het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Setaria italica (Foxtail Millet) genome build 2 (sit-b2)

Version v2 of Setaria italica cv. Yugu1 from Phytozome

Locus type


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Annotation source

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NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
sit-b2r1-244Setaria italica (Foxtail Millet) 2scaffold_1:2206966-2207498.2181.76UCUGUCUCUGUAGCACGUCGGUsiRNA22ShortStack
sit-b2r1-696Setaria italica (Foxtail Millet) 2scaffold_1:6699591-6699621+11,81495.50UGAAGCUGCCAGCAUGAUCUGAmiR167siRNA22ShortStack
sit-b2r1-1594Setaria italica (Foxtail Millet) 2scaffold_1:24078497-24078555+4913.97UCGCCCCCUACCUGGCGCGCCAsiRNA22ShortStack
sit-b2r1-1874Setaria italica (Foxtail Millet) 2scaffold_1:27753954-27754192.2451.98CCUCAAACACCGCUACACGGGCsiRNA22ShortStack
sit-b2r1-2319Setaria italica (Foxtail Millet) 2scaffold_1:31876901-31876951-2,36319.10AGCCUAAACCGUGAAAACGGGGsiRNA22ShortStack
sit-b2r1-2322Setaria italica (Foxtail Millet) 2scaffold_1:31913644-31913668+4673.78AUCCUUAACCUGUUGAAUGAAGsiRNA22ShortStack
sit-b2r1-2615Setaria italica (Foxtail Millet) 2scaffold_1:34897461-34897485-2031.64UUGGACAUGAAAAGAUGGUUUUsiRNA22ShortStack
sit-b2r1-3294Setaria italica (Foxtail Millet) 2scaffold_107:55-617.7,48760.52UAAACUCAAAGCAACAGACUGGsiRNA22ShortStack
sit-b2r1-3295Setaria italica (Foxtail Millet) 2scaffold_107:1100-1763.6,71154.25UUCAGGAAAAGAGCAUGUUGCAsiRNA22ShortStack
sit-b2r1-3296Setaria italica (Foxtail Millet) 2scaffold_11:10005-12917+805,6056,512.29UAGACUGAUGAAUAAAAGGUAsiRNA22ShortStack
sit-b2r1-3384Setaria italica (Foxtail Millet) 2scaffold_12:276765-276782.100.08UUUGUCAACUGAAGUCGCGCGUsiRNA22ShortStack
sit-b2r1-3458Setaria italica (Foxtail Millet) 2scaffold_175:6956-7327.4633.74AAACCUCUGCAUGUGUCGUUCsiRNA22ShortStack
sit-b2r1-4497Setaria italica (Foxtail Millet) 2scaffold_2:12898467-12898674.1,76214.24AGCCAGCGAGGCAUGCGGUGAsiRNA22ShortStack
sit-b2r1-4816Setaria italica (Foxtail Millet) 2scaffold_2:21042458-21042736.2902.34AGGAGAACCCUAUGUGCGCAGAGAsiRNA22ShortStack
sit-b2r1-4817Setaria italica (Foxtail Millet) 2scaffold_2:21101017-21101249-2441.97UUCUAUUUUAUUAUUCAAGGCsiRNA22ShortStack
sit-b2r1-5169Setaria italica (Foxtail Millet) 2scaffold_2:28317592-28318636.8,49968.70UGGUGGAUGUCUUCAUGGAGUAsiRNA22ShortStack
sit-b2r1-7304Setaria italica (Foxtail Millet) 2scaffold_3:722431-725644.8,40467.94UGCAGAUAUGUUGUAAAGGCUCsiRNA22ShortStack
nov-sit-miR45-1-m1Setaria italica (Foxtail Millet) 2scaffold_3:724040-724533+7315.91UGAUGAGUAGAAAGCUACUAAsiRNA22Yi_et_al_2013
nov-sit-miR45-3-m1Setaria italica (Foxtail Millet) 2scaffold_3:724040-724533+7315.91UGAUGAGUAGAAAGCUACUAAsiRNA22Yi_et_al_2013
sit-b2r1-7305Setaria italica (Foxtail Millet) 2scaffold_3:725856-726122.1,43311.58UAGAUAGAGAUUGAAGAAGUAsiRNA22ShortStack
