| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| bdi-b1.0r1-43 | Brachypodium distachyon (Stiff brome) 1.0 | 1:159930-160172 | . | 971 | 2.77 | AUCAAUAAUAAGUGUAGGAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-95 | Brachypodium distachyon (Stiff brome) 1.0 | 1:322470-322633 | + | 1,307 | 3.73 | UGAGAGGGGAACGAGAAGAAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-522 | Brachypodium distachyon (Stiff brome) 1.0 | 1:2361481-2361618 | - | 1,779 | 5.08 | UAAUACCGGGCAGAGGAAGUA | | siRNA21 | ShortStack |
| bdi-MIR7769-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:2375800-2376168 | + | 1,726 | 4.93 | UGUCAUGUUGGCACUGAUGGG | miR7769 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-613 | Brachypodium distachyon (Stiff brome) 1.0 | 1:2722020-2722331 | + | 14,549 | 41.56 | AAGCUCAGGAGGGAUAGCGCC | miR390 | siRNA21 | ShortStack |
| bdi-b1.0r1-760 | Brachypodium distachyon (Stiff brome) 1.0 | 1:3459040-3459279 | . | 811 | 2.32 | AGGACAAGUAAUUCCGGUCGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-848 | Brachypodium distachyon (Stiff brome) 1.0 | 1:3836684-3836760 | . | 255 | 0.73 | AAGAUUUUAGGAACGGAGGGA | miR5175 | siRNA21 | ShortStack |
| bdi-b1.0r1-1027 | Brachypodium distachyon (Stiff brome) 1.0 | 1:4444400-4444569 | + | 213 | 0.61 | ACGAACUCUUGGGCACGGUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-1056 | Brachypodium distachyon (Stiff brome) 1.0 | 1:4514059-4514228 | + | 1,395 | 3.99 | UGAGCCUGAGAUGGACCUGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-1164 | Brachypodium distachyon (Stiff brome) 1.0 | 1:4817520-4817689 | . | 848 | 2.42 | CGAUGGCGUUGGACGAUCCGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-1170 | Brachypodium distachyon (Stiff brome) 1.0 | 1:4831201-4831542 | . | 477 | 1.36 | UUCUGUGAGCGUGAGACACCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-1246 | Brachypodium distachyon (Stiff brome) 1.0 | 1:5189653-5189829 | + | 595 | 1.70 | ACGACAAGUAUUUGGGAACGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-1375 | Brachypodium distachyon (Stiff brome) 1.0 | 1:5767239-5767402 | - | 650 | 1.86 | GCCAUCUGAAUGCGCAGCCGGAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-2009 | Brachypodium distachyon (Stiff brome) 1.0 | 1:8350309-8350438 | + | 753 | 2.15 | UUAUUAUGGAUCCGAGGUAGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-2045 | Brachypodium distachyon (Stiff brome) 1.0 | 1:8553038-8553450 | + | 1,648 | 4.71 | UAAGAACUGAACGAGGAGACC | | siRNA21 | ShortStack |
| bdi-b1.0r1-2202 | Brachypodium distachyon (Stiff brome) 1.0 | 1:9206222-9206520 | . | 1,284 | 3.67 | UUUAUUUCGGAAAUUUACAGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-2300 | Brachypodium distachyon (Stiff brome) 1.0 | 1:9609339-9609359 | - | 23 | 0.07 | UUGUUGACAUGAAGAAGCAUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-2369 | Brachypodium distachyon (Stiff brome) 1.0 | 1:9806487-9806542 | . | 702 | 2.01 | UUCUGUCUGGAUGCUUAGAGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-2439 | Brachypodium distachyon (Stiff brome) 1.0 | 1:10055045-10055208 | + | 652 | 1.86 | UUUCGUAAAUCAAUAGGGUUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-2496 | Brachypodium distachyon (Stiff brome) 1.0 | 1:10257780-10257873 | + | 796 | 2.27 | UCCUCUGCGUGCAUGCUGGUG | | siRNA21 | ShortStack |
| bdi-b1.0r1-2611 | Brachypodium distachyon (Stiff brome) 1.0 | 1:10757919-10758064 | . | 783 | 2.24 | UUAUUAUGGAUCGGAAGGAAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-2806 | Brachypodium distachyon (Stiff brome) 1.0 | 1:11504832-11505264 | . | 850 | 2.43 | UCCGAACACUUAGACGAGACU | | siRNA21 | ShortStack |
| bdi-b1.0r1-3001 | Brachypodium distachyon (Stiff brome) 1.0 | 1:12213334-12213400 | + | 338 | 0.97 | ACUACUUAUGCUGCUUUGGUG | | siRNA21 | ShortStack |
| bdi-b1.0r1-3269 | Brachypodium distachyon (Stiff brome) 1.0 | 1:13180050-13180153 | + | 246 | 0.70 | AUACUGAUUAGCGUCGGCUAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-3281 | Brachypodium distachyon (Stiff brome) 1.0 | 1:13335638-13335742 | + | 4,304 | 12.29 | CAAGAAUUUAGGAACGAAGGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-3467 | Brachypodium distachyon (Stiff brome) 1.0 | 1:14200759-14200793 | - | 474 | 1.35 | UUAUCUGUGUCCAACUCUACA | | siRNA21 | ShortStack |
| bdi-MIR9491-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:14711883-14711980 | + | 354 | 1.01 | UGGUAUGUUACCUCUGAUCAG | miR9491 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-3582 | Brachypodium distachyon (Stiff brome) 1.0 | 1:14711889-14711961 | + | 340 | 0.97 | UGGUAUGUUACCUCUGAUCAG | miR9491 | siRNA21 | ShortStack |
| bdi-MIR5175a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:15325058-15325194 | . | 637 | 1.82 | GUAAGAAUUUAGGAACAGAAG | miR5175 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-3732 | Brachypodium distachyon (Stiff brome) 1.0 | 1:15325085-15325169 | . | 631 | 1.80 | GUAAGAAUUUAGGAACAGAAG | miR5175 | siRNA21 | ShortStack |
| bdi-b1.0r1-3824 | Brachypodium distachyon (Stiff brome) 1.0 | 1:15734669-15734790 | + | 595 | 1.70 | UUAAGAAGUUUGACUGAGGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-4494 | Brachypodium distachyon (Stiff brome) 1.0 | 1:18618604-18618761 | + | 1,070 | 3.06 | ACUGUGUCCUGCUAGAAGAGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-4495 | Brachypodium distachyon (Stiff brome) 1.0 | 1:18618859-18619008 | + | 790 | 2.26 | CCGACGGCUGGAGCGUCGACG | | siRNA21 | ShortStack |
| bdi-b1.0r1-4727 | Brachypodium distachyon (Stiff brome) 1.0 | 1:19572737-19573141 | - | 15,152 | 43.28 | UUUCGAGAUCGAACUUUGACC | | siRNA21 | ShortStack |
| bdi-b1.0r1-4769 | Brachypodium distachyon (Stiff brome) 1.0 | 1:19756088-19756479 | - | 1,088 | 3.11 | UCAACAAUUGGGGAUCUGGUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-5452 | Brachypodium distachyon (Stiff brome) 1.0 | 1:22135856-22136166 | - | 2,182 | 6.23 | UCUCGUAUAUGCGGAUGUACC | miR5173 | siRNA21 | ShortStack |
| bdi-b1.0r1-5889 | Brachypodium distachyon (Stiff brome) 1.0 | 1:23942752-23943276 | + | 2,321 | 6.63 | UUUGGACUAAAGUGACACGGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-6081 | Brachypodium distachyon (Stiff brome) 1.0 | 1:24778597-24778638 | - | 472 | 1.35 | UCGGAUCAAGAACGUGCGGUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-6088 | Brachypodium distachyon (Stiff brome) 1.0 | 1:24815554-24815703 | - | 1,598 | 4.57 | UAAAACAGUCUUAUGGGCAUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-6336 | Brachypodium distachyon (Stiff brome) 1.0 | 1:25813474-25813585 | . | 156 | 0.45 | GUUGAUCUGGCUACGAUACGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-6483 | Brachypodium distachyon (Stiff brome) 1.0 | 1:26531519-26531755 | - | 966 | 2.76 | GUAGAAAUUUAUGGUCAAAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-6664 | Brachypodium distachyon (Stiff brome) 1.0 | 1:27295125-27295397 | - | 3,643 | 10.41 | GAUGAAACUGAACAUUGCUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-6840 | Brachypodium distachyon (Stiff brome) 1.0 | 1:27943052-27943502 | . | 710 | 2.03 | UCGACUGAACCAACAGAUGCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-6928 | Brachypodium distachyon (Stiff brome) 1.0 | 1:28227453-28227473 | + | 109 | 0.31 | CAAGCACAUGGAAGAUCUCGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-7062 | Brachypodium distachyon (Stiff brome) 1.0 | 1:28655532-28655590 | - | 1,642 | 4.69 | GACGGAGCUGUGGCAGACUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-7132 | Brachypodium distachyon (Stiff brome) 1.0 | 1:28904072-28904309 | . | 4,668 | 13.33 | UAACAUAAGUUUGAACUCACG | miR5202 | siRNA21 | ShortStack |
| bdi-MIR5202-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:28904144-28904243 | . | 4,637 | 13.25 | UAACAUAAGUUUGAACUCACG | miR5202 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-7290 | Brachypodium distachyon (Stiff brome) 1.0 | 1:29587923-29588047 | - | 772 | 2.21 | CAUUCGGUUGAACUAAGGAGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-7291 | Brachypodium distachyon (Stiff brome) 1.0 | 1:29590167-29590189 | - | 363 | 1.04 | UGAGAAUAUUCUUUAUCUGUU | miR5339 | siRNA21 | ShortStack |
| bdi-b1.0r1-7343 | Brachypodium distachyon (Stiff brome) 1.0 | 1:29829313-29829960 | . | 1,367 | 3.91 | UUUGUUGAGAGACGAGAAGCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-7831 | Brachypodium distachyon (Stiff brome) 1.0 | 1:31894660-31894899 | + | 1,128 | 3.22 | CCGACGUGACGGACGUGUGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-7905 | Brachypodium distachyon (Stiff brome) 1.0 | 1:32217159-32217297 | . | 5,684 | 16.24 | UUUGAGAAUUGACCUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-8127 | Brachypodium distachyon (Stiff brome) 1.0 | 1:33031488-33032430 | . | 4,947 | 14.13 | UUUUUUCUGUAAGACUGCAAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-8486 | Brachypodium distachyon (Stiff brome) 1.0 | 1:34228201-34228292 | . | 329 | 0.94 | CCCAUAUGCUUGGGGACUGUA | | siRNA21 | ShortStack |
| bdi-MIR9498-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:38422189-38422246 | + | 60 | 0.17 | GACCGUCAAGUGGUUGUUGAG | miR9498 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-9139 | Brachypodium distachyon (Stiff brome) 1.0 | 1:38422709-38422824 | + | 10,260 | 29.31 | UCUGAGCAAGUUUUGAGUGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-9636 | Brachypodium distachyon (Stiff brome) 1.0 | 1:40875682-40875955 | + | 631 | 1.80 | UUCGUUUCUGAGGCUGACAGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-9692 | Brachypodium distachyon (Stiff brome) 1.0 | 1:41162644-41162708 | + | 212 | 0.61 | UGACGAUGCGACUACAACCUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-9773 | Brachypodium distachyon (Stiff brome) 1.0 | 1:41538317-41538547 | . | 588 | 1.68 | UUAGGUGCUUUCGGCUUUGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-9991 | Brachypodium distachyon (Stiff brome) 1.0 | 1:42436534-42436822 | - | 625 | 1.79 | UGACCGCCGAGACGCCGUCUGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-9992 | Brachypodium distachyon (Stiff brome) 1.0 | 1:42437330-42437744 | - | 1,053 | 3.01 | CGGAAUCGACGGCCGCUGCAG | | siRNA21 | ShortStack |
