Data from Lunardon et al. (2020)

Annotations viewer

Genome

Brachypodium distachyon (Stiff brome) genome build 1.0 (bdi-b1.0)

Version v1.0 of Brachypodium distachyon cv. Bd21 from Ensembl Plants

Locus type

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Annotation source

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Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
bdi-b1.0r1-45	Brachypodium distachyon (Stiff brome) 1.0	1:163505-163944	.	937	2.68	AGAAUCUUGAUGCUGCAU		OtherRNA	ShortStack
bdi-b1.0r1-54	Brachypodium distachyon (Stiff brome) 1.0	1:195418-195438	-	286	0.82	CCCACCGGGCGUGCCA		OtherRNA	ShortStack
bdi-b1.0r1-55	Brachypodium distachyon (Stiff brome) 1.0	1:195882-195897	+	350	1.00	CCCGGCGAUGGAACCA		OtherRNA	ShortStack
bdi-b1.0r1-111	Brachypodium distachyon (Stiff brome) 1.0	1:469031-469357	.	793	2.27	GGGGAUGUAGCACAAA		OtherRNA	ShortStack
bdi-b1.0r1-165	Brachypodium distachyon (Stiff brome) 1.0	1:777999-778724	-	4,534	12.95	AGGGAAAUAGAACUCGCCAACGGC		OtherRNA	ShortStack
bdi-b1.0r1-166	Brachypodium distachyon (Stiff brome) 1.0	1:781500-781549	.	253	0.72	ACGAAAGAUUUGAAC		OtherRNA	ShortStack
bdi-b1.0r1-173	Brachypodium distachyon (Stiff brome) 1.0	1:792411-792461	-	68	0.19	UUUGGACAAGAAGAUAUAUUAAAU		OtherRNA	ShortStack
bdi-b1.0r1-174	Brachypodium distachyon (Stiff brome) 1.0	1:792529-792561	+	35	0.10	UGUGUUUUUAUGUUAUUUUGUGAAGGA		OtherRNA	ShortStack
bdi-b1.0r1-177	Brachypodium distachyon (Stiff brome) 1.0	1:797556-797735	+	3,819	10.91	UUUGGAUUGAAGGGAUA		OtherRNA	ShortStack
bdi-b1.0r1-190	Brachypodium distachyon (Stiff brome) 1.0	1:838028-838073	+	135	0.39	AUAAGCUGCCGGUUGGUCUGGUG		OtherRNA	ShortStack
bdi-b1.0r1-208	Brachypodium distachyon (Stiff brome) 1.0	1:985837-985855	-	1,050	3.00	UGGAGUCGGCGGAAA		OtherRNA	ShortStack
bdi-b1.0r1-249	Brachypodium distachyon (Stiff brome) 1.0	1:1119501-1119825	+	1,018	2.91	AUACGACAGUAUGAACACGAUACC		OtherRNA	ShortStack
bdi-b1.0r1-255	Brachypodium distachyon (Stiff brome) 1.0	1:1152762-1152781	+	246	0.70	UCAGGAAGAACGUGA		OtherRNA	ShortStack
bdi-b1.0r1-276	Brachypodium distachyon (Stiff brome) 1.0	1:1247147-1247238	+	19,684	56.23	GUCUGGGUGGUGUAGUUGGUUAUC		OtherRNA	ShortStack
bdi-b1.0r1-292	Brachypodium distachyon (Stiff brome) 1.0	1:1308941-1309019	-	1,031	2.95	CGGUUCGAACCCGGUUGGGCCCUCCA		OtherRNA	ShortStack
bdi-b1.0r1-307	Brachypodium distachyon (Stiff brome) 1.0	1:1367872-1368105	-	386	1.10	UUACUAAGAACAGGGCAUGUAAG		OtherRNA	ShortStack
bdi-b1.0r1-323	Brachypodium distachyon (Stiff brome) 1.0	1:1436118-1436233	+	1,848	5.28	GUGGUCGUGCCGGAG		OtherRNA	ShortStack
bdi-b1.0r1-336	Brachypodium distachyon (Stiff brome) 1.0	1:1506569-1506663	+	9,341	26.68	GUCGAUAUGUCCGAGUGGUUAAGG		OtherRNA	ShortStack
bdi-b1.0r1-340	Brachypodium distachyon (Stiff brome) 1.0	1:1530750-1530852	+	1,521	4.35	GGUUUCGUGGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-341	Brachypodium distachyon (Stiff brome) 1.0	1:1534517-1534633	-	118	0.34	GGUAACAAGAUCGGCUGCUAAG		OtherRNA	ShortStack
bdi-b1.0r1-342	Brachypodium distachyon (Stiff brome) 1.0	1:1535145-1535561	.	495	1.41	AGAGGAUCGCCUUCGUCGGGCUGC		OtherRNA	ShortStack
bdi-b1.0r1-362	Brachypodium distachyon (Stiff brome) 1.0	1:1632818-1632843	+	494	1.41	CUGAUAUCUGUAGUUCUA		OtherRNA	ShortStack
bdi-b1.0r1-364	Brachypodium distachyon (Stiff brome) 1.0	1:1656152-1656285	+	604	1.73	GGUUCCAUAGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-372	Brachypodium distachyon (Stiff brome) 1.0	1:1701733-1702085	-	440	1.26	UGUAGCAGUCGACGAUUGGUGGA		OtherRNA	ShortStack
bdi-b1.0r1-373	Brachypodium distachyon (Stiff brome) 1.0	1:1702273-1702580	-	259	0.74	AGACGAUCGGAAAGAUUGAGAGGC		OtherRNA	ShortStack
bdi-b1.0r1-374	Brachypodium distachyon (Stiff brome) 1.0	1:1702669-1702868	-	364	1.04	CAUCGGCUGUGGCUAUGAAGACA		OtherRNA	ShortStack
bdi-b1.0r1-375	Brachypodium distachyon (Stiff brome) 1.0	1:1703050-1703242	-	275	0.79	AGAAGCCGCCUUCAAGGACUU		OtherRNA	ShortStack
bdi-b1.0r1-376	Brachypodium distachyon (Stiff brome) 1.0	1:1703347-1703514	-	223	0.64	UGCAGUUCCCUCAAAG		OtherRNA	ShortStack
bdi-b1.0r1-377	Brachypodium distachyon (Stiff brome) 1.0	1:1703869-1703992	-	155	0.44	CAGGAUGGAACUCCCUGGC		OtherRNA	ShortStack
bdi-b1.0r1-378	Brachypodium distachyon (Stiff brome) 1.0	1:1704094-1704471	-	589	1.68	UUUGUUAGGGACAGGAGAGCAAUGAAG		OtherRNA	ShortStack
bdi-b1.0r1-379	Brachypodium distachyon (Stiff brome) 1.0	1:1705376-1705501	-	253	0.72	CGUUGCCUGGAAGGAGAGGAUG		OtherRNA	ShortStack
bdi-b1.0r1-387	Brachypodium distachyon (Stiff brome) 1.0	1:1742757-1742932	-	800	2.29	AGAUUCAGUUGGCAUAUAUCA		OtherRNA	ShortStack
bdi-b1.0r1-388	Brachypodium distachyon (Stiff brome) 1.0	1:1743015-1743044	-	583	1.67	CUACCAUUGGCAUACAUCA		OtherRNA	ShortStack
bdi-b1.0r1-420	Brachypodium distachyon (Stiff brome) 1.0	1:1917561-1918650	-	5,370	15.34	UUAUAUCUUCGAGACCAUUGAAAAACGGC		OtherRNA	ShortStack
bdi-b1.0r1-425	Brachypodium distachyon (Stiff brome) 1.0	1:1977056-1977552	+	768	2.19	GUAAUUGAUCAAUCAUAAUGCCGC		OtherRNA	ShortStack
bdi-b1.0r1-426	Brachypodium distachyon (Stiff brome) 1.0	1:1977693-1977953	+	542	1.55	GCAAGAACCAUCUGAUCAAGAAGG		OtherRNA	ShortStack
bdi-b1.0r1-427	Brachypodium distachyon (Stiff brome) 1.0	1:1978384-1978615	+	426	1.22	AGGACUGGGACGAUGAGGA		OtherRNA	ShortStack
bdi-b1.0r1-428	Brachypodium distachyon (Stiff brome) 1.0	1:1979210-1979813	+	1,477	4.22	CAAACAAGGACGAGAAGGCUGA		OtherRNA	ShortStack
bdi-b1.0r1-457	Brachypodium distachyon (Stiff brome) 1.0	1:2095589-2095865	+	494	1.41	CUGGGCGGGCUGGGAAAGCGGGAAAUG		OtherRNA	ShortStack
bdi-b1.0r1-458	Brachypodium distachyon (Stiff brome) 1.0	1:2097390-2097506	+	187	0.53	CUCGGACAGAGGUUCUAGGAG		OtherRNA	ShortStack
bdi-b1.0r1-459	Brachypodium distachyon (Stiff brome) 1.0	1:2098185-2098541	+	446	1.27	AAGUAAUCGUUGGAGACGA		OtherRNA	ShortStack