sit-b2r1-8104Setaria italica (Foxtail Millet) 2scaffold_3:8665902-8666248.2852.30UCCUGCAGAACAAGAAUGUCACsiRNA22ShortStack
sit-b2r1-8105Setaria italica (Foxtail Millet) 2scaffold_3:8666882-8667269.5534.47ACAGAACUUGGAGCGAAGAGGAsiRNA22ShortStack
sit-b2r1-8106Setaria italica (Foxtail Millet) 2scaffold_3:8667508-8667595.760.61UUGAACUCCGUAUCGGCAAUAGsiRNA22ShortStack
sit-b2r1-8107Setaria italica (Foxtail Millet) 2scaffold_3:8667725-8668016.5444.40UGAAGCAGAAUCUAGUGACAUUsiRNA22ShortStack
sit-b2r1-8108Setaria italica (Foxtail Millet) 2scaffold_3:8669217-8670040.1,1779.52ACAGAACUUGGAGCGAAGAGGAsiRNA22ShortStack
sit-b2r1-8109Setaria italica (Foxtail Millet) 2scaffold_3:8673332-8673619.1,79014.47UUACUGUAGCUCGUAAUCGGCsiRNA22ShortStack
sit-b2r1-8110Setaria italica (Foxtail Millet) 2scaffold_3:8673952-8674220.5644.56UUGGAUGUAUACGGUAUAACUAsiRNA22ShortStack
sit-b2r1-8112Setaria italica (Foxtail Millet) 2scaffold_3:8674466-8675267.1,56112.62UACGACUUGCAACAGGAACUGGsiRNA22ShortStack
sit-b2r1-8113Setaria italica (Foxtail Millet) 2scaffold_3:8675900-8676566.7816.31UUACUGUAGCUCGUAAUCGGCAsiRNA22ShortStack
sit-b2r1-8114Setaria italica (Foxtail Millet) 2scaffold_3:8676655-8677069.8606.95UUGAACUCCGUAUCGGCAAUAGsiRNA22ShortStack
sit-b2r1-8115Setaria italica (Foxtail Millet) 2scaffold_3:8677580-8679496.3,71830.06UGGAUGUAUACGGUAUAACUAUsiRNA22ShortStack
sit-b2r1-8116Setaria italica (Foxtail Millet) 2scaffold_3:8680260-8680513.3182.57UCUCCUGCAGAACAAGAGUGUCsiRNA22ShortStack
sit-b2r1-8118Setaria italica (Foxtail Millet) 2scaffold_3:8681503-8682089.3372.72UUUGUCUCACGAAUUAGCCUCsiRNA22ShortStack
sit-b2r1-9007Setaria italica (Foxtail Millet) 2scaffold_3:18777674-18778238.6054.89UAAGUGACUUAGGAACACAUCsiRNA22ShortStack
sit-b2r1-9453Setaria italica (Foxtail Millet) 2scaffold_3:23745732-23745777+7025.68UUGUUGAACUUUGCAUACCGUGsiRNA22ShortStack
sit-b2r1-9660Setaria italica (Foxtail Millet) 2scaffold_3:27326894-27326917+2031.64GGCCGAGAGGUGAUGACGAGGGsiRNA22ShortStack
sit-b2r1-9733Setaria italica (Foxtail Millet) 2scaffold_3:31328587-31328967-5364.33AAGUUGUUGGAAUGGUAUUGGGsiRNA22ShortStack
sit-b2r1-9734Setaria italica (Foxtail Millet) 2scaffold_3:31329155-31329348-1,1809.54AUCACUAGCGGAAGAAUACUCAsiRNA22ShortStack
sit-b2r1-9768Setaria italica (Foxtail Millet) 2scaffold_3:34131387-34131416+260.21AAGCUUUUGGCGGAGACUUUGUsiRNA22ShortStack
sit-b2r1-9769Setaria italica (Foxtail Millet) 2scaffold_3:34131580-34132523.5454.41AAAGAUUGGAAUACACUGUUGAsiRNA22ShortStack
sit-b2r1-9770Setaria italica (Foxtail Millet) 2scaffold_3:34134409-34134766.1551.25AGGAAGACAACGUUGGAUGGCsiRNA22ShortStack
sit-b2r1-9897Setaria italica (Foxtail Millet) 2scaffold_3:38275766-38276030.1110.90AUGGAAGUGGAAAUGGAGCUAGsiRNA22ShortStack
sit-b2r1-9900Setaria italica (Foxtail Millet) 2scaffold_3:38330082-38333053.2,19117.71UAGGCAUGCAAUGAACGUGGCsiRNA22ShortStack