| bdi-MIR5199-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:42791417-42791560 | - | 464 | 1.33 | CAUACGGUUGAUAGCACUUAG | miR5199 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-10280 | Brachypodium distachyon (Stiff brome) 1.0 | 1:43545155-43545497 | + | 1,458 | 4.17 | UAAUUCUUGUCGCUGUUGUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-10522 | Brachypodium distachyon (Stiff brome) 1.0 | 1:44311352-44311633 | + | 9,817 | 28.04 | CGAGGAGCUAGUAGAUCGGGA | miR5172 | siRNA21 | ShortStack |
| bdi-MIR5172-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:44311568-44311956 | + | 10,985 | 31.38 | CGAGGAGCUAGUAGAUCGGGA | miR5172 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-10523 | Brachypodium distachyon (Stiff brome) 1.0 | 1:44311814-44312000 | + | 1,233 | 3.52 | CUGAUCUACUAGCUCCUCGGC | miR5172 | siRNA21 | ShortStack |
| bdi-b1.0r1-10675 | Brachypodium distachyon (Stiff brome) 1.0 | 1:45062773-45063654 | + | 86,377 | 246.73 | CGGAUACUGCACGAAUACUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-10713 | Brachypodium distachyon (Stiff brome) 1.0 | 1:45202206-45202233 | + | 298 | 0.85 | UGACGAAGAUGGACUUAGGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-10912 | Brachypodium distachyon (Stiff brome) 1.0 | 1:45921265-45921557 | - | 1,088 | 3.11 | UAGACAACUAAUAUGGAUCGG | | siRNA21 | ShortStack |
| bdi-MIR7734-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:46850031-46850373 | - | 4,471 | 12.77 | GAACGUGACUGGGUUAACGCC | miR7734 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-11157 | Brachypodium distachyon (Stiff brome) 1.0 | 1:46850293-46850452 | - | 4,299 | 12.28 | GAACGUGACUGGGUUAACGCC | miR7734 | siRNA21 | ShortStack |
| bdi-b1.0r1-11190 | Brachypodium distachyon (Stiff brome) 1.0 | 1:46971207-46971344 | - | 239 | 0.68 | UUUGGACUAAAGUGACACGGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-11206 | Brachypodium distachyon (Stiff brome) 1.0 | 1:47045079-47045103 | + | 542 | 1.55 | AAGAUUUCGUCAAGACAAGGC | miR9497 | siRNA21 | ShortStack |
| bdi-b1.0r1-11322 | Brachypodium distachyon (Stiff brome) 1.0 | 1:47573553-47573878 | + | 2,067 | 5.90 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-11381 | Brachypodium distachyon (Stiff brome) 1.0 | 1:47803925-47804333 | . | 544 | 1.55 | CGUCGCCACCGGCCUGGCGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-11394 | Brachypodium distachyon (Stiff brome) 1.0 | 1:47848761-47848798 | - | 1,317 | 3.76 | UUGGAAAGUAAAACUGACGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-11447 | Brachypodium distachyon (Stiff brome) 1.0 | 1:48065746-48066734 | . | 3,720 | 10.63 | GUUUUGCUGUGUUGAAGGUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-11564 | Brachypodium distachyon (Stiff brome) 1.0 | 1:48603386-48603977 | + | 11,625 | 33.21 | AGGACCGGUGAAGGGGGCGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-11609 | Brachypodium distachyon (Stiff brome) 1.0 | 1:48772835-48772897 | - | 558 | 1.59 | UCAAGAGCCGGAGUAGAUGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-11631 | Brachypodium distachyon (Stiff brome) 1.0 | 1:48821775-48821832 | + | 302 | 0.86 | GCUCGAUGACGGCUGCCUCCC | | siRNA21 | ShortStack |
| bdi-b1.0r1-12017 | Brachypodium distachyon (Stiff brome) 1.0 | 1:50158015-50158250 | + | 793 | 2.27 | UUAAUCGGAGUAGUGCGUGCC | | siRNA21 | ShortStack |
| bdi-b1.0r1-12019 | Brachypodium distachyon (Stiff brome) 1.0 | 1:50160208-50160269 | + | 176 | 0.50 | CUUUCAUGGGUGAUGUUGGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-12025 | Brachypodium distachyon (Stiff brome) 1.0 | 1:50166726-50166852 | . | 705 | 2.01 | GGGACUGCUGUUAGCGUGGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-12027 | Brachypodium distachyon (Stiff brome) 1.0 | 1:50170368-50170472 | . | 440 | 1.26 | CAAGCAGAGAAUGUAGGUCGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-12039 | Brachypodium distachyon (Stiff brome) 1.0 | 1:50205002-50205064 | + | 150 | 0.43 | CGUGGCUGUGGACGAGGAGGA | | siRNA21 | ShortStack |
| bdi-MIR5185e-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:50946307-50946421 | . | 27 | 0.08 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-12638 | Brachypodium distachyon (Stiff brome) 1.0 | 1:52780825-52780892 | + | 1,488 | 4.25 | AAGAUUGACUUAGGACAAAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-12952 | Brachypodium distachyon (Stiff brome) 1.0 | 1:53827042-53827424 | - | 614 | 1.75 | GCAAUGUAAUCUAGCAGAAAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-12956 | Brachypodium distachyon (Stiff brome) 1.0 | 1:53831411-53831518 | . | 301 | 0.86 | CAUUUAUUAUGGAUCGGAGGU | miR5181 | siRNA21 | ShortStack |
| bdi-b1.0r1-13055 | Brachypodium distachyon (Stiff brome) 1.0 | 1:54175522-54175648 | + | 260 | 0.74 | UGGAACACGUAUAAGCGAGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-13056 | Brachypodium distachyon (Stiff brome) 1.0 | 1:54176649-54176769 | . | 205 | 0.59 | UCUGGAACACAUAUAAGCAAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-13194 | Brachypodium distachyon (Stiff brome) 1.0 | 1:54845621-54846280 | . | 12,280 | 35.08 | CAAGUUGACUGUCACGCUGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-13292 | Brachypodium distachyon (Stiff brome) 1.0 | 1:55146595-55147202 | + | 23,011 | 65.73 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-13478 | Brachypodium distachyon (Stiff brome) 1.0 | 1:55906027-55906047 | - | 580 | 1.66 | AUGCGAACUAGUAGGUGCGAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-13482 | Brachypodium distachyon (Stiff brome) 1.0 | 1:55919594-55919725 | + | 524 | 1.50 | AAAGAAUGUAAGGUCUCGGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-13492 | Brachypodium distachyon (Stiff brome) 1.0 | 1:55954564-55954773 | + | 475 | 1.36 | AGGAGCAGCAGAGCAACGGCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-13559 | Brachypodium distachyon (Stiff brome) 1.0 | 1:56166364-56166384 | . | 112 | 0.32 | AGGUUUAGUGAACUCAAUGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-13688 | Brachypodium distachyon (Stiff brome) 1.0 | 1:56741558-56741664 | - | 464 | 1.33 | AAACAGACUAGAGCAGCCCAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-13689 | Brachypodium distachyon (Stiff brome) 1.0 | 1:56748302-56748430 | . | 253 | 0.72 | CGGCUGAUGUCCUGCGCGGUG | | siRNA21 | ShortStack |
| bdi-MIR5170-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:56853936-56854310 | - | 1,930 | 5.51 | UUACGAUCAUUGAACUUGUCG | miR5170 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-13709 | Brachypodium distachyon (Stiff brome) 1.0 | 1:56853966-56854142 | - | 697 | 1.99 | UCAUCAAGUUGAGUGACCGUA | miR5170 | siRNA21 | ShortStack |
| bdi-b1.0r1-13710 | Brachypodium distachyon (Stiff brome) 1.0 | 1:56854208-56854330 | - | 1,231 | 3.52 | UUACGAUCAUUGAACUUGUCG | miR5170 | siRNA21 | ShortStack |
| bdi-b1.0r1-13721 | Brachypodium distachyon (Stiff brome) 1.0 | 1:56888496-56888617 | . | 162 | 0.46 | UAUGUUGGAAUUACGGAUUAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-13905 | Brachypodium distachyon (Stiff brome) 1.0 | 1:57609760-57610104 | - | 3,054 | 8.72 | GAUGAAACUGAACAUUGCUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-13908 | Brachypodium distachyon (Stiff brome) 1.0 | 1:57646244-57646374 | . | 676 | 1.93 | CAACUAAAGAGUGUUGGAGGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-13957 | Brachypodium distachyon (Stiff brome) 1.0 | 1:57935203-57935287 | - | 470 | 1.34 | UCUGCGACAAGUAAUAGGGGU | miR5049 | siRNA21 | ShortStack |
| bdi-b1.0r1-14340 | Brachypodium distachyon (Stiff brome) 1.0 | 1:59722749-59723147 | + | 1,665 | 4.76 | UGAUGAUCUUGGAACACGUGC | miR5182 | siRNA21 | ShortStack |
| bdi-b1.0r1-14491 | Brachypodium distachyon (Stiff brome) 1.0 | 1:60201345-60201377 | + | 436 | 1.25 | AUUUGGUAGACAUGAGGAAGAAAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-14545 | Brachypodium distachyon (Stiff brome) 1.0 | 1:60368715-60368839 | + | 259 | 0.74 | CACUUAUUAUCGAUCGGAGGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-14594 | Brachypodium distachyon (Stiff brome) 1.0 | 1:60522581-60522659 | . | 571 | 1.63 | AGGGAGUAGAAGAUAAACCUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-14818 | Brachypodium distachyon (Stiff brome) 1.0 | 1:61301817-61302245 | . | 792 | 2.26 | AGAAGAUUGCCCAAAAAACUGUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-14835 | Brachypodium distachyon (Stiff brome) 1.0 | 1:61375674-61376157 | . | 2,512 | 7.18 | UUUAGCGCGUUUGACGGUAUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-15400 | Brachypodium distachyon (Stiff brome) 1.0 | 1:63365065-63365769 | + | 283,498 | 809.81 | AGGGCAAAGAACGCGAGUGAG | | siRNA21 | ShortStack |
| TAS3a_Bertolini2013 | Brachypodium distachyon (Stiff brome) 1.0 | 1:63365354-63365612 | + | 281,787 | 804.92 | AGGGCAAAGAACGCGAGUGAG | | siRNA21 | Bertolini_et_al_2013 |
| bdi-b1.0r1-15432 | Brachypodium distachyon (Stiff brome) 1.0 | 1:63480193-63480231 | - | 198 | 0.57 | UCGGUCAACGGAAACAAUAUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-15433 | Brachypodium distachyon (Stiff brome) 1.0 | 1:63480320-63480365 | . | 164 | 0.47 | UUGACCGAGCCUUUGACCAAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-15434 | Brachypodium distachyon (Stiff brome) 1.0 | 1:63488318-63488359 | - | 255 | 0.73 | UGACAUAGGACAAAGUUAGAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-15699 | Brachypodium distachyon (Stiff brome) 1.0 | 1:64465578-64466198 | . | 273 | 0.78 | UGAACGUUGCAGGCAUGGCAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-15784 | Brachypodium distachyon (Stiff brome) 1.0 | 1:64839587-64839774 | + | 254,899 | 728.11 | GGUAGUUCGACCGCGGAAUUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-15997 | Brachypodium distachyon (Stiff brome) 1.0 | 1:65552337-65553131 | - | 8,618 | 24.62 | UCUGACAAACACCAUCGCAAC | miR7777 | siRNA21 | ShortStack |