bdi-b1.0r1-467	Brachypodium distachyon (Stiff brome) 1.0	1:2124352-2124671	-	532	1.52	CAAAGUUGUUUUUGAUCG		OtherRNA	ShortStack
bdi-b1.0r1-480	Brachypodium distachyon (Stiff brome) 1.0	1:2148666-2148856	-	229	0.65	CAAGACAAUGACUGUAGUGGAA		OtherRNA	ShortStack
bdi-b1.0r1-487	Brachypodium distachyon (Stiff brome) 1.0	1:2196179-2196364	+	205	0.59	GACGAGCAGCUGCUCAUCGAGACCG		OtherRNA	ShortStack
bdi-b1.0r1-503	Brachypodium distachyon (Stiff brome) 1.0	1:2302986-2303138	-	729	2.08	UGUGCUAGAGGGCGUACG		OtherRNA	ShortStack
bdi-b1.0r1-514	Brachypodium distachyon (Stiff brome) 1.0	1:2337694-2338010	+	1,127	3.22	CCUGGACGGGGUCUACGGGGG		OtherRNA	ShortStack
bdi-b1.0r1-529	Brachypodium distachyon (Stiff brome) 1.0	1:2384957-2385208	-	80	0.23	UAGCGUUUGCCUGUACGGU		OtherRNA	ShortStack
bdi-b1.0r1-530	Brachypodium distachyon (Stiff brome) 1.0	1:2385291-2385450	-	37	0.11	GCAACACCCUACCUGAUCAAGACAAGCUGAAAGAU		OtherRNA	ShortStack
bdi-b1.0r1-531	Brachypodium distachyon (Stiff brome) 1.0	1:2387277-2387414	-	83	0.24	CCAGAGAACAUUGAAG		OtherRNA	ShortStack
bdi-b1.0r1-562	Brachypodium distachyon (Stiff brome) 1.0	1:2511523-2513492	-	5,067	14.47	UGGGAAGGAACUCUGCAAGAGCA		OtherRNA	ShortStack
bdi-b1.0r1-563	Brachypodium distachyon (Stiff brome) 1.0	1:2515370-2515389	-	77	0.22	CAUCGGCAUCGACCUCGGCA		OtherRNA	ShortStack
bdi-b1.0r1-567	Brachypodium distachyon (Stiff brome) 1.0	1:2528952-2529339	-	510	1.46	AUAGAUUUGGCGGUGUGACUCUGAAACUGCUUG		OtherRNA	ShortStack
bdi-b1.0r1-568	Brachypodium distachyon (Stiff brome) 1.0	1:2529427-2529691	-	938	2.68	ACCAGAAAGAGAUCGUUGUGGAGA		OtherRNA	ShortStack
bdi-b1.0r1-581	Brachypodium distachyon (Stiff brome) 1.0	1:2586355-2586454	+	4,787	13.67	UCCGUCGUAGUCUAGG		OtherRNA	ShortStack
bdi-b1.0r1-582	Brachypodium distachyon (Stiff brome) 1.0	1:2593279-2593369	+	19,329	55.21	UCCGUCGUAGUCUAGG		OtherRNA	ShortStack
bdi-b1.0r1-585	Brachypodium distachyon (Stiff brome) 1.0	1:2613409-2613574	-	2,262	6.46	CAUUUCUCGGAAUGCCCCC		OtherRNA	ShortStack
bdi-b1.0r1-587	Brachypodium distachyon (Stiff brome) 1.0	1:2632690-2633118	.	2,313	6.61	UCUGGAUUUGGAGAAGUGC		OtherRNA	ShortStack
bdi-b1.0r1-588	Brachypodium distachyon (Stiff brome) 1.0	1:2633312-2633347	.	25	0.07	UGAUUUUCCAAAUAAGG		OtherRNA	ShortStack
bdi-b1.0r1-589	Brachypodium distachyon (Stiff brome) 1.0	1:2634147-2634495	-	2,484	7.10	CCUGGACGGGGUCUACGGGGG		OtherRNA	ShortStack
bdi-b1.0r1-595	Brachypodium distachyon (Stiff brome) 1.0	1:2657570-2657618	+	100	0.29	AGGACAUCGUGGAGAUGCCGGC		OtherRNA	ShortStack
bdi-b1.0r1-609	Brachypodium distachyon (Stiff brome) 1.0	1:2710568-2712143	+	31,255	89.28	UCUGGCUGGUAGAGCAGAGGA		OtherRNA	ShortStack
bdi-b1.0r1-622	Brachypodium distachyon (Stiff brome) 1.0	1:2769082-2769148	-	61	0.17	UUGGUUGUACUGAAAGUUUGUUUA		OtherRNA	ShortStack
bdi-b1.0r1-623	Brachypodium distachyon (Stiff brome) 1.0	1:2769550-2769746	-	1,086	3.10	CAUGAACGGAUGGGAUAUUU		OtherRNA	ShortStack
bdi-b1.0r1-624	Brachypodium distachyon (Stiff brome) 1.0	1:2769884-2770041	-	354	1.01	ACUUACUCAUUGCACUCAUUAG		OtherRNA	ShortStack
bdi-b1.0r1-625	Brachypodium distachyon (Stiff brome) 1.0	1:2770349-2770796	-	584	1.67	ACUUACUCAUUGCACUCAUUAG		OtherRNA	ShortStack
bdi-b1.0r1-627	Brachypodium distachyon (Stiff brome) 1.0	1:2775551-2775569	+	16,797	47.98	UUCAUGGACGUUGAGG		OtherRNA	ShortStack
bdi-b1.0r1-629	Brachypodium distachyon (Stiff brome) 1.0	1:2800662-2800687	-	257	0.73	GUCAGGAUGGCCGAGUGG		OtherRNA	ShortStack
bdi-b1.0r1-636	Brachypodium distachyon (Stiff brome) 1.0	1:2817883-2818139	+	491	1.40	GUGGCUGAUUGUGGUUCUGGAAUUUUUGCAG		OtherRNA	ShortStack
bdi-b1.0r1-637	Brachypodium distachyon (Stiff brome) 1.0	1:2818323-2818720	+	335	0.96	CACUGUAAAUACGGC		OtherRNA	ShortStack
bdi-b1.0r1-642	Brachypodium distachyon (Stiff brome) 1.0	1:2857862-2858097	-	446	1.27	UAUGUUGGGCUCUGAGAUGUUUCUGA		OtherRNA	ShortStack
bdi-b1.0r1-659	Brachypodium distachyon (Stiff brome) 1.0	1:2918582-2918695	-	17,937	51.24	UCCGUCGUAGUCUAGG		OtherRNA	ShortStack
bdi-b1.0r1-662	Brachypodium distachyon (Stiff brome) 1.0	1:2937750-2937768	+	321	0.92	UGCGAUGGAGGGACGGA		OtherRNA	ShortStack
bdi-b1.0r1-686	Brachypodium distachyon (Stiff brome) 1.0	1:3076307-3076537	+	3,019	8.62	AAGCACUUGAUGAGCUCU		OtherRNA	ShortStack
bdi-b1.0r1-694	Brachypodium distachyon (Stiff brome) 1.0	1:3103288-3103630	-	213	0.61	CUGAAGAGAACCUGGAGCUGAUG		OtherRNA	ShortStack
bdi-b1.0r1-709	Brachypodium distachyon (Stiff brome) 1.0	1:3147652-3148423	-	2,418	6.91	CGGAGAAGGUGAACGCCGGCA		OtherRNA	ShortStack
bdi-b1.0r1-728	Brachypodium distachyon (Stiff brome) 1.0	1:3280170-3280545	+	758	2.17	UUCACGAGAUCUUGACUGUCGGC		OtherRNA	ShortStack
bdi-b1.0r1-729	Brachypodium distachyon (Stiff brome) 1.0	1:3282115-3282132	+	735	2.10	CGGGAUGUAGCGCAGC		OtherRNA	ShortStack
bdi-b1.0r1-742	Brachypodium distachyon (Stiff brome) 1.0	1:3344995-3345024	+	3,655	10.44	UUGACUGAAGAUCUUAUGUGCAGAG		OtherRNA	ShortStack
bdi-b1.0r1-788	Brachypodium distachyon (Stiff brome) 1.0	1:3591233-3591263	+	266	0.76	AGCAAGAGUAAGCUGGUCUGGUGAUUUGA		OtherRNA	ShortStack
bdi-b1.0r1-798	Brachypodium distachyon (Stiff brome) 1.0	1:3620623-3621507	.	1,548	4.42	CCAAAGCGCUUGAGAG		OtherRNA	ShortStack
bdi-b1.0r1-800	Brachypodium distachyon (Stiff brome) 1.0	1:3626812-3626889	+	233	0.67	CUGAUAACGCGAAGG		OtherRNA	ShortStack
bdi-b1.0r1-802	Brachypodium distachyon (Stiff brome) 1.0	1:3631374-3631458	+	2,127	6.08	UUAGCUCUAUCUGAUCA		OtherRNA	ShortStack
bdi-b1.0r1-803	Brachypodium distachyon (Stiff brome) 1.0	1:3631805-3632200	+	1,585	4.53	ACUACCUGGCAGAAUUCUCC		OtherRNA	ShortStack
bdi-b1.0r1-805	Brachypodium distachyon (Stiff brome) 1.0	1:3637536-3637837	-	5,506	15.73	GGCUAAGAUCAAGUGUAGUAUCUGUUC		OtherRNA	ShortStack
bdi-b1.0r1-837	Brachypodium distachyon (Stiff brome) 1.0	1:3753220-3753592	+	464	1.33	GUAUGUUACUCCUUUGCUAUCUUCUCUGUUUC		OtherRNA	ShortStack