sit-b2r1-11416Setaria italica (Foxtail Millet) 2scaffold_4:5073327-5073824.3863.12UUGUGGAAGGAACGGUGUAGUUsiRNA22ShortStack
sit-b2r1-12214Setaria italica (Foxtail Millet) 2scaffold_4:18653617-18653677-4733.82UCGCCCCCUACCUGGCGCGCCAsiRNA22ShortStack
sit-b2r1-12940Setaria italica (Foxtail Millet) 2scaffold_4:33644942-33651110.54,119437.48UAGGGAACAAAUGAUGGCACUsiRNA22ShortStack
sit-b2r1-12941Setaria italica (Foxtail Millet) 2scaffold_4:33651211-33651605.8,46768.45GAACAAGACCAACCUCUGACGGsiRNA22ShortStack
sit-b2r1-13041Setaria italica (Foxtail Millet) 2scaffold_4:34797899-34798204.3602.91UUGCUAAGUACAUGGGGUUsiRNA22ShortStack
sit-b2r1-13057Setaria italica (Foxtail Millet) 2scaffold_4:35003150-35003415+2,08816.88AGCGUGGCUGGGGACGGUGAGsiRNA22ShortStack
sit-b2r1-13058Setaria italica (Foxtail Millet) 2scaffold_4:35008259-35009225.1,26410.22UGGUGGAUGUCUUCAUGGAGUAsiRNA22ShortStack
sit-b2r1-13059Setaria italica (Foxtail Millet) 2scaffold_4:35010296-35011197.1,2319.95CGGGACAAGCUUACAUGCGGCsiRNA22ShortStack
sit-b2r1-13877Setaria italica (Foxtail Millet) 2scaffold_5:3070193-3070391-1050.85UUGCAAUUGUAGGAGUACGCCAsiRNA22ShortStack
sit-b2r1-14774Setaria italica (Foxtail Millet) 2scaffold_5:11732212-11732431.1731.40GCGGAAGGUGGACCUCACGGCGsiRNA22ShortStack
nov-sit-miR10-m1Setaria italica (Foxtail Millet) 2scaffold_5:19457226-19457371+250.20UUGGCUGAAACUAAAGAGGGUCsiRNA22Yi_et_al_2013
sit-b2r1-15500Setaria italica (Foxtail Millet) 2scaffold_5:26823225-26824274.5124.14AGGAAGAAGAAUGAAGAUGCCsiRNA22ShortStack
sit-b2r1-15501Setaria italica (Foxtail Millet) 2scaffold_5:26824433-26824653.1180.95AAAUGCUGCGGAACUGGGCAUUsiRNA22ShortStack
sit-b2r1-15504Setaria italica (Foxtail Millet) 2scaffold_5:26827101-26828315-8947.23UGACGGCUAUGUAUAAUCUUCsiRNA22ShortStack
sit-b2r1-16560Setaria italica (Foxtail Millet) 2scaffold_5:37695256-37695997.9257.48ACGGUGAGGGUGCAGACCGGGCsiRNA22ShortStack
sit-b2r1-17151Setaria italica (Foxtail Millet) 2scaffold_5:43514727-43514751-3793.06UUUGCUGACAUGUUGCUCCCAGsiRNA22ShortStack
sit-b2r1-17331Setaria italica (Foxtail Millet) 2scaffold_5:45342763-45345595.1,1739.48ACGAAACAAGUUCGAAACUGACAUsiRNA22ShortStack
sit-b2r1-17332Setaria italica (Foxtail Millet) 2scaffold_5:45345957-45347059.3382.73UAGGAGUUGACACGAGACGCCsiRNA22ShortStack
sit-b2r1-17333Setaria italica (Foxtail Millet) 2scaffold_5:45348171-45349699.5154.16UAAGUUGCAGAUGAUGAACAGsiRNA22ShortStack
sit-b2r1-17334Setaria italica (Foxtail Millet) 2scaffold_5:45349809-45350769.3903.15UCCUAUAACGUCGGCGUCGGCsiRNA22ShortStack
sit-b2r1-17335Setaria italica (Foxtail Millet) 2scaffold_5:45351760-45353663.8166.60UAGCUCCAAGUCGGGAACGAGCsiRNA22ShortStack
sit-b2r1-17337Setaria italica (Foxtail Millet) 2scaffold_5:45356605-45356946.600.49CCGAGGGCGGAACAAGGGCCGAsiRNA22ShortStack
sit-b2r1-17401Setaria italica (Foxtail Millet) 2scaffold_5:45884320-45885201.475,5943,844.57GGCGGUGCCAGAGAUCAGCGAAsiRNA22ShortStack