| bdi-MIR7777-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:65552800-65552950 | - | 5,604 | 16.01 | UCUGACAAACACCAUCGCAAC | miR7777 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-16234 | Brachypodium distachyon (Stiff brome) 1.0 | 1:66568743-66568765 | + | 707 | 2.02 | UCUGUUCCAAAAUGUAGGGCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-16292 | Brachypodium distachyon (Stiff brome) 1.0 | 1:66835826-66836298 | . | 5,007 | 14.30 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-MIR5185d-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 1:66835948-66836081 | + | 4,670 | 13.34 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-16333 | Brachypodium distachyon (Stiff brome) 1.0 | 1:66972510-66972696 | . | 1,610 | 4.60 | GGUGUUUUGUGGAACGGAGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-16789 | Brachypodium distachyon (Stiff brome) 1.0 | 1:69061235-69061275 | - | 365 | 1.04 | UAGGCGUACAUCUUAUGAACC | | siRNA21 | ShortStack |
| bdi-b1.0r1-16998 | Brachypodium distachyon (Stiff brome) 1.0 | 1:69937228-69937512 | . | 3,082 | 8.80 | AAUAAUCAAGGACUGUAUUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-17173 | Brachypodium distachyon (Stiff brome) 1.0 | 1:70676086-70676441 | . | 592 | 1.69 | GUAGAGUACAAUGAAGAAUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-17681 | Brachypodium distachyon (Stiff brome) 1.0 | 1:73170465-73170606 | + | 498 | 1.42 | GUUUUGCUGUGUUGAAGGUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-17810 | Brachypodium distachyon (Stiff brome) 1.0 | 1:73783188-73783283 | - | 771 | 2.20 | AGGAAUGAGAGAACAGCGUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-17959 | Brachypodium distachyon (Stiff brome) 1.0 | 1:74506098-74506210 | + | 913 | 2.61 | CCAUAAAGAUUUGCACGGCUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-18108 | Brachypodium distachyon (Stiff brome) 1.0 | 2:350612-350756 | . | 562 | 1.61 | ACACCUGCUCAGAAGUCGGAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-18114 | Brachypodium distachyon (Stiff brome) 1.0 | 2:363575-363771 | - | 342 | 0.98 | UUACGGUAGAGAAGGACUAAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-18121 | Brachypodium distachyon (Stiff brome) 1.0 | 2:379582-379660 | + | 153 | 0.44 | GCCGCUGGCGAACAGAGGAAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-18122 | Brachypodium distachyon (Stiff brome) 1.0 | 2:381065-381108 | + | 153 | 0.44 | UGGGAUGUGCAUUCAUGUCUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-18201 | Brachypodium distachyon (Stiff brome) 1.0 | 2:768810-769029 | + | 498 | 1.42 | AGGAACUUGGCGUCGGUGACGUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-18280 | Brachypodium distachyon (Stiff brome) 1.0 | 2:1091327-1091614 | + | 8,511,935 | 24,314.13 | UUUGGAUUGAAGGGAGCUCUG | miR159 | siRNA21 | ShortStack |
| bdi-b1.0r1-18451 | Brachypodium distachyon (Stiff brome) 1.0 | 2:1832431-1832661 | - | 1,155 | 3.30 | CUACGGAGAUGAAUGUCGCGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-18462 | Brachypodium distachyon (Stiff brome) 1.0 | 2:1862783-1862859 | . | 141 | 0.40 | CACCUUGCUCCUGACGGUCAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-18465 | Brachypodium distachyon (Stiff brome) 1.0 | 2:1870626-1870794 | . | 334 | 0.95 | CAAUCUGAACCACAGGGGCAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-18470 | Brachypodium distachyon (Stiff brome) 1.0 | 2:1878301-1878468 | + | 491 | 1.40 | GACGGAGAAGGCAUGAACCUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-18488 | Brachypodium distachyon (Stiff brome) 1.0 | 2:1948090-1948255 | . | 550 | 1.57 | UUAUUAUGGACCAGAGGGAGU | miR5181 | siRNA21 | ShortStack |
| bdi-b1.0r1-18525 | Brachypodium distachyon (Stiff brome) 1.0 | 2:2069042-2069211 | + | 588 | 1.68 | GAGCUGUGGCCGAGUGGAGCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-18527 | Brachypodium distachyon (Stiff brome) 1.0 | 2:2073556-2073869 | . | 576 | 1.65 | UUUGUGGACACUCGUAGGAGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-18542 | Brachypodium distachyon (Stiff brome) 1.0 | 2:2105053-2105180 | . | 125 | 0.36 | AAGGAUCAAUGUUUGGCGCCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-18543 | Brachypodium distachyon (Stiff brome) 1.0 | 2:2105366-2105390 | + | 210 | 0.60 | GCUCGGAUGGACGCGACGGUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-18756 | Brachypodium distachyon (Stiff brome) 1.0 | 2:3105540-3105967 | + | 4,818 | 13.76 | UAUGGAAAAAACAAAUUGAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-19092 | Brachypodium distachyon (Stiff brome) 1.0 | 2:4504205-4505803 | + | 33,063 | 94.44 | UGGGACAAAACCCUGAAUGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-19206 | Brachypodium distachyon (Stiff brome) 1.0 | 2:4931554-4931641 | - | 316 | 0.90 | UGACAGGGGAGAACUGCACUG | | siRNA21 | ShortStack |
| bdi-b1.0r1-19235 | Brachypodium distachyon (Stiff brome) 1.0 | 2:5062000-5062021 | + | 184 | 0.53 | UGGGUUCGGGAUUUGGAGGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-19382 | Brachypodium distachyon (Stiff brome) 1.0 | 2:5592323-5592564 | - | 21,726 | 62.06 | UUGGACUGAAGGGUGCUCCCU | miR319 | siRNA21 | ShortStack |
| bdi-b1.0r1-20012 | Brachypodium distachyon (Stiff brome) 1.0 | 2:7993226-7994653 | + | 13,809 | 39.45 | CUGGGCUACAACCAGGACUUGGAG | | siRNA21 | ShortStack |
| bdi-MIR7770-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:7993933-7994056 | + | 2,605 | 7.44 | UCUAGACGGGCCUUCAAAGAG | miR7770 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-20128 | Brachypodium distachyon (Stiff brome) 1.0 | 2:8406609-8406921 | . | 561 | 1.60 | UCGUCGACAAGAACCGGCAAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-20129 | Brachypodium distachyon (Stiff brome) 1.0 | 2:8408920-8408940 | + | 213 | 0.61 | AAGGCACUGCCAGAGCGCGCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-20329 | Brachypodium distachyon (Stiff brome) 1.0 | 2:9199809-9202341 | + | 11,450 | 32.71 | AUGAACCAGUUAAGGAGGCGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-20330 | Brachypodium distachyon (Stiff brome) 1.0 | 2:9203194-9203714 | + | 7,981 | 22.80 | UUAUGACGUGUAGGAGUUGCA | miR9485 | siRNA21 | ShortStack |
| bdi-b1.0r1-20679 | Brachypodium distachyon (Stiff brome) 1.0 | 2:10420504-10420807 | - | 2,206 | 6.30 | AGUCCGGGCUGAAGCUGACG | | siRNA21 | ShortStack |
| bdi-b1.0r1-20680 | Brachypodium distachyon (Stiff brome) 1.0 | 2:10420905-10421145 | - | 782 | 2.23 | CGAUUUUCUCACGGGCUUUCU | | siRNA21 | ShortStack |
| bdi-MIR408-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:10450366-10450510 | + | 26,893 | 76.82 | ACAGGGAUGGAGCAGAGCAUG | miR408 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-20687 | Brachypodium distachyon (Stiff brome) 1.0 | 2:10450367-10450505 | + | 26,893 | 76.82 | ACAGGGAUGGAGCAGAGCAUG | miR408 | siRNA21 | ShortStack |
| bdi-b1.0r1-20883 | Brachypodium distachyon (Stiff brome) 1.0 | 2:11219141-11219250 | + | 435 | 1.24 | AAGAAUUUAGGGACGGAGGGA | miR5175 | siRNA21 | ShortStack |
| bdi-b1.0r1-20995 | Brachypodium distachyon (Stiff brome) 1.0 | 2:11534778-11534950 | + | 687 | 1.96 | GUGUGCAUAUGUUUAAGAGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-22168 | Brachypodium distachyon (Stiff brome) 1.0 | 2:16691127-16691268 | . | 281 | 0.80 | UAGUUGUCUGUCAUGCAUGCA | | siRNA21 | ShortStack |
| bdi-MIR399c-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:16765663-16765802 | . | 9 | 0.03 | UGCCAAAGGAGAAUUGCCCUG | miR399 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-22475 | Brachypodium distachyon (Stiff brome) 1.0 | 2:17730151-17730323 | - | 1,053 | 3.01 | UUUUAGGACUUGCGGUGCAUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-22538 | Brachypodium distachyon (Stiff brome) 1.0 | 2:18042950-18043010 | - | 1,620 | 4.63 | GAUUCGGACCGUGGACGGCAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-22910 | Brachypodium distachyon (Stiff brome) 1.0 | 2:19579226-19579315 | + | 267 | 0.76 | UGCCUUGACUGGCCAAGCUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-22911 | Brachypodium distachyon (Stiff brome) 1.0 | 2:19579842-19579930 | + | 280 | 0.80 | AGCUUGGCUGGUCAAGGCUCC | | siRNA21 | ShortStack |
| bdi-b1.0r1-23001 | Brachypodium distachyon (Stiff brome) 1.0 | 2:19925542-19925842 | - | 2,877 | 8.22 | UGUUUUGCUGUGUUGAAGAUG | | siRNA21 | ShortStack |
| bdi-b1.0r1-23002 | Brachypodium distachyon (Stiff brome) 1.0 | 2:19927253-19927391 | - | 914 | 2.61 | UGAGCGGGCUGCAUUUGGACA | | siRNA21 | ShortStack |
| bdi-b1.0r1-23448 | Brachypodium distachyon (Stiff brome) 1.0 | 2:21617972-21618177 | . | 417 | 1.19 | UUUAUGGAUCCGAGGGAGUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-23578 | Brachypodium distachyon (Stiff brome) 1.0 | 2:22133566-22133771 | . | 797 | 2.28 | AUUUGAGAAUUGAACUAGAAG | miR5185 | siRNA21 | ShortStack |
| bdi-MIR7755-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:22520134-22520346 | - | 1,289 | 3.68 | UCAAUUUACGGUGUAGAAUUG | miR7755 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-26069 | Brachypodium distachyon (Stiff brome) 1.0 | 2:34653811-34653849 | - | 293 | 0.84 | UCCAAGACGGCAGUUCAGAAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-26164 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35097075-35097199 | - | 1,088 | 3.11 | UCUCCACGGACGGUGAGUGCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-26165 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35097243-35097263 | + | 143 | 0.41 | GCAGUGGCGAGACUAACUGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-26255 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35437690-35437962 | . | 527 | 1.51 | UGGACCGAGCCGGCUCAUGUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-26256 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35441207-35441311 | . | 264 | 0.75 | AGGCGGAGCGGUAGCACGGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-26288 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35523455-35523561 | - | 658 | 1.88 | UGGGCCAGACUGAACUGGGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-26289 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35529337-35529509 | + | 253 | 0.72 | CGGAGAGCAACGGCGCACUGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-26301 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35570021-35570105 | + | 1,116 | 3.19 | CAGACGACAAAUGGGAGCCGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-26330 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35670955-35671017 | - | 157 | 0.45 | AUAGAACUGGAAAACUGGUGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-26426 | Brachypodium distachyon (Stiff brome) 1.0 | 2:35964968-35965416 | + | 1,740 | 4.97 | UUGCACUGAUGAGACUAACUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-26461 | Brachypodium distachyon (Stiff brome) 1.0 | 2:36125246-36125349 | . | 105 | 0.30 | UGAACGAUCCUGGACGAGCAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-26851 | Brachypodium distachyon (Stiff brome) 1.0 | 2:37640441-37640463 | - | 108 | 0.31 | UUCUUUAACUAUGACUUCCAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-27145 | Brachypodium distachyon (Stiff brome) 1.0 | 2:38830817-38831237 | - | 18,247 | 52.12 | UCAAGAACGUUAAUUCUGGCA | | siRNA21 | ShortStack |