bdi-b1.0r1-838	Brachypodium distachyon (Stiff brome) 1.0	1:3754862-3755022	+	425	1.21	AGUGUAUGACUGUAUGGCAUGUUU		OtherRNA	ShortStack
bdi-b1.0r1-850	Brachypodium distachyon (Stiff brome) 1.0	1:3846238-3846706	+	1,289	3.68	AUCGACAUGAACAAGAG		OtherRNA	ShortStack
bdi-b1.0r1-857	Brachypodium distachyon (Stiff brome) 1.0	1:3881417-3881859	+	1,018	2.91	AGGGCGGAGACUCUCGAACG		OtherRNA	ShortStack
bdi-b1.0r1-858	Brachypodium distachyon (Stiff brome) 1.0	1:3882802-3883070	+	847	2.42	UGCCAUUCGUUGGUUAUUAGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-859	Brachypodium distachyon (Stiff brome) 1.0	1:3883653-3883880	.	425	1.21	ACAUAAACUGAAACAUUCUGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-860	Brachypodium distachyon (Stiff brome) 1.0	1:3887261-3887535	-	824	2.35	CGAGACCUAAGACUUAAUCUAAAAUA		OtherRNA	ShortStack
bdi-b1.0r1-861	Brachypodium distachyon (Stiff brome) 1.0	1:3888393-3889030	.	8,921	25.48	UAUUUGUCCUCUGAGCUUUCACCCAGG		OtherRNA	ShortStack
bdi-b1.0r1-863	Brachypodium distachyon (Stiff brome) 1.0	1:3895618-3895662	-	620	1.77	AGGCCUUUCAACCAAUCAAUACG		OtherRNA	ShortStack
bdi-b1.0r1-864	Brachypodium distachyon (Stiff brome) 1.0	1:3895798-3896284	-	569	1.63	UUGAACCUUUUUUCUAAUAUUCGUUGA		OtherRNA	ShortStack
bdi-b1.0r1-865	Brachypodium distachyon (Stiff brome) 1.0	1:3896521-3896823	-	4,658	13.31	GGUAGUUCGACUGCGGAAUUU		OtherRNA	ShortStack
bdi-b1.0r1-866	Brachypodium distachyon (Stiff brome) 1.0	1:3900473-3900884	.	3,444	9.84	UAAACCACGAUCGAAUCUAUGGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-867	Brachypodium distachyon (Stiff brome) 1.0	1:3901060-3901413	-	5,701	16.29	GUAACAGUAGAGUUCUAUGGUGGC		OtherRNA	ShortStack
bdi-b1.0r1-868	Brachypodium distachyon (Stiff brome) 1.0	1:3903174-3903951	+	3,428	9.79	CAUCAGGUUAAGAUGGAUCUAAACCAAU		OtherRNA	ShortStack
bdi-b1.0r1-869	Brachypodium distachyon (Stiff brome) 1.0	1:3904311-3905174	.	3,599	10.28	UAUAGCCCGGAGACGACGAACAAA		OtherRNA	ShortStack
bdi-b1.0r1-870	Brachypodium distachyon (Stiff brome) 1.0	1:3905607-3905908	.	402	1.15	CGAUCUUCCUAUUUCUUU		OtherRNA	ShortStack
bdi-b1.0r1-871	Brachypodium distachyon (Stiff brome) 1.0	1:3906301-3906901	-	1,129	3.23	ACUUGAAUCGUCUGAUUCC		OtherRNA	ShortStack
bdi-b1.0r1-872	Brachypodium distachyon (Stiff brome) 1.0	1:3907454-3907680	.	572	1.63	GUUAGAGCUCUAAUA		OtherRNA	ShortStack
bdi-b1.0r1-873	Brachypodium distachyon (Stiff brome) 1.0	1:3907950-3908262	-	912	2.61	ACAAGAUCCAACCAAAUAGUAGA		OtherRNA	ShortStack
bdi-b1.0r1-874	Brachypodium distachyon (Stiff brome) 1.0	1:3909722-3910117	.	484	1.38	UCUGAUCAUAGAGAAGCCGU		OtherRNA	ShortStack
bdi-b1.0r1-875	Brachypodium distachyon (Stiff brome) 1.0	1:3910205-3911234	-	28,149	80.41	AUUUUAUUAUGAUCCAUUUCGCGA		OtherRNA	ShortStack
bdi-b1.0r1-876	Brachypodium distachyon (Stiff brome) 1.0	1:3911975-3912446	-	2,688	7.68	AUAUUGGGUAGGUUGUGGUAUUUCAUUGC		OtherRNA	ShortStack
bdi-b1.0r1-877	Brachypodium distachyon (Stiff brome) 1.0	1:3912644-3912803	-	385	1.10	UUGAACCUUUUUUCUAAUAUUCGUUGA		OtherRNA	ShortStack
bdi-b1.0r1-878	Brachypodium distachyon (Stiff brome) 1.0	1:3913505-3913630	-	559	1.60	GGUUCGACCGCGGAAUUU		OtherRNA	ShortStack
bdi-b1.0r1-879	Brachypodium distachyon (Stiff brome) 1.0	1:3913974-3915549	.	17,886	51.09	ACUUAGGUAAGUGCUUUACCAACAUAUGUAGU		OtherRNA	ShortStack
bdi-b1.0r1-880	Brachypodium distachyon (Stiff brome) 1.0	1:3918974-3919133	-	502	1.43	UAUCUAAUUUAUUGUAGA		OtherRNA	ShortStack
bdi-b1.0r1-881	Brachypodium distachyon (Stiff brome) 1.0	1:3921178-3921334	+	47,972	137.03	AUAUAUUUCAAGUUAUUUCGGAUCU		OtherRNA	ShortStack
bdi-b1.0r1-882	Brachypodium distachyon (Stiff brome) 1.0	1:3921414-3921529	+	152	0.43	AAUUGUUGGUACCAAAAAAAGAGC		OtherRNA	ShortStack
bdi-b1.0r1-883	Brachypodium distachyon (Stiff brome) 1.0	1:3923136-3923215	-	5,136	14.67	GAGGGGAAAGUGAUCUCUGA		OtherRNA	ShortStack
bdi-b1.0r1-884	Brachypodium distachyon (Stiff brome) 1.0	1:3923350-3923757	-	51,338	146.65	CGAACUGAAACAUCUGAGUAGC		OtherRNA	ShortStack
bdi-b1.0r1-885	Brachypodium distachyon (Stiff brome) 1.0	1:3929602-3930595	-	25,564	73.02	UAAGAAUUUUUGAAGAAAAGAAAGC		OtherRNA	ShortStack
bdi-b1.0r1-886	Brachypodium distachyon (Stiff brome) 1.0	1:3931172-3931737	-	4,175	11.93	CAACCAAUCUGUAGUUGAUAGUCAAGGUCGCG		OtherRNA	ShortStack
bdi-b1.0r1-887	Brachypodium distachyon (Stiff brome) 1.0	1:3931833-3932407	-	57,020	162.88	GUAGAUAUUGAUGGUAU		OtherRNA	ShortStack
bdi-b1.0r1-888	Brachypodium distachyon (Stiff brome) 1.0	1:3932541-3933368	-	2,515	7.18	CAUUCUGAAAUGUUCUUCAUAAUUUUAGU		OtherRNA	ShortStack
bdi-b1.0r1-924	Brachypodium distachyon (Stiff brome) 1.0	1:4074930-4075015	-	7,974	22.78	GCACCAGUGGUCUAGUGGUAGAAUAGUACC		OtherRNA	ShortStack
bdi-b1.0r1-925	Brachypodium distachyon (Stiff brome) 1.0	1:4079411-4079439	+	541	1.55	UGUACUUCGGCGUACUCUGUAACC		OtherRNA	ShortStack
bdi-b1.0r1-929	Brachypodium distachyon (Stiff brome) 1.0	1:4094776-4095387	+	932	2.66	GGUUAUGCAAAAGACAUUCAGUUCAAU		OtherRNA	ShortStack
bdi-b1.0r1-945	Brachypodium distachyon (Stiff brome) 1.0	1:4167348-4167490	-	372	1.06	CAGACGGUCCUGUAGUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-946	Brachypodium distachyon (Stiff brome) 1.0	1:4167899-4167920	-	73	0.21	CCAAGGCUGUGAAGUCUGGGUC		OtherRNA	ShortStack
bdi-b1.0r1-960	Brachypodium distachyon (Stiff brome) 1.0	1:4215988-4216765	+	22,473	64.19	GGGUCCAUAGCUCAGUGG		OtherRNA	ShortStack
bdi-b1.0r1-963	Brachypodium distachyon (Stiff brome) 1.0	1:4223704-4223979	+	1,706	4.87	GUGUCCGGAGAAGGAAAUUGUUUAU		OtherRNA	ShortStack
bdi-b1.0r1-964	Brachypodium distachyon (Stiff brome) 1.0	1:4224046-4224086	+	171	0.49	UUUUGUCGGUGGGAAAUUA		OtherRNA	ShortStack
bdi-b1.0r1-970	Brachypodium distachyon (Stiff brome) 1.0	1:4251225-4251606	-	309	0.88	AGCAACAGCAGCAGCAGGAGGCCUAUGA		OtherRNA	ShortStack
bdi-b1.0r1-971	Brachypodium distachyon (Stiff brome) 1.0	1:4251758-4251854	-	139	0.40	GAAGUAGUCAAGCCUG		OtherRNA	ShortStack
