het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brachypodium distachyon (Stiff brome) genome build 1.0 (bdi-b1.0)

Version v1.0 of Brachypodium distachyon cv. Bd21 from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bdi-b1.0r1-56Brachypodium distachyon (Stiff brome) 1.01:202577-202601-3581.02UUUACUGACGUAGUACAAUGCAGsiRNA23ShortStack
bdi-b1.0r1-1351Brachypodium distachyon (Stiff brome) 1.01:5675098-5675313+1,1673.33GUGUCAUUUUCAUUAAGAAGCGCsiRNA23ShortStack
bdi-b1.0r1-6047Brachypodium distachyon (Stiff brome) 1.01:24618307-24618660-6,37318.20UAAUCUGACAAUUACCUUUGUAGsiRNA23ShortStack
bdi-b1.0r1-8471Brachypodium distachyon (Stiff brome) 1.01:34175706-34175729+270.08CAUCACUGAGGAGCUGAUGGCCUsiRNA23ShortStack
bdi-b1.0r1-10312Brachypodium distachyon (Stiff brome) 1.01:43644618-43644642.710.20GUGCUAGUUCUGGAUCGACUCACsiRNA23ShortStack
bdi-b1.0r1-13235Brachypodium distachyon (Stiff brome) 1.01:54918907-54919152+1,9005.43AAUGGGAGUAGAACAAAACGGUAsiRNA23ShortStack
bdi-b1.0r1-15879Brachypodium distachyon (Stiff brome) 1.01:65159807-65159838.720.21UUUUCGGCUUAUAGGACCGGCUUsiRNA23ShortStack
bdi-b1.0r1-17740Brachypodium distachyon (Stiff brome) 1.01:73465963-73465992+8842.53AAGAGUAGCGUUGAUACACCGUCsiRNA23ShortStack
bdi-b1.0r1-24763Brachypodium distachyon (Stiff brome) 1.02:27206244-27206269-3130.89UUUUCUAACAAGUACCUUUUCAGsiRNA23ShortStack
bdi-b1.0r1-26761Brachypodium distachyon (Stiff brome) 1.02:37291571-37291593-2420.69UCUGACUGAUGUGUUGUGUGCAGsiRNA23ShortStack
bdi-b1.0r1-28019Brachypodium distachyon (Stiff brome) 1.02:42657745-42657885-6511.86GUGUCCAAAAAAAGAAGCCGGUUsiRNA23ShortStack
bdi-b1.0r1-28394Brachypodium distachyon (Stiff brome) 1.02:44153805-44153834+5421.55AAAACUGACAGACUCUAUGCAGAsiRNA23ShortStack
bdi-b1.0r1-30835Brachypodium distachyon (Stiff brome) 1.02:54085880-54085953-3591.03UCGAACUAAAAUGGGGAUGACUUsiRNA23ShortStack
bdi-b1.0r1-35380Brachypodium distachyon (Stiff brome) 1.03:14662357-14662380-1760.50CUAACUAAUCAGGAAAUUGCAGsiRNA23ShortStack
bdi-b1.0r1-36477Brachypodium distachyon (Stiff brome) 1.03:18744639-18745182-1,8555.30AAUAUGGUACUGAAUUUCUAGCCsiRNA23ShortStack
bdi-b1.0r1-42246Brachypodium distachyon (Stiff brome) 1.03:44369391-44369426-1,7995.14UUCCUUAACGAACAGCAACAAAGsiRNA23ShortStack
bdi-b1.0r1-44110Brachypodium distachyon (Stiff brome) 1.03:51714200-51714338-1,6364.67UUCCAUAACUGUUGUUGCUCAAGsiRNA23ShortStack
bdi-b1.0r1-45237Brachypodium distachyon (Stiff brome) 1.03:56484940-56484966+3571.02AAAACUAAUUGUCUAGACUGCAGsiRNA23ShortStack
bdi-b1.0r1-47675Brachypodium distachyon (Stiff brome) 1.04:6792115-6792242-1,2893.68UGCUCUGACUGAAUUGAUGGCAGsiRNA23ShortStack
bdi-b1.0r1-55825Brachypodium distachyon (Stiff brome) 1.04:41463412-41463434+330.09UGGCUGUUGUACAAAGGAUGGAAsiRNA23ShortStack
bdi-b1.0r1-57784Brachypodium distachyon (Stiff brome) 1.05:830253-830276+4471.28UCUGGAUAACAUUUAUUUUGCAGsiRNA23ShortStack
bdi-b1.0r1-58978Brachypodium distachyon (Stiff brome) 1.05:6057479-6057501+180.05UUAAGUUACUUAGAUUGGACACAsiRNA23ShortStack