| TAS3b_Bertolini2013 | Brachypodium distachyon (Stiff brome) 1.0 | 2:38830953-38831169 | - | 17,993 | 51.40 | UCAAGAACGUUAAUUCUGGCA | | siRNA21 | Bertolini_et_al_2013 |
| bdi-b1.0r1-27392 | Brachypodium distachyon (Stiff brome) 1.0 | 2:39888727-39889192 | - | 1,802 | 5.15 | GGUCAUGGCUGAAGCUGGCGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-27429 | Brachypodium distachyon (Stiff brome) 1.0 | 2:40044496-40044670 | . | 1,010 | 2.89 | GUUUUGCUGUGUUGAAGGUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-27702 | Brachypodium distachyon (Stiff brome) 1.0 | 2:41520767-41520867 | + | 244 | 0.70 | CGGGCCAUAGAGAUUGAGGGU | | siRNA21 | ShortStack |
| bdi-MIR5185a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:41735710-41735862 | + | 457 | 1.31 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-27769 | Brachypodium distachyon (Stiff brome) 1.0 | 2:41735789-41735965 | + | 533 | 1.52 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-27801 | Brachypodium distachyon (Stiff brome) 1.0 | 2:41909208-41909234 | + | 289 | 0.83 | ACAGAUCAGAUGAAAGGUGUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-27967 | Brachypodium distachyon (Stiff brome) 1.0 | 2:42461387-42461536 | - | 949 | 2.71 | CAGGGCGAGGCAAAUGAUCAA | miR5201 | siRNA21 | ShortStack |
| bdi-MIR5201-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:42461428-42461517 | - | 942 | 2.69 | CAGGGCGAGGCAAAUGAUCAA | miR5201 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-27969 | Brachypodium distachyon (Stiff brome) 1.0 | 2:42469306-42469387 | . | 2,631 | 7.52 | UCUGUUCCUAAUUGUAAGACG | miR6197 | siRNA21 | ShortStack |
| bdi-b1.0r1-28040 | Brachypodium distachyon (Stiff brome) 1.0 | 2:42741179-42741465 | . | 547 | 1.56 | CAGACACUUGUUAUGGAUCAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-28067 | Brachypodium distachyon (Stiff brome) 1.0 | 2:42827994-42828032 | - | 481 | 1.37 | UCGAGGCUACCAAGGGAAGAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-28367 | Brachypodium distachyon (Stiff brome) 1.0 | 2:44039262-44039293 | + | 154 | 0.44 | UUCCUGGACCGGCUUCUUCGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-28398 | Brachypodium distachyon (Stiff brome) 1.0 | 2:44164731-44165043 | + | 3,505 | 10.01 | UGAAUAUAUAAUAUAAUACGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-28399 | Brachypodium distachyon (Stiff brome) 1.0 | 2:44165122-44165411 | + | 8,255 | 23.58 | UAGUUGAGGGGGUUAUGUAGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-28411 | Brachypodium distachyon (Stiff brome) 1.0 | 2:44228353-44228456 | . | 972 | 2.78 | UCUGUUCCUAAAUGUAAGACG | miR6197 | siRNA21 | ShortStack |
| bdi-b1.0r1-28497 | Brachypodium distachyon (Stiff brome) 1.0 | 2:44538551-44538575 | + | 259 | 0.74 | AACACUGAUUAUCUCAUGCAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-28779 | Brachypodium distachyon (Stiff brome) 1.0 | 2:45628205-45628220 | . | 37 | 0.11 | UGCAUACUUGAGAAUAUUCUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-28901 | Brachypodium distachyon (Stiff brome) 1.0 | 2:46170681-46170925 | + | 1,445 | 4.13 | CUCCGAUCUGUAGUAAGUGUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-29176 | Brachypodium distachyon (Stiff brome) 1.0 | 2:47213326-47213372 | - | 316 | 0.90 | AGAUGCGCAUCAUGUUAGAACACG | miR5184 | siRNA21 | ShortStack |
| bdi-b1.0r1-29287 | Brachypodium distachyon (Stiff brome) 1.0 | 2:47694314-47694427 | + | 423 | 1.21 | UGUUAUGUGUGCAUUUUGUGA | | siRNA21 | ShortStack |
| bdi-MIR5181a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:48358975-48359115 | + | 314 | 0.90 | CGGCACUUAUUAUGGAUCAGA | miR5181 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-29454 | Brachypodium distachyon (Stiff brome) 1.0 | 2:48358996-48359088 | + | 309 | 0.88 | CGGCACUUAUUAUGGAUCAGA | miR5181 | siRNA21 | ShortStack |
| bdi-b1.0r1-29615 | Brachypodium distachyon (Stiff brome) 1.0 | 2:48993877-48994113 | - | 1,474 | 4.21 | CGACAAGAAUUUAGGGACGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-29996 | Brachypodium distachyon (Stiff brome) 1.0 | 2:50547212-50547246 | - | 806 | 2.30 | UCAAGUAGUUCAUUGCAAUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-30440 | Brachypodium distachyon (Stiff brome) 1.0 | 2:52498569-52499504 | - | 3,344 | 9.55 | GUAGCUGAUGUGACCGUCGAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-30442 | Brachypodium distachyon (Stiff brome) 1.0 | 2:52501001-52501115 | - | 8,180 | 23.37 | CGACGGUCACAUCGGGUACGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-30771 | Brachypodium distachyon (Stiff brome) 1.0 | 2:53836158-53836203 | + | 287 | 0.82 | AAUUAAUAUGGAACUGAGGGA | | siRNA21 | ShortStack |
| bdi-MIR7776-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:54086906-54087052 | - | 2,671 | 7.63 | UUGAUAAUGGGUUGAAUGCGC | miR7776 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-30862 | Brachypodium distachyon (Stiff brome) 1.0 | 2:54191550-54191800 | + | 3,044 | 8.70 | GGGGAUAAUAUUCUGAGAUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-31328 | Brachypodium distachyon (Stiff brome) 1.0 | 2:56464422-56464568 | . | 765 | 2.19 | UUUAUGGGACAGAGGAAGUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-31381 | Brachypodium distachyon (Stiff brome) 1.0 | 2:56692863-56693061 | . | 268 | 0.77 | UUUGCUGGACGGAGGAAGUAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-31507 | Brachypodium distachyon (Stiff brome) 1.0 | 2:57285643-57285841 | - | 444 | 1.27 | UGGACCUGGAGAGCAAGGAGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-31508 | Brachypodium distachyon (Stiff brome) 1.0 | 2:57287093-57287229 | - | 87 | 0.25 | UUGUUUGGAGACGCACGGGAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-31509 | Brachypodium distachyon (Stiff brome) 1.0 | 2:57287370-57287602 | . | 293 | 0.84 | AGCAAGGAGAUGGAGCCGGUG | | siRNA21 | ShortStack |
| bdi-b1.0r1-31592 | Brachypodium distachyon (Stiff brome) 1.0 | 2:57653456-57653731 | - | 972 | 2.78 | CGCAGACCGGAAGAUCAACGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-31614 | Brachypodium distachyon (Stiff brome) 1.0 | 2:57744964-57746116 | + | 710,090 | 2,028.35 | ACUGGUUGGAUCAUGCUUCUA | | siRNA21 | ShortStack |
| bdi-MIR7757-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 2:57745334-57745931 | + | 678,219 | 1,937.32 | ACUGGUUGGAUCAUGCUUCUA | | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-31881 | Brachypodium distachyon (Stiff brome) 1.0 | 2:58915779-58915808 | - | 3,541 | 10.12 | GGAAUCUUGAUGAUGCUGCAU | miR172 | siRNA21 | ShortStack |
| bdi-b1.0r1-32081 | Brachypodium distachyon (Stiff brome) 1.0 | 3:670652-671011 | + | 905 | 2.59 | CAGUGGUCACAGGACGCGCGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-32091 | Brachypodium distachyon (Stiff brome) 1.0 | 3:692011-692031 | + | 179 | 0.51 | AGGACCCUUGGUUGCAUGGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-32308 | Brachypodium distachyon (Stiff brome) 1.0 | 3:1704405-1704490 | + | 271 | 0.77 | AACUGUCGCUCGAAUGGAGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-32506 | Brachypodium distachyon (Stiff brome) 1.0 | 3:2605423-2607083 | . | 5,306 | 15.16 | AAAUGGAAAGAAUGCAUGGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-32631 | Brachypodium distachyon (Stiff brome) 1.0 | 3:3149716-3149804 | - | 4,633 | 13.23 | AUUGAGUGCAGCGUUGAUGAA | miR397 | siRNA21 | ShortStack |
| bdi-b1.0r1-32641 | Brachypodium distachyon (Stiff brome) 1.0 | 3:3177389-3177935 | - | 6,315 | 18.04 | AUUGAGUGCAGCGUUGAUGAA | miR397 | siRNA21 | ShortStack |
| bdi-b1.0r1-32680 | Brachypodium distachyon (Stiff brome) 1.0 | 3:3324093-3324214 | . | 531 | 1.52 | UUUGGUUGAACUUAAGGAGGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-32706 | Brachypodium distachyon (Stiff brome) 1.0 | 3:3414605-3414629 | - | 373 | 1.07 | GCGUGCAAGGAGCCAAGCAUG | miR160 | siRNA21 | ShortStack |
| bdi-b1.0r1-32784 | Brachypodium distachyon (Stiff brome) 1.0 | 3:3632430-3632459 | . | 884 | 2.53 | AGAUCAUGUUGCAGCUUCACU | miR167 | siRNA21 | ShortStack |
| bdi-MIR7740-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:3759281-3759403 | + | 3,027 | 8.65 | AGAGGUUGUUCGGAUGAAGAAUGC | miR7740 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-32869 | Brachypodium distachyon (Stiff brome) 1.0 | 3:3932034-3932123 | . | 154 | 0.44 | CGACACUUUGUAUGGAUCAGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-33004 | Brachypodium distachyon (Stiff brome) 1.0 | 3:4507666-4508173 | - | 3,768 | 10.76 | UUGGAACAAGCAAUCAGGUGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-33046 | Brachypodium distachyon (Stiff brome) 1.0 | 3:4666788-4667158 | - | 6,740 | 19.25 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-33106 | Brachypodium distachyon (Stiff brome) 1.0 | 3:4915190-4915253 | + | 165 | 0.47 | CUAAUUGGAUACUGACACAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-33190 | Brachypodium distachyon (Stiff brome) 1.0 | 3:5201210-5201237 | - | 314 | 0.90 | AUCUUGACCCGUCGAUUCUUG | | siRNA21 | ShortStack |