bdi-b1.0r1-972	Brachypodium distachyon (Stiff brome) 1.0	1:4252071-4252291	-	171	0.49	GUGCUGGUUGCCAAGGAGCUGGUUA		OtherRNA	ShortStack
bdi-b1.0r1-973	Brachypodium distachyon (Stiff brome) 1.0	1:4252428-4252560	-	83	0.24	GAGGAAUUGUACAAUGGAACAUCA		OtherRNA	ShortStack
bdi-b1.0r1-974	Brachypodium distachyon (Stiff brome) 1.0	1:4252643-4252826	-	157	0.45	GUUGGCUAACAAAUGAUUGUUCUCUUGCAG		OtherRNA	ShortStack
bdi-b1.0r1-980	Brachypodium distachyon (Stiff brome) 1.0	1:4290621-4290920	-	7,502	21.43	CAACCAAUCUGUAGUUGAUAGUCAAGG		OtherRNA	ShortStack
bdi-b1.0r1-988	Brachypodium distachyon (Stiff brome) 1.0	1:4329506-4330151	-	641	1.83	CGGGGUGCGGAACGUGCUGCGGAU		OtherRNA	ShortStack
bdi-b1.0r1-989	Brachypodium distachyon (Stiff brome) 1.0	1:4330266-4330445	-	167	0.48	GGUGUUCCUGGACGGCGGCGUCCGCC		OtherRNA	ShortStack
bdi-b1.0r1-990	Brachypodium distachyon (Stiff brome) 1.0	1:4330553-4330622	-	103	0.29	GUGAAGUGGCUGCAGAGCAUC		OtherRNA	ShortStack
bdi-b1.0r1-991	Brachypodium distachyon (Stiff brome) 1.0	1:4330698-4331193	-	937	2.68	CCGACAUCAAGAACAG		OtherRNA	ShortStack
bdi-b1.0r1-992	Brachypodium distachyon (Stiff brome) 1.0	1:4331717-4331751	-	113	0.32	CGCAUACUGAUCGACGUUG		OtherRNA	ShortStack
bdi-b1.0r1-994	Brachypodium distachyon (Stiff brome) 1.0	1:4332513-4332696	-	376	1.07	ACGAGUGGACGCUCAAGGAGAACC		OtherRNA	ShortStack
bdi-b1.0r1-996	Brachypodium distachyon (Stiff brome) 1.0	1:4339685-4340726	+	2,700	7.71	AGGAUUUGUUAAGAU		OtherRNA	ShortStack
bdi-b1.0r1-1008	Brachypodium distachyon (Stiff brome) 1.0	1:4376885-4376999	+	1,408	4.02	ACCUGUGCUGAUUGACAUAGUUAUCUAAUCUGACU		OtherRNA	ShortStack
bdi-b1.0r1-1009	Brachypodium distachyon (Stiff brome) 1.0	1:4377157-4377316	+	1,659	4.74	AUUGCAAGAUCAGCUUCUUGUUUGGAUCUCGA		OtherRNA	ShortStack
bdi-b1.0r1-1010	Brachypodium distachyon (Stiff brome) 1.0	1:4377402-4377762	+	4,017	11.47	UUCCGUUGGCACAUGC		OtherRNA	ShortStack
bdi-b1.0r1-1011	Brachypodium distachyon (Stiff brome) 1.0	1:4377966-4378169	+	1,546	4.42	CUUAGUAUUUAAGUCUCUGAUGACA		OtherRNA	ShortStack
bdi-b1.0r1-1026	Brachypodium distachyon (Stiff brome) 1.0	1:4442705-4443364	.	1,791	5.12	UUAAUCGGAAUUACU		OtherRNA	ShortStack
bdi-b1.0r1-1073	Brachypodium distachyon (Stiff brome) 1.0	1:4573759-4573860	+	4,686	13.39	GGUUUCGUGGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-1074	Brachypodium distachyon (Stiff brome) 1.0	1:4579158-4579256	+	520	1.49	GACUCCGUGGCCCAAUGGA		OtherRNA	ShortStack
bdi-b1.0r1-1080	Brachypodium distachyon (Stiff brome) 1.0	1:4590273-4590372	+	5,689	16.25	GGGGAUGUAGCUCAGA		OtherRNA	ShortStack
bdi-b1.0r1-1082	Brachypodium distachyon (Stiff brome) 1.0	1:4596645-4597089	+	4,111	11.74	CAUAAUGAGGAAUACAAUUGUUGUCUGAUC		OtherRNA	ShortStack
bdi-b1.0r1-1083	Brachypodium distachyon (Stiff brome) 1.0	1:4597198-4597282	+	5,972	17.06	AACACUCAAUACUCUGAUUCC		OtherRNA	ShortStack
bdi-b1.0r1-1084	Brachypodium distachyon (Stiff brome) 1.0	1:4597387-4597661	+	180	0.51	AGUGGAAGAAGAAGAGAAUGAGGAGGC		OtherRNA	ShortStack
bdi-b1.0r1-1086	Brachypodium distachyon (Stiff brome) 1.0	1:4603690-4605331	.	13,115	37.46	UAGCUCGAUGCCAGAAU		OtherRNA	ShortStack
bdi-b1.0r1-1089	Brachypodium distachyon (Stiff brome) 1.0	1:4608071-4608358	.	659	1.88	CCGGCGAGACCUCCA		OtherRNA	ShortStack
bdi-b1.0r1-1092	Brachypodium distachyon (Stiff brome) 1.0	1:4615372-4615469	-	1,500	4.29	CAAUGAAACACUCAAUACUUCUGAUUC		OtherRNA	ShortStack
bdi-b1.0r1-1093	Brachypodium distachyon (Stiff brome) 1.0	1:4615576-4616455	-	21,481	61.36	UCUCGGUGAUGAUGAACACAGAUGACG		OtherRNA	ShortStack
bdi-b1.0r1-1095	Brachypodium distachyon (Stiff brome) 1.0	1:4633803-4634455	-	613	1.75	UGAAAAGGGAAGGGAUA		OtherRNA	ShortStack
bdi-b1.0r1-1113	Brachypodium distachyon (Stiff brome) 1.0	1:4683801-4684240	-	1,144	3.27	UUUAGGACGAACUUUACU		OtherRNA	ShortStack
bdi-b1.0r1-1115	Brachypodium distachyon (Stiff brome) 1.0	1:4696813-4696966	-	641	1.83	CAAGAUGGAUGCCACCACUCCCAAGU		OtherRNA	ShortStack
bdi-b1.0r1-1116	Brachypodium distachyon (Stiff brome) 1.0	1:4697802-4698245	-	1,141	3.26	GUGCUUGACAAGCUGAAGGCUGA		OtherRNA	ShortStack
bdi-b1.0r1-1136	Brachypodium distachyon (Stiff brome) 1.0	1:4757465-4757849	+	1,586	4.53	AGGCUGCCGAGAUGAACAAGAGGU		OtherRNA	ShortStack
bdi-b1.0r1-1137	Brachypodium distachyon (Stiff brome) 1.0	1:4758479-4759566	+	5,118	14.62	AUGGAUGCCACCACUCCCAAGU		OtherRNA	ShortStack
bdi-b1.0r1-1151	Brachypodium distachyon (Stiff brome) 1.0	1:4787702-4787721	.	30	0.09	ACCAGAUGCAGCGCACUAGAG		OtherRNA	ShortStack
bdi-b1.0r1-1173	Brachypodium distachyon (Stiff brome) 1.0	1:4834334-4834993	+	1,511	4.32	CCGGUUCGAGAACUACGGG		OtherRNA	ShortStack
bdi-b1.0r1-1174	Brachypodium distachyon (Stiff brome) 1.0	1:4835107-4835293	+	456	1.30	AGCUGAUCGAUAGGAUAAAGGAGG		OtherRNA	ShortStack
bdi-b1.0r1-1204	Brachypodium distachyon (Stiff brome) 1.0	1:4997180-4997228	+	729	2.08	UUAAACAGGAGAACGCAG		OtherRNA	ShortStack
bdi-b1.0r1-1206	Brachypodium distachyon (Stiff brome) 1.0	1:4998535-4999286	-	1,041	2.97	CUGGAGAAGGACUACG		OtherRNA	ShortStack
bdi-b1.0r1-1209	Brachypodium distachyon (Stiff brome) 1.0	1:5005283-5005353	+	116	0.33	AGCUGGAACUUACUGUCCCAAGCGUC		OtherRNA	ShortStack
bdi-b1.0r1-1216	Brachypodium distachyon (Stiff brome) 1.0	1:5044491-5044590	-	8,641	24.68	UGGUUAGGACAUUGGACUCUGAAUCCA		OtherRNA	ShortStack
bdi-b1.0r1-1236	Brachypodium distachyon (Stiff brome) 1.0	1:5153080-5153098	-	766	2.19	AGACAUUGUCAGGUGG		OtherRNA	ShortStack
bdi-b1.0r1-1244	Brachypodium distachyon (Stiff brome) 1.0	1:5186753-5186869	+	7,493	21.40	UCCAUUGUCGUCUAGUCCGG		OtherRNA	ShortStack
bdi-b1.0r1-1250	Brachypodium distachyon (Stiff brome) 1.0	1:5227815-5228095	-	189	0.54	GAUUUCAUGAUUUGGCAUCGAU		OtherRNA	ShortStack
bdi-b1.0r1-1251	Brachypodium distachyon (Stiff brome) 1.0	1:5229777-5229975	-	188	0.54	CGCCAACCACGCGGUCGUCCU		OtherRNA	ShortStack
