-2231.80UAGCAUACUGUAGCGUUUCGCUUsiRNA23ShortStack
sit-b2r1-27793Setaria italica (Foxtail Millet) 2scaffold_9:36940210-36940243.290.23UGUUCGGAUACUAAUUAGGAAGAsiRNA23ShortStack
sit-b2r1-28683Setaria italica (Foxtail Millet) 2scaffold_9:47897652-47897884+6084.92GAGACUAACAACUUCACAAUCAGsiRNA23ShortStack
sit-b2r1-29673Setaria italica (Foxtail Millet) 2scaffold_9:57661267-57661294+1721.39AAAGAGUAGCGUUGAUACACCGUsiRNA23ShortStack