| bdi-b1.0r1-33473 | Brachypodium distachyon (Stiff brome) 1.0 | 3:6298016-6298043 | + | 502 | 1.43 | UUCCUUAACCGGUCCUGUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-33651 | Brachypodium distachyon (Stiff brome) 1.0 | 3:6984566-6984613 | + | 691 | 1.97 | AAACUGUUGUGACAUGGGUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-34118 | Brachypodium distachyon (Stiff brome) 1.0 | 3:8463605-8463726 | - | 1,654 | 4.73 | UCUGACCGGUGGGCCUGAGCG | miR5178 | siRNA21 | ShortStack |
| bdi-MIR5178-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:8463664-8463877 | - | 2,620 | 7.48 | UCUGACCGGUGGGCCUGAGCG | miR5178 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-34119 | Brachypodium distachyon (Stiff brome) 1.0 | 3:8463817-8463923 | - | 993 | 2.84 | CGCCGGUCAGAGCCAUGUGGC | miR5178 | siRNA21 | ShortStack |
| bdi-b1.0r1-34333 | Brachypodium distachyon (Stiff brome) 1.0 | 3:9320885-9321703 | . | 2,825 | 8.07 | UUGAAUGAGACUGACAAGAAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-34366 | Brachypodium distachyon (Stiff brome) 1.0 | 3:9493463-9493485 | - | 2,599 | 7.42 | UUUUGCUCAAGACCGCGCAAC | miR5179 | siRNA21 | ShortStack |
| bdi-b1.0r1-34557 | Brachypodium distachyon (Stiff brome) 1.0 | 3:10925479-10925569 | . | 361 | 1.03 | UGAGACACUUGUCAUGGAUCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-34698 | Brachypodium distachyon (Stiff brome) 1.0 | 3:11894409-11894627 | + | 940 | 2.69 | UUGGAUCAAAAACACACGGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-34999 | Brachypodium distachyon (Stiff brome) 1.0 | 3:13220949-13221221 | . | 373 | 1.07 | GGAAGAACUCGGCAGGUUCGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-35158 | Brachypodium distachyon (Stiff brome) 1.0 | 3:13877107-13877274 | - | 236 | 0.67 | UGCACUGUAGCAUCGAAGGAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-35233 | Brachypodium distachyon (Stiff brome) 1.0 | 3:14135918-14136281 | . | 5,228 | 14.93 | AUUUGAGAAUUGAACUAGAAG | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-35408 | Brachypodium distachyon (Stiff brome) 1.0 | 3:14762926-14764454 | - | 16,015 | 45.75 | AAGUGUUUGGGGAACUCUAGG | miR395 | siRNA21 | ShortStack |
| bdi-b1.0r1-35673 | Brachypodium distachyon (Stiff brome) 1.0 | 3:15794516-15794559 | - | 110 | 0.31 | CUUCUGUAUAUAGCUGACGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-35712 | Brachypodium distachyon (Stiff brome) 1.0 | 3:15914888-15914916 | . | 44 | 0.13 | UACGGCACGCUUCUCGGGCAA | | siRNA21 | ShortStack |
| bdi-MIR169f-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:16738806-16738956 | + | 3,992 | 11.40 | CAGCCAAGGAUGACUUGCCGG | miR169 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-36165 | Brachypodium distachyon (Stiff brome) 1.0 | 3:17558916-17559568 | . | 4,030 | 11.51 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-36258 | Brachypodium distachyon (Stiff brome) 1.0 | 3:17873325-17873441 | - | 190 | 0.54 | UAGACUUCGCUGCCAAUUGAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-36259 | Brachypodium distachyon (Stiff brome) 1.0 | 3:17873554-17873728 | - | 467 | 1.33 | UUUGGUCUCUCAAUUGGCAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-36341 | Brachypodium distachyon (Stiff brome) 1.0 | 3:18233078-18233192 | + | 1,849 | 5.28 | GUAAACUUGGCAAGCGGGAAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-36391 | Brachypodium distachyon (Stiff brome) 1.0 | 3:18440272-18440504 | - | 887 | 2.53 | CUGGUGGCCCCGGGUUGUCGG | | siRNA21 | ShortStack |
| bdi-MIR5174f-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:18576851-18576934 | . | 144 | 0.41 | CCUCCGUUUCAUAAAGGUUGG | miR5174 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-36472 | Brachypodium distachyon (Stiff brome) 1.0 | 3:18723520-18725587 | - | 17,050 | 48.70 | UAAAGUAUGACUAGGCACACG | miR7709 | siRNA21 | ShortStack |
| bdi-MIR7709-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:18724294-18724682 | - | 5,059 | 14.45 | UAAAGUAUGACUAGGCACACG | miR7709 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-36574 | Brachypodium distachyon (Stiff brome) 1.0 | 3:19086700-19086852 | - | 405 | 1.16 | GUGAAACUGACUGGUUGGGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-36629 | Brachypodium distachyon (Stiff brome) 1.0 | 3:19305991-19306799 | . | 1,122,286 | 3,205.78 | UGGACCUGUCAGAAGAAGGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-36649 | Brachypodium distachyon (Stiff brome) 1.0 | 3:19439253-19439450 | - | 1,938 | 5.54 | AUCGGAGGUAGUACAAAAUAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-36838 | Brachypodium distachyon (Stiff brome) 1.0 | 3:20127273-20127318 | + | 384 | 1.10 | CGACAAGAAUGAUGGAACGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-36839 | Brachypodium distachyon (Stiff brome) 1.0 | 3:20130499-20130532 | + | 770 | 2.20 | UACUGACAUUAUCUUCUGCAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-36888 | Brachypodium distachyon (Stiff brome) 1.0 | 3:20335014-20335368 | + | 894 | 2.55 | AGAAGCUAGGGGAGGACAGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-37070 | Brachypodium distachyon (Stiff brome) 1.0 | 3:21068912-21068948 | + | 294 | 0.84 | CCUGAACCGGCCAAUUUGGAUG | | siRNA21 | ShortStack |
| bdi-b1.0r1-37236 | Brachypodium distachyon (Stiff brome) 1.0 | 3:21783020-21783074 | + | 486 | 1.39 | UUAGGACAAAGCUAGGACUUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-37338 | Brachypodium distachyon (Stiff brome) 1.0 | 3:22153074-22153271 | . | 763 | 2.18 | UUGAUAGAAUUAGGACUCACU | | siRNA21 | ShortStack |
| bdi-b1.0r1-37432 | Brachypodium distachyon (Stiff brome) 1.0 | 3:22608301-22608393 | - | 2,074 | 5.92 | AUUUGAAAAAUGAACUAGAAG | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-37459 | Brachypodium distachyon (Stiff brome) 1.0 | 3:22735430-22735986 | - | 50,551 | 144.40 | UUCUCUCGGCUAAGGAACUGC | miR7754 | siRNA21 | ShortStack |
| bdi-b1.0r1-37980 | Brachypodium distachyon (Stiff brome) 1.0 | 3:26858303-26858439 | . | 200 | 0.57 | AGCCUCUGACUGCCACGCUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-38202 | Brachypodium distachyon (Stiff brome) 1.0 | 3:28054248-28054464 | . | 389 | 1.11 | UCAAGUUGAGUGACCGUAAGU | miR5170 | siRNA21 | ShortStack |
| bdi-b1.0r1-38239 | Brachypodium distachyon (Stiff brome) 1.0 | 3:28201608-28202184 | - | 10,967 | 31.33 | ACGGACUGCUACUCGAUUUUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-38422 | Brachypodium distachyon (Stiff brome) 1.0 | 3:28813810-28813832 | + | 155 | 0.44 | CUGGUCAGCAGCGGCUCGGUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-38450 | Brachypodium distachyon (Stiff brome) 1.0 | 3:28894689-28894951 | + | 506 | 1.45 | UUAGAUCUCAAAUAAACGGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-38776 | Brachypodium distachyon (Stiff brome) 1.0 | 3:30008522-30008652 | . | 608 | 1.74 | AGGACCCACUGUCGGGCCAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-38927 | Brachypodium distachyon (Stiff brome) 1.0 | 3:30805285-30805305 | + | 78 | 0.22 | CGAGCCCCACGGUGGGCGCCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-39012 | Brachypodium distachyon (Stiff brome) 1.0 | 3:31146512-31147169 | - | 1,667 | 4.76 | UUUUGGGGAAUUCCAGAUGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-39602 | Brachypodium distachyon (Stiff brome) 1.0 | 3:33794923-33795251 | . | 1,089 | 3.11 | GUCAUCUCGGUCGGCUGGGGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-40229 | Brachypodium distachyon (Stiff brome) 1.0 | 3:36228262-36228430 | . | 153 | 0.44 | CACUGUGGCAUGAUCAGCGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-40300 | Brachypodium distachyon (Stiff brome) 1.0 | 3:36497265-36497490 | + | 1,902 | 5.43 | UCAAAGAUGGGAUUUCUGAAC | miR7715 | siRNA21 | ShortStack |
| bdi-MIR7715-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:36497308-36497435 | + | 1,864 | 5.32 | UCAAAGAUGGGAUUUCUGAAC | miR7715 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-40482 | Brachypodium distachyon (Stiff brome) 1.0 | 3:37224595-37224765 | - | 596 | 1.70 | UCGGAGCUUUGUCUAGAUACG | | siRNA21 | ShortStack |
| bdi-b1.0r1-40496 | Brachypodium distachyon (Stiff brome) 1.0 | 3:37270390-37271024 | - | 7,480 | 21.37 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-40857 | Brachypodium distachyon (Stiff brome) 1.0 | 3:38601705-38601823 | - | 168 | 0.48 | CGACCCCUACCUGGCGCGCCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-40919 | Brachypodium distachyon (Stiff brome) 1.0 | 3:38887746-38887785 | + | 193 | 0.55 | AGGCAGUAAACUAGAGGCAGC | | siRNA21 | ShortStack |
| bdi-MIR444a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:38888780-38888843 | + | 221 | 0.63 | UGCAGUUGCUGCCUCAAGCUU | miR444 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-41488 | Brachypodium distachyon (Stiff brome) 1.0 | 3:41045751-41045775 | . | 306 | 0.87 | UGGUUUUGUAGUUCAGGGUUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-41817 | Brachypodium distachyon (Stiff brome) 1.0 | 3:42260472-42260492 | + | 748 | 2.14 | UUGACAGAAGAGAGAGAGCAC | miR156 | siRNA21 | ShortStack |
| bdi-b1.0r1-41898 | Brachypodium distachyon (Stiff brome) 1.0 | 3:42612689-42612788 | + | 986 | 2.82 | CGACAAGAACUUAGGAACGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-41939 | Brachypodium distachyon (Stiff brome) 1.0 | 3:42862037-42862360 | - | 728 | 2.08 | CAUAGCUUUGGACGUUGCGGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-42315 | Brachypodium distachyon (Stiff brome) 1.0 | 3:44673280-44674357 | - | 3,409 | 9.74 | UACUUUGUCUUUGUGUAGAUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-42392 | Brachypodium distachyon (Stiff brome) 1.0 | 3:44959197-44959384 | - | 3,971 | 11.34 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-MIR5185f-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:44959226-44959335 | - | 3,966 | 11.33 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-42512 | Brachypodium distachyon (Stiff brome) 1.0 | 3:45511500-45511522 | + | 563 | 1.61 | UCUGUUCCAAAAUGUAGGGCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-42723 | Brachypodium distachyon (Stiff brome) 1.0 | 3:46455394-46455959 | . | 1,557 | 4.45 | UGAUGUGGCAUAGCUCAACUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-42811 | Brachypodium distachyon (Stiff brome) 1.0 | 3:46793090-46793352 | . | 1,145 | 3.27 | AGAAAUUGCAAAUAGGCCCAGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-42820 | Brachypodium distachyon (Stiff brome) 1.0 | 3:46807641-46808044 | + | 593 | 1.69 | UAAUUUUAGGACUAACUUGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-43211 | Brachypodium distachyon (Stiff brome) 1.0 | 3:48190399-48190492 | - | 612 | 1.75 | ACAAGUAAUUCUGGACGGAGG | miR1127 | siRNA21 | ShortStack |