bdi-b1.0r1-1262	Brachypodium distachyon (Stiff brome) 1.0	1:5286681-5287118	-	498	1.42	ACGUGGAAGGCAUGAACGC		OtherRNA	ShortStack
bdi-b1.0r1-1313	Brachypodium distachyon (Stiff brome) 1.0	1:5469333-5469351	+	444	1.27	UGACAGAUAGAGUGAGCAC		OtherRNA	ShortStack
bdi-b1.0r1-1320	Brachypodium distachyon (Stiff brome) 1.0	1:5495220-5496004	+	269,757	770.55	GUCUGAGAGGAUGAUCAGUCACACU		OtherRNA	ShortStack
bdi-b1.0r1-1321	Brachypodium distachyon (Stiff brome) 1.0	1:5499757-5500134	.	1,074	3.07	ACUAAGGCUGGGAAGGAAGAAGGC		OtherRNA	ShortStack
bdi-b1.0r1-1325	Brachypodium distachyon (Stiff brome) 1.0	1:5506119-5506164	.	262	0.75	AAUAAAGAGAUUCGUUGGCGGUUU		OtherRNA	ShortStack
bdi-b1.0r1-1328	Brachypodium distachyon (Stiff brome) 1.0	1:5508696-5508714	-	166	0.47	UACAGUCCGGACGAUC		OtherRNA	ShortStack
bdi-b1.0r1-1338	Brachypodium distachyon (Stiff brome) 1.0	1:5591363-5591713	+	168	0.48	CACGGCUCUCUGUGCG		OtherRNA	ShortStack
bdi-b1.0r1-1339	Brachypodium distachyon (Stiff brome) 1.0	1:5592308-5592686	+	147	0.42	UCGUGAAUCUGUAAAG		OtherRNA	ShortStack
bdi-b1.0r1-1363	Brachypodium distachyon (Stiff brome) 1.0	1:5724571-5726315	-	2,891	8.26	CCAGAAGAUCUUCGACAACAUGCAGA		OtherRNA	ShortStack
bdi-b1.0r1-1384	Brachypodium distachyon (Stiff brome) 1.0	1:5798419-5798501	-	339	0.97	GACUCCGUGGCCCAAUGGA		OtherRNA	ShortStack
bdi-b1.0r1-1386	Brachypodium distachyon (Stiff brome) 1.0	1:5801158-5801285	-	6,575	18.78	CAAGAUCUCUGAGGCUC		OtherRNA	ShortStack
bdi-b1.0r1-1387	Brachypodium distachyon (Stiff brome) 1.0	1:5801475-5801584	-	1,146	3.27	UCUGGGUGACGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-1389	Brachypodium distachyon (Stiff brome) 1.0	1:5801700-5802100	-	2,718	7.76	UCUGCAUGACGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-1421	Brachypodium distachyon (Stiff brome) 1.0	1:5947524-5947638	-	651	1.86	GAGGGUGUCUUCUCUUUGAGGAGGCCCCA		OtherRNA	ShortStack
bdi-b1.0r1-1433	Brachypodium distachyon (Stiff brome) 1.0	1:6009762-6010913	.	7,514	21.46	GCGCCUGUAGCUCAGUGGA		OtherRNA	ShortStack
bdi-b1.0r1-1437	Brachypodium distachyon (Stiff brome) 1.0	1:6040323-6040424	-	413	1.18	CUGUCGAUCUGCCUUCCUG		OtherRNA	ShortStack
bdi-b1.0r1-1443	Brachypodium distachyon (Stiff brome) 1.0	1:6055383-6055966	-	591	1.69	AAAUGAGUCGGAUGAGAAGG		OtherRNA	ShortStack
bdi-b1.0r1-1444	Brachypodium distachyon (Stiff brome) 1.0	1:6056095-6056291	-	143	0.41	GGUAAGAUCCUCGUCGCUGGA		OtherRNA	ShortStack
bdi-b1.0r1-1445	Brachypodium distachyon (Stiff brome) 1.0	1:6057035-6057065	-	110	0.31	UUGGAAUGGACAGAAAAUGC		OtherRNA	ShortStack
bdi-b1.0r1-1460	Brachypodium distachyon (Stiff brome) 1.0	1:6169136-6169217	-	228	0.65	CCUAUCUUCUAGUGG		OtherRNA	ShortStack
bdi-b1.0r1-1470	Brachypodium distachyon (Stiff brome) 1.0	1:6223435-6225030	.	3,704	10.58	UAACUCUGUGCCAGCAGCCGCG		OtherRNA	ShortStack
bdi-b1.0r1-1473	Brachypodium distachyon (Stiff brome) 1.0	1:6236643-6236831	+	287	0.82	GCUGCUGUAGCUCAGUG		OtherRNA	ShortStack
bdi-b1.0r1-1480	Brachypodium distachyon (Stiff brome) 1.0	1:6256529-6257089	-	114	0.33	AGAUUGUUGAAUGAA		OtherRNA	ShortStack
bdi-b1.0r1-1493	Brachypodium distachyon (Stiff brome) 1.0	1:6287795-6288004	+	63	0.18	UUUACAGCAAUCUUGG		OtherRNA	ShortStack
bdi-b1.0r1-1494	Brachypodium distachyon (Stiff brome) 1.0	1:6288104-6288234	+	39	0.11	UGGUUGCUGGUUCGAUCAG		OtherRNA	ShortStack
bdi-b1.0r1-1495	Brachypodium distachyon (Stiff brome) 1.0	1:6289238-6289575	+	128	0.37	CACGAGCACGUCCACCUCGUCGUCC		OtherRNA	ShortStack
bdi-b1.0r1-1507	Brachypodium distachyon (Stiff brome) 1.0	1:6351901-6351917	-	145	0.41	AUGGUCGGUACAAAGG		OtherRNA	ShortStack
bdi-b1.0r1-1518	Brachypodium distachyon (Stiff brome) 1.0	1:6394221-6394402	-	647	1.85	CUGCAAAGGACCAGAAG		OtherRNA	ShortStack
bdi-b1.0r1-1543	Brachypodium distachyon (Stiff brome) 1.0	1:6531237-6531256	+	151	0.43	CCCCACGGGCGGCGGGC		OtherRNA	ShortStack
bdi-b1.0r1-1579	Brachypodium distachyon (Stiff brome) 1.0	1:6652512-6653242	.	1,376	3.93	CAAUGAAAUCGAGUA	miR5921	OtherRNA	ShortStack
bdi-b1.0r1-1584	Brachypodium distachyon (Stiff brome) 1.0	1:6675476-6675713	-	445	1.27	UUACUGUAGGCAACUGCUGUAAGAU		OtherRNA	ShortStack
bdi-b1.0r1-1585	Brachypodium distachyon (Stiff brome) 1.0	1:6675954-6676147	-	312	0.89	AAGCUUCGUCAUGAUGUG		OtherRNA	ShortStack
bdi-b1.0r1-1586	Brachypodium distachyon (Stiff brome) 1.0	1:6676245-6676378	-	335	0.96	AGGAUUUGUGGAGGAAGACUU		OtherRNA	ShortStack
bdi-b1.0r1-1587	Brachypodium distachyon (Stiff brome) 1.0	1:6677464-6677634	-	222	0.63	CAGCGGGCUAGUUGCUGCUGGUGUAAUU		OtherRNA	ShortStack
bdi-b1.0r1-1588	Brachypodium distachyon (Stiff brome) 1.0	1:6678104-6678200	-	333	0.95	ACUGGAUGAAAGUACUGGCU		OtherRNA	ShortStack
bdi-b1.0r1-1589	Brachypodium distachyon (Stiff brome) 1.0	1:6679130-6679153	-	99	0.28	UUCUGACACAACGAC	miR1130	OtherRNA	ShortStack
bdi-b1.0r1-1599	Brachypodium distachyon (Stiff brome) 1.0	1:6765244-6765387	-	73	0.21	ACUGAUUGUAUUGCUUGAUU		OtherRNA	ShortStack
bdi-b1.0r1-1610	Brachypodium distachyon (Stiff brome) 1.0	1:6793638-6794047	+	687	1.96	CGACCGGAGCAGGGACCUGGACA		OtherRNA	ShortStack
bdi-b1.0r1-1611	Brachypodium distachyon (Stiff brome) 1.0	1:6794658-6794878	+	296	0.85	AAGGACGGCCUCUCUGA		OtherRNA	ShortStack
bdi-b1.0r1-1612	Brachypodium distachyon (Stiff brome) 1.0	1:6795282-6795359	+	161	0.46	GCGCUGUACAAGUUUGGCAGACU		OtherRNA	ShortStack
bdi-b1.0r1-1613	Brachypodium distachyon (Stiff brome) 1.0	1:6796095-6796184	+	210	0.60	UGUAUGCUGAUUACCUGGACACUGC		OtherRNA	ShortStack
bdi-b1.0r1-1614	Brachypodium distachyon (Stiff brome) 1.0	1:6796320-6796712	+	376	1.07	CUGGCAGAACUGCAAUU		OtherRNA	ShortStack
bdi-b1.0r1-1655	Brachypodium distachyon (Stiff brome) 1.0	1:6967325-6967472	+	172	0.49	ACUGGAUUGACAGUGAACAAAGGA		OtherRNA	ShortStack
bdi-b1.0r1-1690	Brachypodium distachyon (Stiff brome) 1.0	1:7149812-7149853	-	31	0.09	UGGGCGUCAUGAACAAC		OtherRNA	ShortStack