sit-b2r1-18021Setaria italica (Foxtail Millet) 2scaffold_6:4355791-4355945.1261.02UAGAGGCAGUAGGACCAGCCGCsiRNA22ShortStack
sit-b2r1-18314Setaria italica (Foxtail Millet) 2scaffold_6:7808134-7808448.2181.76UAGAGAUCGUCAUAUACAUCUsiRNA22ShortStack
sit-b2r1-18535Setaria italica (Foxtail Millet) 2scaffold_6:15377827-15378215.2,71821.97CGAGGGACGAGCUCCAACGGCsiRNA22ShortStack
sit-b2r1-19666Setaria italica (Foxtail Millet) 2scaffold_6:34170954-34170982-1,46111.81UAGUCCUCUUGCUGCACACAGUsiRNA22ShortStack
sit-b2r1-19826Setaria italica (Foxtail Millet) 2scaffold_6:35617251-35618241.34,790281.23AAAGAUCUCUGUUAAAGCACGGsiRNA22ShortStack
sit-b2r1-19827Setaria italica (Foxtail Millet) 2scaffold_6:35618874-35619784-7,33659.30GAAGAUGAGAAGAAGUCUCUGAsiRNA22ShortStack
sit-b2r1-19860Setaria italica (Foxtail Millet) 2scaffold_6:36008524-36009201.35,403286.19AGAAGAGGACAAUCGGAAUGAAsiRNA22ShortStack
sit-b2r1-19861Setaria italica (Foxtail Millet) 2scaffold_6:36009345-36010030.82,659668.19UGUACUGUAGAAUGGGAUUGUAsiRNA22ShortStack
sit-b2r1-19862Setaria italica (Foxtail Millet) 2scaffold_6:36011865-36015162.80,528650.97GAGUAGAAGUAGGAUACUGCAAsiRNA22ShortStack
sit-b2r1-20560Setaria italica (Foxtail Millet) 2scaffold_7:16682911-16683559.1,60813.00GUGCUGUGAAUAGUAACUUGAAsiRNA22ShortStack
sit-b2r1-20912Setaria italica (Foxtail Millet) 2scaffold_7:20008703-20008733-2622.12UUCACCGGUAUUACUCUUGUGCsiRNA22ShortStack
sit-b2r1-21720Setaria italica (Foxtail Millet) 2scaffold_7:26841352-26841526-9857.96GCGGGUAUAGUUUAGUGGUAAAsiRNA22ShortStack
sit-b2r1-22006Setaria italica (Foxtail Millet) 2scaffold_7:29044236-29046496.458,6933,707.95UCGACUCAAACUAGAACAACGGsiRNA22ShortStack
sit-b2r1-22315Setaria italica (Foxtail Millet) 2scaffold_7:32126949-32127311.6735.44AGAAGAAACGGAAGGUCUCUGAsiRNA22ShortStack
sit-b2r1-22324Setaria italica (Foxtail Millet) 2scaffold_7:32149570-32150594.7556.10UUCCCGGCUGUAUCAAGAAGGAsiRNA22ShortStack
sit-b2r1-22457Setaria italica (Foxtail Millet) 2scaffold_7:33379933-33384395+1,417,80911,461.17GCAGCAGGAUUUGGAUCGUGCsiRNA22ShortStack
sit-b2r1-22519Setaria italica (Foxtail Millet) 2scaffold_7:34056756-34060092.22,533182.15UGACUUUAGACAGAGAAAGGAUsiRNA22ShortStack
nov-sit-miR45-2-m1Setaria italica (Foxtail Millet) 2scaffold_7:34058013-34058510+4,17033.71CACCAGAAGACUCAACUAACGAsiRNA22Yi_et_al_2013
nov-sit-miR45-4-m1Setaria italica (Foxtail Millet) 2scaffold_7:34058013-34058510+4,17033.71CACCAGAAGACUCAACUAACGAsiRNA22Yi_et_al_2013
sit-b2r1-23454Setaria italica (Foxtail Millet) 2scaffold_8:9722353-9722498.1150.93AAAUGGAGAAAGAUGGAACAAGsiRNA22ShortStack
sit-b2r1-23480Setaria italica (Foxtail Millet) 2scaffold_8:10475357-10475761.12,30599.47UGGCUCGCUUCAGAACUAGGCCsiRNA22ShortStack
sit-b2r1-23481Setaria italica (Foxtail Millet) 2scaffold_8:10475882-10476107.5,30142.85UUUAAGCUCGAUCGUAUGGGGCsiRNA22ShortStack