| bdi-MIR444c-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:48666800-48666875 | - | 43,927 | 125.48 | UGUUGUCUCAAGCUUGCUGCC | miR444 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-43346 | Brachypodium distachyon (Stiff brome) 1.0 | 3:48666808-48666879 | - | 43,927 | 125.48 | UGUUGUCUCAAGCUUGCUGCC | miR444 | siRNA21 | ShortStack |
| bdi-b1.0r1-43348 | Brachypodium distachyon (Stiff brome) 1.0 | 3:48671109-48671362 | - | 16,815 | 48.03 | UGGUGACAAACUUGAGGCAGC | miR444 | siRNA21 | ShortStack |
| bdi-MIR5281b-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:48737185-48737430 | . | 183 | 0.52 | UCUUAUAAAUAGGAACGGAGG | miR5281 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-43412 | Brachypodium distachyon (Stiff brome) 1.0 | 3:48936149-48936169 | - | 88 | 0.25 | CCAAGUGACUGAUUUCCGGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-43479 | Brachypodium distachyon (Stiff brome) 1.0 | 3:49188851-49188872 | - | 269 | 0.77 | AGGUGACAACAGUAACCUGCC | | siRNA21 | ShortStack |
| bdi-b1.0r1-43659 | Brachypodium distachyon (Stiff brome) 1.0 | 3:49902700-49903302 | . | 298,356 | 852.25 | AGUGGAUGGCAGAAGGAAGAU | | siRNA21 | ShortStack |
| TAS3c_Bertolini2013 | Brachypodium distachyon (Stiff brome) 1.0 | 3:49902979-49903237 | . | 293,743 | 839.07 | AGUGGAUGGCAGAAGGAAGAU | | siRNA21 | Bertolini_et_al_2013 |
| bdi-b1.0r1-43868 | Brachypodium distachyon (Stiff brome) 1.0 | 3:50776510-50776682 | - | 393 | 1.12 | UAUCUGAGAUUUAAUGGCUAGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-44139 | Brachypodium distachyon (Stiff brome) 1.0 | 3:51800014-51800147 | . | 624 | 1.78 | AGUUAAUUUGGCACGUAGGGA | | siRNA21 | ShortStack |
| bdi-MIR171a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:52059037-52059156 | - | 141 | 0.40 | UGAUUGAGCCGCGCCAAUAUC | miR171 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-44263 | Brachypodium distachyon (Stiff brome) 1.0 | 3:52292767-52292913 | - | 443 | 1.27 | UACACGUCAGCAAGGAAGCCC | | siRNA21 | ShortStack |
| bdi-b1.0r1-44316 | Brachypodium distachyon (Stiff brome) 1.0 | 3:52549370-52550097 | . | 7,256 | 20.73 | UUUGGACUAAAGUGACACGGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-44469 | Brachypodium distachyon (Stiff brome) 1.0 | 3:53190599-53190624 | + | 891 | 2.55 | UUCCUUGACCUGAUUUCCCAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-44735 | Brachypodium distachyon (Stiff brome) 1.0 | 3:54373580-54373931 | . | 878 | 2.51 | UUUUGUCUAUGUGGCACGUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-45208 | Brachypodium distachyon (Stiff brome) 1.0 | 3:56362405-56362435 | + | 790 | 2.26 | UUCCUUGACUAGUAGCUGCAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-45289 | Brachypodium distachyon (Stiff brome) 1.0 | 3:56701578-56701766 | + | 7,703 | 22.00 | GGCGACAACUGCAUUACUUGC | miR444 | siRNA21 | ShortStack |
| bdi-MIR444b-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:56701604-56701706 | + | 7,686 | 21.96 | GGCGACAACUGCAUUACUUGC | miR444 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-45290 | Brachypodium distachyon (Stiff brome) 1.0 | 3:56702484-56702587 | . | 234 | 0.67 | UUUAUUUCGGAAAUUUACAGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-45291 | Brachypodium distachyon (Stiff brome) 1.0 | 3:56704141-56704553 | + | 19,390 | 55.39 | UGCAGUUGCUGCCUCAAGCUU | miR444 | siRNA21 | ShortStack |
| bdi-MIR5180a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:56704432-56704571 | . | 172 | 0.49 | CGACACUUAUUUUGGAUCAGAGGU | miR5180 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-45337 | Brachypodium distachyon (Stiff brome) 1.0 | 3:56937729-56938170 | - | 612 | 1.75 | GAGGAGUAGUAGGACGGCGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-45421 | Brachypodium distachyon (Stiff brome) 1.0 | 3:57267267-57267364 | . | 179 | 0.51 | AUUUGAGAAUUGAACUAGAAG | miR5185 | siRNA21 | ShortStack |
| bdi-MIR164c-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 3:59107074-59107211 | - | 11,396 | 32.55 | UGCUGGAGAAGCAGGGCACGU | miR164 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-45755 | Brachypodium distachyon (Stiff brome) 1.0 | 3:59107104-59107183 | - | 11,394 | 32.55 | UGCUGGAGAAGCAGGGCACGU | miR164 | siRNA21 | ShortStack |
| bdi-b1.0r1-45768 | Brachypodium distachyon (Stiff brome) 1.0 | 3:59147820-59148095 | + | 765 | 2.19 | CUUAUUAUGGAUCUGAGGGAG | miR5181 | siRNA21 | ShortStack |
| bdi-b1.0r1-46019 | Brachypodium distachyon (Stiff brome) 1.0 | 4:493423-493696 | + | 6,758 | 19.30 | UCGAAUCUAGAAGACGAGGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-46020 | Brachypodium distachyon (Stiff brome) 1.0 | 4:494263-494629 | . | 2,632 | 7.52 | UCGAAUCUAGAAGACGAGGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-46059 | Brachypodium distachyon (Stiff brome) 1.0 | 4:615629-615731 | . | 204 | 0.58 | ACCACAUGUCGGUUGCCGGAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-46062 | Brachypodium distachyon (Stiff brome) 1.0 | 4:625726-625746 | - | 804 | 2.30 | UGCGGAGUAUAAGGCAGCUGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-46172 | Brachypodium distachyon (Stiff brome) 1.0 | 4:1069116-1069201 | + | 464 | 1.33 | UCUAAAUACUUGUAGUGGUUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-46342 | Brachypodium distachyon (Stiff brome) 1.0 | 4:1805392-1805483 | - | 1,058 | 3.02 | CUUAUUUUGGGACAGAGUGAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-46436 | Brachypodium distachyon (Stiff brome) 1.0 | 4:2096210-2096483 | . | 1,881 | 5.37 | AGGGUCAAUGGGUACUCUGAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-46521 | Brachypodium distachyon (Stiff brome) 1.0 | 4:2459368-2459723 | . | 1,020 | 2.91 | UUGAGGGCCGAAAAUAUACUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-46551 | Brachypodium distachyon (Stiff brome) 1.0 | 4:2599015-2599217 | . | 601 | 1.72 | UGGACGAAGGCACCAAUCAUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-46552 | Brachypodium distachyon (Stiff brome) 1.0 | 4:2600825-2600948 | . | 403 | 1.15 | AGAAAACUUGUAUCUCGGCAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-46556 | Brachypodium distachyon (Stiff brome) 1.0 | 4:2611760-2612097 | . | 1,054 | 3.01 | CUGUGGCCAUAGCAUCUGCGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-46570 | Brachypodium distachyon (Stiff brome) 1.0 | 4:2637251-2637397 | + | 765 | 2.19 | UGAGACUGAGAGACGAGCUAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-46575 | Brachypodium distachyon (Stiff brome) 1.0 | 4:2644110-2644130 | + | 214 | 0.61 | CCUGAACCAUCGGAUGGCUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-46999 | Brachypodium distachyon (Stiff brome) 1.0 | 4:4284026-4284067 | + | 653 | 1.87 | CCAGGGGAUAGGAACGCCUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-47074 | Brachypodium distachyon (Stiff brome) 1.0 | 4:4499461-4499542 | + | 788 | 2.25 | UGGACCGGAUGGCUUUGGUUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-47088 | Brachypodium distachyon (Stiff brome) 1.0 | 4:4551039-4551080 | - | 98 | 0.28 | UGGAGCUCUUCGGCAAGGCUU | | siRNA21 | ShortStack |
| bdi-MIR7764-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:5125732-5125842 | + | 786 | 2.25 | AAAUAGAUCUUGGCGUUAUGGG | miR7764 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-47226 | Brachypodium distachyon (Stiff brome) 1.0 | 4:5126967-5127071 | + | 544 | 1.55 | AUCUGAAUCAUUGCCGACCAUGCA | miR7750 | siRNA21 | ShortStack |
| bdi-b1.0r1-47309 | Brachypodium distachyon (Stiff brome) 1.0 | 4:5383444-5383519 | - | 769 | 2.20 | CAGGCACGAGAAUGUCGCUCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-47548 | Brachypodium distachyon (Stiff brome) 1.0 | 4:6308010-6308294 | - | 975 | 2.79 | ACUUAAUUUGGGACGGAGGGA | miR1862 | siRNA21 | ShortStack |
| bdi-b1.0r1-47558 | Brachypodium distachyon (Stiff brome) 1.0 | 4:6344661-6344832 | + | 515 | 1.47 | UCAGAUGAAAGGUGGAAGCUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-47640 | Brachypodium distachyon (Stiff brome) 1.0 | 4:6593824-6594122 | + | 1,235 | 3.53 | UUAGGACAAAAGCAAAUGCAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-47894 | Brachypodium distachyon (Stiff brome) 1.0 | 4:7498317-7498557 | - | 2,546 | 7.27 | UCUAAUGGCUGAAAUGGGAAG | | siRNA21 | ShortStack |
| bdi-MIR9486a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:7498369-7498481 | - | 1,286 | 3.67 | UGCUUUCAAGGGAUUAGAGGU | miR9486 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-48350 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9596018-9596701 | . | 1,324 | 3.78 | CUAAUUCAGAAGGCUUGUGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-48351 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9596750-9598065 | . | 4,241 | 12.11 | UGGAAGAGCUCGGAU | miR7767 | siRNA21 | ShortStack |
| bdi-b1.0r1-48360 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9644264-9644340 | - | 219 | 0.63 | UCAAGACUGUAUCGGAUUUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-48361 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9645330-9645823 | . | 1,019 | 2.91 | UGAGUCCGAGCUGAAUUCGAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-48362 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9646478-9646525 | - | 258 | 0.74 | AAGGGAACUGUAUGCGCAGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-48392 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9773813-9774942 | . | 25,107 | 71.72 | ACGACAGCUUGGACAGGAGGC | miR7767 | siRNA21 | ShortStack |