bdi-b1.0r1-1691	Brachypodium distachyon (Stiff brome) 1.0	1:7150017-7150322	-	108	0.31	CGAAGGUCGUCACGG		OtherRNA	ShortStack
bdi-b1.0r1-1692	Brachypodium distachyon (Stiff brome) 1.0	1:7150663-7151108	-	187	0.53	UCGGACGAGGAGUUCAAGCGGUUCAUGGGGA		OtherRNA	ShortStack
bdi-b1.0r1-1724	Brachypodium distachyon (Stiff brome) 1.0	1:7259004-7259020	-	882	2.52	UUCAGUAGAGCGUAUG		OtherRNA	ShortStack
bdi-b1.0r1-1735	Brachypodium distachyon (Stiff brome) 1.0	1:7303274-7303291	+	929	2.65	AGGAACGAUUUGAAC		OtherRNA	ShortStack
bdi-b1.0r1-1741	Brachypodium distachyon (Stiff brome) 1.0	1:7318855-7319733	-	1,820	5.20	AAGGACCUGUGGUUGCUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-1742	Brachypodium distachyon (Stiff brome) 1.0	1:7319838-7320225	-	717	2.05	AAGGAGAUUGUUGAUCUCU		OtherRNA	ShortStack
bdi-b1.0r1-1743	Brachypodium distachyon (Stiff brome) 1.0	1:7320300-7320623	-	879	2.51	UGAUGAGGUGCGGACUGGCACU		OtherRNA	ShortStack
bdi-b1.0r1-1760	Brachypodium distachyon (Stiff brome) 1.0	1:7415969-7416152	+	9,942	28.40	GCGCUUGUAGCUCAGCGGA		OtherRNA	ShortStack
bdi-b1.0r1-1821	Brachypodium distachyon (Stiff brome) 1.0	1:7632332-7632470	+	56	0.16	CGCACCCCGUCGUAGCG		OtherRNA	ShortStack
bdi-b1.0r1-1825	Brachypodium distachyon (Stiff brome) 1.0	1:7639951-7640257	+	1,531	4.37	AUUGAUCUUGGACAGAACAGGACA		OtherRNA	ShortStack
bdi-b1.0r1-1833	Brachypodium distachyon (Stiff brome) 1.0	1:7674560-7674904	.	936	2.67	AGCGGAGCAGAGCAGU		OtherRNA	ShortStack
bdi-b1.0r1-1841	Brachypodium distachyon (Stiff brome) 1.0	1:7691873-7692195	-	500	1.43	ACUUGUGAUUUUGGACACAU		OtherRNA	ShortStack
bdi-b1.0r1-1842	Brachypodium distachyon (Stiff brome) 1.0	1:7692295-7692889	-	628	1.79	CUUAUGAAGAUCCUGAC		OtherRNA	ShortStack
bdi-b1.0r1-1847	Brachypodium distachyon (Stiff brome) 1.0	1:7703073-7703409	-	296	0.85	CAGAGAUUGUAAUCACGC		OtherRNA	ShortStack
bdi-b1.0r1-1848	Brachypodium distachyon (Stiff brome) 1.0	1:7703473-7703495	-	25	0.07	AUGGACGUCCUCUGACC		OtherRNA	ShortStack
bdi-b1.0r1-1855	Brachypodium distachyon (Stiff brome) 1.0	1:7734214-7734287	+	793	2.27	UGGAACGAUACAGAGAAGAUUAGC		OtherRNA	ShortStack
bdi-b1.0r1-1867	Brachypodium distachyon (Stiff brome) 1.0	1:7778622-7778636	-	115	0.33	UAAUNCAUGAUCUGG		OtherRNA	ShortStack
bdi-b1.0r1-1882	Brachypodium distachyon (Stiff brome) 1.0	1:7817594-7817712	.	1,016	2.90	ACAAGAAUUAUGAAACGGGAGAGC		OtherRNA	ShortStack
bdi-b1.0r1-1904	Brachypodium distachyon (Stiff brome) 1.0	1:7910340-7910370	+	553	1.58	CACGGAGCUGCAGAAAG		OtherRNA	ShortStack
bdi-b1.0r1-1914	Brachypodium distachyon (Stiff brome) 1.0	1:7942042-7942328	.	284	0.81	CAGCAUGUCUCUGAACCAGUAGGC		OtherRNA	ShortStack
bdi-b1.0r1-1926	Brachypodium distachyon (Stiff brome) 1.0	1:7999100-7999217	+	487	1.39	GAGGAUGAAGGAGAUCAG		OtherRNA	ShortStack
bdi-b1.0r1-1941	Brachypodium distachyon (Stiff brome) 1.0	1:8060409-8060431	-	1,937	5.53	AACACGGACCAAGGA		OtherRNA	ShortStack
bdi-b1.0r1-1958	Brachypodium distachyon (Stiff brome) 1.0	1:8128260-8128540	-	1,719	4.91	AUUAAAAGGGAUCGGAUGAAGUAG		OtherRNA	ShortStack
bdi-b1.0r1-1991	Brachypodium distachyon (Stiff brome) 1.0	1:8282790-8283255	-	175	0.50	GUGUUAACAAGCAAAGUAUCAAGUG		OtherRNA	ShortStack
bdi-b1.0r1-2004	Brachypodium distachyon (Stiff brome) 1.0	1:8329510-8329592	+	1,290	3.69	GGUUUCGUUGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-2008	Brachypodium distachyon (Stiff brome) 1.0	1:8339773-8340157	+	543	1.55	CGAGGAAAUGGUUGAAUUCAUG		OtherRNA	ShortStack
bdi-b1.0r1-2012	Brachypodium distachyon (Stiff brome) 1.0	1:8356681-8357262	+	415	1.19	CUGGGGUUCUUGGACGACGAGAA		OtherRNA	ShortStack
bdi-b1.0r1-2029	Brachypodium distachyon (Stiff brome) 1.0	1:8464553-8464672	+	1,609	4.60	UGUACUGACUGUUAUCUUAUGCAG		OtherRNA	ShortStack
bdi-b1.0r1-2060	Brachypodium distachyon (Stiff brome) 1.0	1:8636971-8637262	+	156	0.45	GCAGAGAAGAAUGCGAAGAACUCGGA		OtherRNA	ShortStack
bdi-b1.0r1-2069	Brachypodium distachyon (Stiff brome) 1.0	1:8686439-8686690	-	322	0.92	GAGAGACCGACCGGUGCUGUGAGAUC		OtherRNA	ShortStack
bdi-b1.0r1-2105	Brachypodium distachyon (Stiff brome) 1.0	1:8802850-8803298	+	8,143	23.26	AUUUUGGUAUUCAAGUAGA		OtherRNA	ShortStack
bdi-b1.0r1-2115	Brachypodium distachyon (Stiff brome) 1.0	1:8854403-8854751	.	6,973	19.92	GGAGGUCAGGAGUUCGAC		OtherRNA	ShortStack
bdi-b1.0r1-2137	Brachypodium distachyon (Stiff brome) 1.0	1:8907943-8908400	+	491	1.40	AGAGCAGAGGAGAACAGAACA		OtherRNA	ShortStack
bdi-b1.0r1-2138	Brachypodium distachyon (Stiff brome) 1.0	1:8908477-8908850	.	522	1.49	CAUACUGUAGUAAUUUGUGAUCAA		OtherRNA	ShortStack
bdi-b1.0r1-2148	Brachypodium distachyon (Stiff brome) 1.0	1:8983977-8984176	-	168	0.48	CGGCGCCGGCGCAGGAACAAGAAACUCAA		OtherRNA	ShortStack
bdi-b1.0r1-2166	Brachypodium distachyon (Stiff brome) 1.0	1:9064929-9065005	.	127	0.36	CACUGACUGGAGGAC		OtherRNA	ShortStack
bdi-b1.0r1-2176	Brachypodium distachyon (Stiff brome) 1.0	1:9103589-9103615	+	172	0.49	GUAGAAUAAGGUCAGAUGUUA		OtherRNA	ShortStack
bdi-b1.0r1-2183	Brachypodium distachyon (Stiff brome) 1.0	1:9149315-9149691	+	3,816	10.90	CAGAUGGAUUCAUAUAGAC		OtherRNA	ShortStack
bdi-b1.0r1-2184	Brachypodium distachyon (Stiff brome) 1.0	1:9149780-9149977	+	1,446	4.13	AACUAGAUGUGCUCCGCAAGCAGCCCGAGAUAUUC		OtherRNA	ShortStack
bdi-b1.0r1-2185	Brachypodium distachyon (Stiff brome) 1.0	1:9151464-9151554	+	201	0.57	UGAGAAUGUGGUCUCUGAGGC		OtherRNA	ShortStack
bdi-b1.0r1-2186	Brachypodium distachyon (Stiff brome) 1.0	1:9152249-9152534	+	334	0.95	UUGGGGUCGUUCGGAACUUGU		OtherRNA	ShortStack
bdi-b1.0r1-2211	Brachypodium distachyon (Stiff brome) 1.0	1:9249955-9249974	-	241	0.69	UAAUUCAUGAUCUNG		OtherRNA	ShortStack
bdi-b1.0r1-2212	Brachypodium distachyon (Stiff brome) 1.0	1:9262157-9262367	-	337	0.96	GUUCGUUUCCCUGGAUG		OtherRNA	ShortStack