sit-b2r1-23482Setaria italica (Foxtail Millet) 2scaffold_8:10476209-10477861.7,72262.42AGAUUCAGCCGGUCGUGUUGCsiRNA22ShortStack
sit-b2r1-23483Setaria italica (Foxtail Millet) 2scaffold_8:10478152-10478448.3432.77CGAGACCGAAGAUUCAGCCGGUsiRNA22ShortStack
sit-b2r1-23484Setaria italica (Foxtail Millet) 2scaffold_8:10478648-10478966.5164.17GUGGUGGUAGUAUAGAGGUGGAsiRNA22ShortStack
sit-b2r1-23485Setaria italica (Foxtail Millet) 2scaffold_8:10482821-10483288.1,74114.07UGAAUUUAAAUAGUGCCGCGAAsiRNA22ShortStack
sit-b2r1-23487Setaria italica (Foxtail Millet) 2scaffold_8:10484023-10484324.2261.83AUAGGUGCUCCACCCACUCCCGGUsiRNA22ShortStack
sit-b2r1-23488Setaria italica (Foxtail Millet) 2scaffold_8:10484403-10485009.4,44835.96UGGGGACGGUGAGGCUGCAGGCsiRNA22ShortStack
sit-b2r1-23491Setaria italica (Foxtail Millet) 2scaffold_8:10490650-10492821.6,04848.89CCUCAAACACCGCUACACGGGCsiRNA22ShortStack
sit-b2r1-23794Setaria italica (Foxtail Millet) 2scaffold_8:21528562-21528822.9197.43CGAGGGACGAGCUCCAACGGCsiRNA22ShortStack
sit-b2r1-23961Setaria italica (Foxtail Millet) 2scaffold_8:25199576-25199600-2672.16UCAUUUCUGAUAAGAUGUUCUCsiRNA22ShortStack
sit-b2r1-24387Setaria italica (Foxtail Millet) 2scaffold_8:32076751-32076796+7556.10UUGUUGAACUUUGCAUACCGUGsiRNA22ShortStack
sit-b2r1-24595Setaria italica (Foxtail Millet) 2scaffold_8:34781873-34782101-1,1389.20UGGAUUACUAAAUGUAGACGAAsiRNA22ShortStack
sit-b2r1-24916Setaria italica (Foxtail Millet) 2scaffold_8:38221564-38222486.4,93039.85UUAGAGCCUGCAGCAAAAGAAUsiRNA22ShortStack
nov-sit-miR94-m1Setaria italica (Foxtail Millet) 2scaffold_9:1745380-1745534-150.12UUGACAUAUGUUGAUGGUAUGAsiRNA22Yi_et_al_2013
sit-b2r1-26133Setaria italica (Foxtail Millet) 2scaffold_9:9852031-9852101-1,0658.61UUUCCGGCUAGGGCGUGGGACGsiRNA22ShortStack
sit-b2r1-26355Setaria italica (Foxtail Millet) 2scaffold_9:11831822-11831934-2191.77UUAUGCAUCUAGAUAUAGUGUUsiRNA22ShortStack
sit-b2r1-26408Setaria italica (Foxtail Millet) 2scaffold_9:12286134-12291427.422,2273,413.17UCAGGCUGCUGGAGACGAUGGsiRNA22ShortStack
nov-sit-miR118-1-m1Setaria italica (Foxtail Millet) 2scaffold_9:12288524-12289022.41,317334.00AGAUAGUAGCGAUGGUAGAUCCAsiRNA22Yi_et_al_2013
nov-sit-miR118-2-m1Setaria italica (Foxtail Millet) 2scaffold_9:12288524-12289022.41,317334.00AGAUAGUAGCGAUGGUAGAUCCAsiRNA22Yi_et_al_2013
sit-b2r1-27359Setaria italica (Foxtail Millet) 2scaffold_9:25288292-25288623.9027.29UGGCUCGCUUCAGAACUAGGCCsiRNA22ShortStack
sit-b2r1-27773Setaria italica (Foxtail Millet) 2scaffold_9:36755610-36756107-1,0238.27AAUAGAUUCGUUCUCGCGAAUUsiRNA22ShortStack
sit-b2r1-28100Setaria italica (Foxtail Millet) 2scaffold_9:41378734-41378874.1531.24UGGCUCGCUUCAGAACUAGGCsiRNA22ShortStack
sit-b2r1-28175Setaria italica (Foxtail Millet) 2scaffold_9:42533565-42534284.4923.98CGGGACAGACACUGAUGACGGUsiRNA22ShortStack