| bdi-b1.0r1-48393 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9775182-9775707 | . | 1,108 | 3.17 | CUGUCUACUGAACAAACAGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-48394 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9776538-9776920 | . | 925 | 2.64 | UCAAGACUGUAUCGGAUUUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-48396 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9781916-9782201 | . | 381 | 1.09 | AAGGAUUGUCUACUAGUAGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-48397 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9784044-9784262 | . | 160 | 0.46 | UUCAGAAGAAGAUGUUGGACACA | | siRNA21 | ShortStack |
| bdi-b1.0r1-48398 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9784347-9784688 | + | 275 | 0.79 | ACGACAGCUUGGACAGGAGGC | miR7767 | siRNA21 | ShortStack |
| bdi-b1.0r1-48407 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9814406-9814772 | . | 225 | 0.64 | CUUGCAGUCUAUGAGCUUCAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-48411 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9825202-9825311 | + | 398 | 1.14 | UGAAUUCGAGGUGGAGACUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-48412 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9834368-9834659 | . | 482 | 1.38 | ACUUGAAACGUUGGUCAUCGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-48413 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9834706-9835176 | . | 745 | 2.13 | AAGGGAACUGUAUGCGCAGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-48414 | Brachypodium distachyon (Stiff brome) 1.0 | 4:9835508-9835541 | + | 281 | 0.80 | CUAAUUCAGAAGGCUUGUGGA | | siRNA21 | ShortStack |
| bdi-MIR5185g-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:10669865-10669986 | + | 470 | 1.34 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-48629 | Brachypodium distachyon (Stiff brome) 1.0 | 4:10669877-10670050 | + | 491 | 1.40 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-48717 | Brachypodium distachyon (Stiff brome) 1.0 | 4:10944791-10944874 | + | 684 | 1.95 | CAUGAGACGGAUGAUGCUCAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-48794 | Brachypodium distachyon (Stiff brome) 1.0 | 4:11227575-11227784 | . | 883 | 2.52 | UGCGGCAGAAGCUGAAUUGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-49137 | Brachypodium distachyon (Stiff brome) 1.0 | 4:12469873-12470103 | + | 360 | 1.03 | CCCAGAUUCGUUCGGACAUAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-49156 | Brachypodium distachyon (Stiff brome) 1.0 | 4:12548197-12548387 | . | 77 | 0.22 | CACCAACUGUGGCCGCCGGUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-49165 | Brachypodium distachyon (Stiff brome) 1.0 | 4:12572192-12572330 | . | 749 | 2.14 | ACGGAUUGACUCAUAGCCGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-49169 | Brachypodium distachyon (Stiff brome) 1.0 | 4:12581826-12582234 | . | 790 | 2.26 | AAAUCACCUCGAUGAUCGUCC | | siRNA21 | ShortStack |
| bdi-b1.0r1-49300 | Brachypodium distachyon (Stiff brome) 1.0 | 4:13102305-13102566 | . | 1,526 | 4.36 | UUUGGACUAAAGUGACACGGU | | siRNA21 | ShortStack |
| bdi-MIR5166-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:14440355-14440694 | + | 275 | 0.79 | GAUCGGACCCUGGUGUGCAGC | miR5166 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-49677 | Brachypodium distachyon (Stiff brome) 1.0 | 4:14440556-14440641 | + | 218 | 0.62 | GAUCGGACCCUGGUGUGCAGC | miR5166 | siRNA21 | ShortStack |
| bdi-b1.0r1-50318 | Brachypodium distachyon (Stiff brome) 1.0 | 4:17239252-17239710 | + | 1,819 | 5.20 | CUUAUUAUGGAUCUGAGGGAG | miR5181 | siRNA21 | ShortStack |
| bdi-b1.0r1-50360 | Brachypodium distachyon (Stiff brome) 1.0 | 4:17354600-17354721 | + | 309 | 0.88 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-50847 | Brachypodium distachyon (Stiff brome) 1.0 | 4:20045077-20045112 | - | 333 | 0.95 | CACUCAGAACUCAAGAAGAUA | | siRNA21 | ShortStack |
| bdi-MIR7736-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:22303221-22303379 | - | 2,359 | 6.74 | UGACAUAUCUGAUGGUAAAGG | miR7736 | siRNA21 | miRBase21-BestBlastHit |
| bdi-MIR5164-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:22543862-22544027 | . | 55 | 0.16 | CGCAACUUUGUCUAGAUACGC | miR5164 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-51589 | Brachypodium distachyon (Stiff brome) 1.0 | 4:24046066-24046156 | + | 495 | 1.41 | UGUGGCUCAGAUUAGAGGUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-51753 | Brachypodium distachyon (Stiff brome) 1.0 | 4:24932661-24932762 | - | 965 | 2.76 | CAAGACAAGACUUUGACCAAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-52003 | Brachypodium distachyon (Stiff brome) 1.0 | 4:26012754-26012972 | - | 670 | 1.91 | UUGGAUUGGAAUGAACGGCAGAUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-52240 | Brachypodium distachyon (Stiff brome) 1.0 | 4:27229902-27230554 | - | 33,797 | 96.54 | CACGUCGGAUUCGGCAAGGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-52395 | Brachypodium distachyon (Stiff brome) 1.0 | 4:27862926-27863197 | - | 301 | 0.86 | GUAGAUGUUUAAUGGAGUUGC | | siRNA21 | ShortStack |
| bdi-MIR5185h-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:28275129-28275253 | . | 79 | 0.23 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-52705 | Brachypodium distachyon (Stiff brome) 1.0 | 4:29119531-29119637 | . | 361 | 1.03 | CCGGCUGUUGAGUUACCGGCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-52710 | Brachypodium distachyon (Stiff brome) 1.0 | 4:29127673-29127901 | . | 541 | 1.55 | GGAGAACUCGGAAAAGCUGAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-52711 | Brachypodium distachyon (Stiff brome) 1.0 | 4:29127988-29128008 | + | 379 | 1.08 | AAUUGUGACCUUGAUGAGCAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-52845 | Brachypodium distachyon (Stiff brome) 1.0 | 4:29611494-29611673 | . | 308 | 0.88 | GUGUGCAUAUGUUUAAGAGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-52899 | Brachypodium distachyon (Stiff brome) 1.0 | 4:29823307-29823369 | . | 754 | 2.15 | CACGACCGGAGAUGGACCCAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-53142 | Brachypodium distachyon (Stiff brome) 1.0 | 4:31011268-31012196 | - | 4,109 | 11.74 | UAUGUGAGGGUGGUAACUGAA | miR9480 | siRNA21 | ShortStack |
| bdi-MIR9480a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:31011548-31011617 | - | 3,266 | 9.33 | UAUGUGAGGGUGGUAACUGAA | miR9480 | siRNA21 | miRBase21-BestBlastHit |
| bdi-MIR319a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:31253293-31253572 | + | 3,753 | 10.72 | UGGACUGAAGGGAGCUCCCUC | miR319 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-53204 | Brachypodium distachyon (Stiff brome) 1.0 | 4:31253326-31253580 | + | 3,755 | 10.73 | UGGACUGAAGGGAGCUCCCUC | miR319 | siRNA21 | ShortStack |
| bdi-b1.0r1-53438 | Brachypodium distachyon (Stiff brome) 1.0 | 4:32311215-32311304 | . | 813 | 2.32 | UAGAGAAAGCGGCAAAACUCC | | siRNA21 | ShortStack |
| bdi-b1.0r1-53577 | Brachypodium distachyon (Stiff brome) 1.0 | 4:32812311-32812385 | + | 577 | 1.65 | UUCUGAUUUCCUGAACAGCAG | | siRNA21 | ShortStack |
| bdi-MIR5165-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:33186148-33186396 | - | 5,438 | 15.53 | AUAUGGUGGGAAUUCAUGGUA | miR5165 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-53927 | Brachypodium distachyon (Stiff brome) 1.0 | 4:34273992-34274036 | . | 80 | 0.23 | UUUGACCGAGUUUAUAGAAAA | miR437 | siRNA21 | ShortStack |
| bdi-b1.0r1-54148 | Brachypodium distachyon (Stiff brome) 1.0 | 4:35052873-35053095 | + | 985 | 2.81 | ACUUCCACCUUUGAUCCGAGC | | siRNA21 | ShortStack |
| bdi-MIR5185i-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:35293520-35293620 | . | 601 | 1.72 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-54305 | Brachypodium distachyon (Stiff brome) 1.0 | 4:35655861-35656005 | + | 1,039 | 2.97 | ACUGAUUAUGGAUCGGACGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-54370 | Brachypodium distachyon (Stiff brome) 1.0 | 4:35908805-35908931 | . | 204 | 0.58 | UUCUGUGAGAAAAUUAGCGUC | | siRNA21 | ShortStack |
| bdi-b1.0r1-55059 | Brachypodium distachyon (Stiff brome) 1.0 | 4:38376411-38376452 | - | 265 | 0.76 | CAUUUGUUUGAACUAAAGAGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-55160 | Brachypodium distachyon (Stiff brome) 1.0 | 4:38782998-38783538 | - | 5,674 | 16.21 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-55167 | Brachypodium distachyon (Stiff brome) 1.0 | 4:38808984-38809285 | - | 2,856 | 8.16 | UCGUGUCCAAGGUAGAACGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-55168 | Brachypodium distachyon (Stiff brome) 1.0 | 4:38809511-38809573 | - | 351 | 1.00 | UUCAUCGGAAAGGCCAUGUUC | | siRNA21 | ShortStack |
| bdi-MIR156a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:39473438-39473584 | + | 792 | 2.26 | UUGACAGAAGAGAGAGAGCAC | miR156 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-55323 | Brachypodium distachyon (Stiff brome) 1.0 | 4:39473537-39473557 | + | 790 | 2.26 | UUGACAGAAGAGAGAGAGCAC | miR156 | siRNA21 | ShortStack |
| bdi-b1.0r1-55589 | Brachypodium distachyon (Stiff brome) 1.0 | 4:40510798-40511079 | + | 1,273 | 3.64 | CAUUCGGUUGAACUAAGGAGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-55620 | Brachypodium distachyon (Stiff brome) 1.0 | 4:40670085-40670354 | . | 981 | 2.80 | AGGGACCAUUUGCGUACUUUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-55646 | Brachypodium distachyon (Stiff brome) 1.0 | 4:40822771-40824098 | . | 15,084 | 43.09 | UUUGGACUAAAGUGACACGGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-55784 | Brachypodium distachyon (Stiff brome) 1.0 | 4:41287804-41288366 | . | 15,696 | 44.84 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-55829 | Brachypodium distachyon (Stiff brome) 1.0 | 4:41477822-41477932 | - | 500 | 1.43 | UUCCUUGACAGGCAAAUGCAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-55920 | Brachypodium distachyon (Stiff brome) 1.0 | 4:41880217-41880334 | - | 1,149 | 3.28 | GCAAGUCAGGGGCUGAAACCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-55994 | Brachypodium distachyon (Stiff brome) 1.0 | 4:42126729-42126857 | - | 2,729 | 7.80 | GUGAAUUACCUUAACUAGAGC | miR5167 | siRNA21 | ShortStack |