bdi-b1.0r1-2217	Brachypodium distachyon (Stiff brome) 1.0	1:9267408-9267776	+	133	0.38	CGCGCUCCAGCACUCGGACUACCA		OtherRNA	ShortStack
bdi-b1.0r1-2233	Brachypodium distachyon (Stiff brome) 1.0	1:9316121-9316480	.	6,600	18.85	GUAAGAUCUUUUGUUGGACGAAGG		OtherRNA	ShortStack
bdi-b1.0r1-2242	Brachypodium distachyon (Stiff brome) 1.0	1:9352297-9352728	+	687,634	1,964.21	CCUAACGAACGAACGAUUUGAAC		OtherRNA	ShortStack
bdi-b1.0r1-2256	Brachypodium distachyon (Stiff brome) 1.0	1:9456112-9456217	-	240	0.69	UGAGUGACAUGAGUGCUGAAUUUUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-2257	Brachypodium distachyon (Stiff brome) 1.0	1:9457900-9458252	-	258	0.74	GCUGACUCAAGGGGAACUAACAC		OtherRNA	ShortStack
bdi-b1.0r1-2276	Brachypodium distachyon (Stiff brome) 1.0	1:9517246-9517352	+	823	2.35	UGGCUGUGAUGACAACAAAAU		OtherRNA	ShortStack
bdi-b1.0r1-2277	Brachypodium distachyon (Stiff brome) 1.0	1:9517434-9517507	+	298	0.85	ACGGGAGUUCAACAAAUCUGAAAAGCCAUUGCA		OtherRNA	ShortStack
bdi-b1.0r1-2278	Brachypodium distachyon (Stiff brome) 1.0	1:9517850-9517948	+	1,264	3.61	UGGCUGUGAUGACAAAAUAACUUCCAU		OtherRNA	ShortStack
bdi-b1.0r1-2279	Brachypodium distachyon (Stiff brome) 1.0	1:9518249-9518346	+	3,890	11.11	UGGCUGUGAUGACAAAAUAACUUCCGU		OtherRNA	ShortStack
bdi-b1.0r1-2280	Brachypodium distachyon (Stiff brome) 1.0	1:9519620-9520371	+	3,538	10.11	UGGACAUGAAUAGAAAG		OtherRNA	ShortStack
bdi-b1.0r1-2281	Brachypodium distachyon (Stiff brome) 1.0	1:9520718-9520818	+	525	1.50	UCCACAGGCUUUCUUGAAC	miR396	OtherRNA	ShortStack
bdi-b1.0r1-2306	Brachypodium distachyon (Stiff brome) 1.0	1:9629659-9629902	+	14,728	42.07	CCAGAGAGCCUUUUU	miR7364	OtherRNA	ShortStack
bdi-b1.0r1-2329	Brachypodium distachyon (Stiff brome) 1.0	1:9678322-9679006	-	3,623	10.35	CAUGAACGGCAAGGACCUGGAUGGC		OtherRNA	ShortStack
bdi-b1.0r1-2330	Brachypodium distachyon (Stiff brome) 1.0	1:9679101-9679398	-	1,693	4.84	GUUUGUCUAGGAGCUUUCCUCUGUUACC		OtherRNA	ShortStack
bdi-b1.0r1-2333	Brachypodium distachyon (Stiff brome) 1.0	1:9682912-9683090	+	13,176	37.64	GCGCCUGUAGCUCAGUGGA		OtherRNA	ShortStack
bdi-b1.0r1-2339	Brachypodium distachyon (Stiff brome) 1.0	1:9694883-9695461	.	817	2.33	UGACGGUCUCUGAACUGGUGGAGC		OtherRNA	ShortStack
bdi-b1.0r1-2366	Brachypodium distachyon (Stiff brome) 1.0	1:9793986-9794031	+	618	1.77	UUCGGAUAAAGGAAGCUGCUGAAA		OtherRNA	ShortStack
bdi-b1.0r1-2378	Brachypodium distachyon (Stiff brome) 1.0	1:9836175-9836879	-	195,369	558.07	AGGGAUGUAGCGCAGCUUGG		OtherRNA	ShortStack
bdi-b1.0r1-2406	Brachypodium distachyon (Stiff brome) 1.0	1:9946912-9947058	-	442	1.26	GAUAUACCUGCUCUACCACACUGGUCU		OtherRNA	ShortStack
bdi-b1.0r1-2422	Brachypodium distachyon (Stiff brome) 1.0	1:10001292-10001319	+	264	0.75	GCAGCUGAACUCAAAUG		OtherRNA	ShortStack
bdi-b1.0r1-2435	Brachypodium distachyon (Stiff brome) 1.0	1:10042191-10042295	-	2,885	8.24	GCACCAGUGGUCUAGUGGUAGAAUAGUACC		OtherRNA	ShortStack
bdi-b1.0r1-2442	Brachypodium distachyon (Stiff brome) 1.0	1:10067097-10067435	-	701	2.00	UUGGAACCAAAGUUGGAACAAGACGCA		OtherRNA	ShortStack
bdi-b1.0r1-2443	Brachypodium distachyon (Stiff brome) 1.0	1:10068801-10068871	-	170	0.49	UGAAGGGCUCUGACCACCGACG		OtherRNA	ShortStack
bdi-b1.0r1-2444	Brachypodium distachyon (Stiff brome) 1.0	1:10069166-10069293	-	167	0.48	UUGUAAACGAGACUAAGCUUG		OtherRNA	ShortStack
bdi-b1.0r1-2445	Brachypodium distachyon (Stiff brome) 1.0	1:10069395-10069629	-	607	1.73	CUGGUGUUGUAGAUGGACGGA		OtherRNA	ShortStack
bdi-b1.0r1-2446	Brachypodium distachyon (Stiff brome) 1.0	1:10069705-10069868	-	218	0.62	CUGGAUUGAAUGUACUUAUUGAGACAUA		OtherRNA	ShortStack
bdi-b1.0r1-2447	Brachypodium distachyon (Stiff brome) 1.0	1:10071179-10071504	-	416	1.19	UUUUCAAUGGUGUAGAAAGAUGGC		OtherRNA	ShortStack
bdi-b1.0r1-2457	Brachypodium distachyon (Stiff brome) 1.0	1:10101335-10101494	-	422	1.21	UUCGGUUGAGCACGUUGUAGU		OtherRNA	ShortStack
bdi-b1.0r1-2458	Brachypodium distachyon (Stiff brome) 1.0	1:10101560-10101959	-	1,406	4.02	GAAGAUCAAGGACAAGAUCACCGGC		OtherRNA	ShortStack
bdi-b1.0r1-2461	Brachypodium distachyon (Stiff brome) 1.0	1:10112378-10112466	+	378	1.08	UACUUGUGUAGGAUAGC		OtherRNA	ShortStack
bdi-b1.0r1-2467	Brachypodium distachyon (Stiff brome) 1.0	1:10148081-10148357	+	10,136	28.95	UCGGUGGGACCUCCA	miR9993	OtherRNA	ShortStack
bdi-b1.0r1-2481	Brachypodium distachyon (Stiff brome) 1.0	1:10201320-10201336	+	321	0.92	CUAUGACUGGAAUGCAG		OtherRNA	ShortStack
bdi-b1.0r1-2497	Brachypodium distachyon (Stiff brome) 1.0	1:10259629-10259654	+	420	1.20	UAUAUUAACGAUUUUGGAUGUCAG		OtherRNA	ShortStack
bdi-b1.0r1-2522	Brachypodium distachyon (Stiff brome) 1.0	1:10416160-10416178	+	179	0.51	CCGGCGACGGAACCA		OtherRNA	ShortStack
bdi-b1.0r1-2572	Brachypodium distachyon (Stiff brome) 1.0	1:10635677-10635763	+	142	0.41	UUGCUGAGAACUCGUUCACCGGCAUGG		OtherRNA	ShortStack
bdi-b1.0r1-2573	Brachypodium distachyon (Stiff brome) 1.0	1:10636089-10636522	+	828	2.37	UGUGCUUGUCAUCACAGGAUGUUCCA		OtherRNA	ShortStack
bdi-b1.0r1-2597	Brachypodium distachyon (Stiff brome) 1.0	1:10717765-10718082	+	18,112	51.74	UUUCGGCUGAGAGGA		OtherRNA	ShortStack
bdi-b1.0r1-2598	Brachypodium distachyon (Stiff brome) 1.0	1:10718155-10718315	+	950	2.71	AAUGCCAUGUGGUAUCUGAUGCUUGG		OtherRNA	ShortStack
bdi-b1.0r1-2602	Brachypodium distachyon (Stiff brome) 1.0	1:10735321-10735408	+	2,338	6.68	GUCUGGGUGGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-2620	Brachypodium distachyon (Stiff brome) 1.0	1:10797177-10797192	+	298	0.85	GUAUGUUGUCACUGUC		OtherRNA	ShortStack
bdi-b1.0r1-2641	Brachypodium distachyon (Stiff brome) 1.0	1:10860390-10860929	-	8,531	24.37	ACGGCCCUCUGUGAA		OtherRNA	ShortStack
bdi-b1.0r1-2657	Brachypodium distachyon (Stiff brome) 1.0	1:10957309-10957403	.	174	0.50	UCCCGUCUCCGCACCCA		OtherRNA	ShortStack
bdi-b1.0r1-2698	Brachypodium distachyon (Stiff brome) 1.0	1:11071845-11072126	-	230	0.66	UCAGACCGUAGAAGAAUAGUUGGUG		OtherRNA	ShortStack