| bdi-MIR5167a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 4:42126781-42127074 | - | 4,298 | 12.28 | GUGAAUUACCUUAACUAGAGC | miR5167 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-56014 | Brachypodium distachyon (Stiff brome) 1.0 | 4:42198106-42198351 | - | 787 | 2.25 | UGAAGCCGAACUCCUCGUUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-56154 | Brachypodium distachyon (Stiff brome) 1.0 | 4:42678184-42678598 | - | 1,976 | 5.64 | GGAGACGGUUUAACAUCUGCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-56254 | Brachypodium distachyon (Stiff brome) 1.0 | 4:43081503-43081958 | . | 823 | 2.35 | UGUUGAGGAGCCGCAGGACGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-56358 | Brachypodium distachyon (Stiff brome) 1.0 | 4:43435943-43436343 | - | 5,377 | 15.36 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-56482 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44028879-44029144 | . | 627 | 1.79 | CCCGUGUCCGGACAACUGGCU | | siRNA21 | ShortStack |
| bdi-b1.0r1-56484 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44032281-44032301 | + | 93 | 0.27 | CACUGUACUCUUGAUGGCCUU | | siRNA21 | ShortStack |
| bdi-b1.0r1-56485 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44032844-44032864 | + | 372 | 1.06 | CAGGUCAGACUUGGUUGGGCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-56489 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44043210-44043482 | - | 412 | 1.18 | UUGGUCAAGCCUGGGGAGUCA | | siRNA21 | ShortStack |
| bdi-b1.0r1-56543 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44195264-44195547 | . | 507 | 1.45 | AGCUGGAAGGCUCGAGCUGAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-56641 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44591514-44591547 | + | 260 | 0.74 | AAGAUUGACUUAGGACAAAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-56686 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44830743-44830986 | + | 1,945 | 5.56 | UGACAGUAGCUAGAGCCGCAU | | siRNA21 | ShortStack |
| bdi-b1.0r1-56694 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44845519-44845539 | - | 181 | 0.52 | GCGUACAGGGAACUCGCGGCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-56702 | Brachypodium distachyon (Stiff brome) 1.0 | 4:44865185-44865352 | + | 745 | 2.13 | UUCUGGAUGAGUGUAUUCGGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-56996 | Brachypodium distachyon (Stiff brome) 1.0 | 4:46015852-46016250 | + | 1,460 | 4.17 | CGAGAGGAACUGUGACGAUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-57044 | Brachypodium distachyon (Stiff brome) 1.0 | 4:46131928-46131957 | + | 817 | 2.33 | AUCCUUAACUCGAAAUACAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-57096 | Brachypodium distachyon (Stiff brome) 1.0 | 4:46384767-46385306 | - | 3,774 | 10.78 | UUUCUGAGGACGACAAGUGGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-57196 | Brachypodium distachyon (Stiff brome) 1.0 | 4:46786285-46786356 | + | 3,407 | 9.73 | ACCGGAUGCGUGAGCCGUUCG | | siRNA21 | ShortStack |
| bdi-b1.0r1-57298 | Brachypodium distachyon (Stiff brome) 1.0 | 4:47204040-47204205 | - | 573 | 1.64 | CAUUUGUUUGAACUGAGUAGG | miR5070 | siRNA21 | ShortStack |
| bdi-b1.0r1-57968 | Brachypodium distachyon (Stiff brome) 1.0 | 5:1447409-1447543 | - | 14,765 | 42.18 | CCCGGUCGAGGACGGCCCCGC | miR7768 | siRNA21 | ShortStack |
| bdi-MIR7768a-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 5:1447437-1447542 | - | 14,763 | 42.17 | CCCGGUCGAGGACGGCCCCGC | miR7768 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-58404 | Brachypodium distachyon (Stiff brome) 1.0 | 5:3376882-3377066 | . | 560 | 1.60 | AAGAUUUACUUUGACAAACAA | | siRNA21 | ShortStack |
| bdi-b1.0r1-58658 | Brachypodium distachyon (Stiff brome) 1.0 | 5:4465503-4465596 | + | 1,560 | 4.46 | GGUCCUAAAUUCUUGUUGUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-58822 | Brachypodium distachyon (Stiff brome) 1.0 | 5:5180503-5180654 | . | 426 | 1.22 | CUUGAGACGUCUUUUGUUGGA | | siRNA21 | ShortStack |
| bdi-b1.0r1-58997 | Brachypodium distachyon (Stiff brome) 1.0 | 5:6094952-6095127 | + | 1,366 | 3.90 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-MIR5185b-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 5:6094953-6095105 | + | 1,364 | 3.90 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-59292 | Brachypodium distachyon (Stiff brome) 1.0 | 5:8732825-8732882 | + | 284 | 0.81 | UGGACGGUUUCAGGAGUUCAG | | siRNA21 | ShortStack |
| bdi-MIR5185j-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 5:9614368-9614468 | . | 242 | 0.69 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-59535 | Brachypodium distachyon (Stiff brome) 1.0 | 5:10206452-10206821 | . | 30,155 | 86.14 | UUGGAAUUGAAAUGAAACUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-59776 | Brachypodium distachyon (Stiff brome) 1.0 | 5:11251101-11251127 | - | 277 | 0.79 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-59977 | Brachypodium distachyon (Stiff brome) 1.0 | 5:12037335-12038200 | - | 4,896 | 13.99 | AUGACGUGACAUCUGAUUGGU | | siRNA21 | ShortStack |
| bdi-b1.0r1-59991 | Brachypodium distachyon (Stiff brome) 1.0 | 5:12095889-12096188 | - | 1,848 | 5.28 | UCUUGGGACAGAGAGAUCGAC | | siRNA21 | ShortStack |
| bdi-b1.0r1-60171 | Brachypodium distachyon (Stiff brome) 1.0 | 5:12825849-12826031 | + | 594 | 1.70 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-60878 | Brachypodium distachyon (Stiff brome) 1.0 | 5:15675724-15676103 | - | 4,922 | 14.06 | UUUGAAAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-60953 | Brachypodium distachyon (Stiff brome) 1.0 | 5:15919195-15919575 | . | 655 | 1.87 | UAAUAGGUGUCUUAGAUUUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-60954 | Brachypodium distachyon (Stiff brome) 1.0 | 5:15919880-15919986 | - | 44,626 | 127.47 | UGUUGUCUCAAGCUUGCUGCC | miR444 | siRNA21 | ShortStack |
| bdi-MIR444d-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 5:15919916-15919986 | - | 44,620 | 127.46 | UGUUGUCUCAAGCUUGCUGCC | miR444 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-60955 | Brachypodium distachyon (Stiff brome) 1.0 | 5:15922424-15922478 | - | 43,933 | 125.49 | CGGCAAGCUAGAGGCAGCAAC | miR444 | siRNA21 | ShortStack |
| bdi-b1.0r1-61009 | Brachypodium distachyon (Stiff brome) 1.0 | 5:16109691-16109862 | - | 2,632 | 7.52 | UUUGAAAAUUGAACAAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-61198 | Brachypodium distachyon (Stiff brome) 1.0 | 5:16939922-16940003 | - | 1,020 | 2.91 | CGAACAGACUGUAUGAUCAGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-61396 | Brachypodium distachyon (Stiff brome) 1.0 | 5:17699945-17700267 | - | 5,225 | 14.93 | CCUUAUCUGUGUCCAACUCUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-61486 | Brachypodium distachyon (Stiff brome) 1.0 | 5:18040076-18040148 | - | 463 | 1.32 | UGAGAAUCUUGGAACACGUGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-61491 | Brachypodium distachyon (Stiff brome) 1.0 | 5:18059548-18060217 | . | 46,339 | 132.37 | UGAGAGGGUUGGUACGGACGA | | siRNA21 | ShortStack |
| TAS3d_Bertolini2013 | Brachypodium distachyon (Stiff brome) 1.0 | 5:18059819-18060034 | . | 45,935 | 131.21 | UGAGAGGGUUGGUACGGACGA | | siRNA21 | Bertolini_et_al_2013 |
| bdi-b1.0r1-62099 | Brachypodium distachyon (Stiff brome) 1.0 | 5:20527138-20527197 | - | 403 | 1.15 | UUUGACCAAGUUUGUAGAACA | miR5169 | siRNA21 | ShortStack |
| bdi-MIR5169b-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 5:20527327-20527532 | - | 3,482 | 9.95 | UUUGACCAAGUUUGUAGAACA | miR5169 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-62100 | Brachypodium distachyon (Stiff brome) 1.0 | 5:20527333-20528162 | . | 6,206 | 17.73 | UUUGACCAAGUUUGUAGAACA | miR5169 | siRNA21 | ShortStack |
| bdi-b1.0r1-62282 | Brachypodium distachyon (Stiff brome) 1.0 | 5:21264992-21265107 | - | 5,733 | 16.38 | CCCGGUCGAGGACGGCCCCGC | miR7768 | siRNA21 | ShortStack |
| bdi-MIR7768b-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 5:21264994-21265108 | - | 5,733 | 16.38 | CCCGGUCGAGGACGGCCCCGC | miR7768 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-62488 | Brachypodium distachyon (Stiff brome) 1.0 | 5:22100313-22100740 | - | 1,499 | 4.28 | UGCUUCUUCGGCAAAUUGGUG | | siRNA21 | ShortStack |
| bdi-b1.0r1-62878 | Brachypodium distachyon (Stiff brome) 1.0 | 5:23763676-23764077 | - | 78,556 | 224.39 | CAGCCAAGGAUGACUUGCCGG | miR169 | siRNA21 | ShortStack |
| bdi-b1.0r1-62879 | Brachypodium distachyon (Stiff brome) 1.0 | 5:23781890-23782253 | + | 1,650 | 4.71 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-62883 | Brachypodium distachyon (Stiff brome) 1.0 | 5:23787137-23787460 | + | 6,875 | 19.64 | UUUGAAAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-b1.0r1-62904 | Brachypodium distachyon (Stiff brome) 1.0 | 5:23862974-23863223 | . | 389 | 1.11 | AUCUUUUGUUGGAUGGAGGUA | | siRNA21 | ShortStack |
| bdi-b1.0r1-63075 | Brachypodium distachyon (Stiff brome) 1.0 | 5:24584676-24584793 | + | 336 | 0.96 | GUUUUGCUGUGUUGAAGGUGG | | siRNA21 | ShortStack |
| bdi-b1.0r1-63159 | Brachypodium distachyon (Stiff brome) 1.0 | 5:24868287-24868435 | . | 2,626 | 7.50 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | ShortStack |
| bdi-MIR5185k-m1 | Brachypodium distachyon (Stiff brome) 1.0 | 5:24868302-24868411 | . | 2,626 | 7.50 | UUUGAGAAUUGAACUAGAAGC | miR5185 | siRNA21 | miRBase21-BestBlastHit |
| bdi-b1.0r1-63210 | Brachypodium distachyon (Stiff brome) 1.0 | 5:25112480-25112825 | - | 183 | 0.52 | AGCGGCUGGAUGCAGAGGACG | | siRNA21 | ShortStack |
| bdi-b1.0r1-63211 | Brachypodium distachyon (Stiff brome) 1.0 | 5:25113300-25113452 | - | 112 | 0.32 | UUCCCCUGUAGGAAUCUUGGC | | siRNA21 | ShortStack |
| bdi-b1.0r1-63723 | Brachypodium distachyon (Stiff brome) 1.0 | 5:27380800-27380907 | - | 1,739 | 4.97 | UGCCUUAACUUGACAUGUAG | | siRNA21 | ShortStack |
| bdi-b1.0r1-63894 | Brachypodium distachyon (Stiff brome) 1.0 | 5:28182895-28182948 | + | 425 | 1.21 | UUCGAAUCCGGAUGAACGGAA | | siRNA21 | ShortStack |
Data from Lunardon et al. (2020)