bdi-b1.0r1-2699	Brachypodium distachyon (Stiff brome) 1.0	1:11072774-11072915	-	398	1.14	GAUGUUGGACAAGCUU		OtherRNA	ShortStack
bdi-b1.0r1-2713	Brachypodium distachyon (Stiff brome) 1.0	1:11118474-11118687	+	415	1.19	CAAGGAAUUUGAAUCGGAGCU		OtherRNA	ShortStack
bdi-b1.0r1-2723	Brachypodium distachyon (Stiff brome) 1.0	1:11150932-11151109	.	452	1.29	UGGGGCGCAAGCAUAGG		OtherRNA	ShortStack
bdi-b1.0r1-2759	Brachypodium distachyon (Stiff brome) 1.0	1:11300829-11301158	.	1,179	3.37	AGUUCAUAUCGACGGCG		OtherRNA	ShortStack
bdi-b1.0r1-2801	Brachypodium distachyon (Stiff brome) 1.0	1:11476833-11476850	+	283	0.81	GGGAUUNUAGUUCAAU		OtherRNA	ShortStack
bdi-b1.0r1-2832	Brachypodium distachyon (Stiff brome) 1.0	1:11574939-11574959	+	740	2.11	GUUAAUCGGAAUUACU		OtherRNA	ShortStack
bdi-b1.0r1-2872	Brachypodium distachyon (Stiff brome) 1.0	1:11774020-11774513	-	1,261	3.60	AGGAAAAAGUCGAUGGCAGUUGAG		OtherRNA	ShortStack
bdi-b1.0r1-2893	Brachypodium distachyon (Stiff brome) 1.0	1:11830820-11831004	.	391	1.12	GGGGAUGUAGUUCAAA		OtherRNA	ShortStack
bdi-b1.0r1-2899	Brachypodium distachyon (Stiff brome) 1.0	1:11839145-11839362	.	1,483	4.24	AUCAGACGGAACUUAGAAAGAACU		OtherRNA	ShortStack
bdi-b1.0r1-2917	Brachypodium distachyon (Stiff brome) 1.0	1:11907957-11909054	.	1,715	4.90	AGCGGAGUAGAGCAUU		OtherRNA	ShortStack
bdi-b1.0r1-2947	Brachypodium distachyon (Stiff brome) 1.0	1:12057394-12057752	+	452	1.29	CUACGAGCUCUACAACCGGAACG		OtherRNA	ShortStack
bdi-b1.0r1-2948	Brachypodium distachyon (Stiff brome) 1.0	1:12058641-12058859	+	195	0.56	AAGGACAUCAAUGCUCUUGAGCAGC		OtherRNA	ShortStack
bdi-b1.0r1-2949	Brachypodium distachyon (Stiff brome) 1.0	1:12058960-12059130	+	284	0.81	CGACGACAUGUGGGCUGGAUG		OtherRNA	ShortStack
bdi-b1.0r1-2950	Brachypodium distachyon (Stiff brome) 1.0	1:12059224-12059828	+	884	2.53	UUGUGAACUUGAAGAAGGAG		OtherRNA	ShortStack
bdi-b1.0r1-2952	Brachypodium distachyon (Stiff brome) 1.0	1:12063131-12063295	-	45,363	129.58	GUCGUUGUAGUAUAGUGGUAAGUAUUCCCGCC	miR6300	OtherRNA	ShortStack
bdi-b1.0r1-2965	Brachypodium distachyon (Stiff brome) 1.0	1:12096035-12096053	-	2,486	7.10	UCGUGACCCUGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-2966	Brachypodium distachyon (Stiff brome) 1.0	1:12104869-12104888	+	519	1.48	CGUGAGAUGUUGGGUUAAG		OtherRNA	ShortStack
bdi-b1.0r1-2974	Brachypodium distachyon (Stiff brome) 1.0	1:12126469-12126542	+	571	1.63	AGGUUGGACUGAUUGCUGCCGUGGCUAGGUGUUUU		OtherRNA	ShortStack
bdi-b1.0r1-2977	Brachypodium distachyon (Stiff brome) 1.0	1:12133481-12134087	+	433	1.24	CAGAACAUGAGGAUGUCAA		OtherRNA	ShortStack
bdi-b1.0r1-3004	Brachypodium distachyon (Stiff brome) 1.0	1:12231058-12232275	-	7,781	22.23	UCGGACGAUCGAUAUAUGCAUGCAUGUGU		OtherRNA	ShortStack
bdi-b1.0r1-3096	Brachypodium distachyon (Stiff brome) 1.0	1:12527682-12528319	.	5,013	14.32	CAAUGUGUUGUUGGAUUGAAGCGG		OtherRNA	ShortStack
bdi-b1.0r1-3165	Brachypodium distachyon (Stiff brome) 1.0	1:12842524-12842543	+	97,354	278.09	GGGAUUGUAGUUCAA		OtherRNA	ShortStack
bdi-b1.0r1-3172	Brachypodium distachyon (Stiff brome) 1.0	1:12886607-12886946	-	384	1.10	UUGGACAAGGGACACGA		OtherRNA	ShortStack
bdi-b1.0r1-3173	Brachypodium distachyon (Stiff brome) 1.0	1:12887161-12887265	-	347	0.99	CAAGGACAAGAAGAAGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-3239	Brachypodium distachyon (Stiff brome) 1.0	1:13106005-13106192	-	78	0.22	AUAGCAGGGUAAUACAGUCGG		OtherRNA	ShortStack
bdi-b1.0r1-3240	Brachypodium distachyon (Stiff brome) 1.0	1:13106751-13107199	-	256	0.73	CAGGAGUUGGCAAAACGGAAUUAGC		OtherRNA	ShortStack
bdi-b1.0r1-3241	Brachypodium distachyon (Stiff brome) 1.0	1:13107289-13107581	-	211	0.60	UCUGAUAGAGAGAAG		OtherRNA	ShortStack
bdi-b1.0r1-3242	Brachypodium distachyon (Stiff brome) 1.0	1:13107730-13107942	-	138	0.39	CAGAACAAACUGACUGAGCAG		OtherRNA	ShortStack
bdi-b1.0r1-3243	Brachypodium distachyon (Stiff brome) 1.0	1:13110155-13110350	-	302	0.86	ACGGCUAUAGCUGAAGG		OtherRNA	ShortStack
bdi-b1.0r1-3245	Brachypodium distachyon (Stiff brome) 1.0	1:13111820-13112020	-	228	0.65	UCUGAUACAAAGAGCAAGAGACU		OtherRNA	ShortStack
bdi-b1.0r1-3246	Brachypodium distachyon (Stiff brome) 1.0	1:13112191-13112350	-	169	0.48	ACCAGAUUGUGGAGACUGAGC		OtherRNA	ShortStack
bdi-b1.0r1-3282	Brachypodium distachyon (Stiff brome) 1.0	1:13339372-13339534	+	3,739	10.68	GACCGCAUAGCGCAGUGGA		OtherRNA	ShortStack
bdi-b1.0r1-3292	Brachypodium distachyon (Stiff brome) 1.0	1:13369316-13369593	+	575	1.64	AUGAAGUUGGUAUGAAGGCGA		OtherRNA	ShortStack
bdi-b1.0r1-3301	Brachypodium distachyon (Stiff brome) 1.0	1:13387790-13388076	.	625	1.79	AAUCAGUAGUUCUCUAGACAAAGC		OtherRNA	ShortStack
bdi-b1.0r1-3317	Brachypodium distachyon (Stiff brome) 1.0	1:13487320-13487473	+	952	2.72	GUAGAAUAGUACCCUGCCACGGU		OtherRNA	ShortStack
bdi-b1.0r1-3335	Brachypodium distachyon (Stiff brome) 1.0	1:13602287-13602501	+	7,548	21.56	CGUUCCCCGGCAACGGCGCCA	miR8175	OtherRNA	ShortStack
bdi-b1.0r1-3374	Brachypodium distachyon (Stiff brome) 1.0	1:13803993-13804088	+	66,940	191.21	GGGGGUGUAGCUCAUA		OtherRNA	ShortStack
bdi-b1.0r1-3376	Brachypodium distachyon (Stiff brome) 1.0	1:13812376-13813037	+	1,405	4.01	CAUGACGAAUCUCGGCGAGA		OtherRNA	ShortStack
bdi-b1.0r1-3383	Brachypodium distachyon (Stiff brome) 1.0	1:13851094-13851111	+	211	0.60	AGUGGUACGCGAGCUG		OtherRNA	ShortStack
bdi-b1.0r1-3441	Brachypodium distachyon (Stiff brome) 1.0	1:14088764-14093805	-	73,544	210.08	CUAAGAUAAGAACCUAACAGAAGCG		OtherRNA	ShortStack
bdi-b1.0r1-3470	Brachypodium distachyon (Stiff brome) 1.0	1:14225579-14225605	+	703	2.01	UUCCUUGACUGUAUUUUGCUUCAAG		OtherRNA	ShortStack
bdi-b1.0r1-3486	Brachypodium distachyon (Stiff brome) 1.0	1:14326288-14326564	+	788	2.25	CUUAGCUAGACUCACUGCAAUGGC		OtherRNA	ShortStack
bdi-b1.0r1-3513	Brachypodium distachyon (Stiff brome) 1.0	1:14428879-14428998	+	11,641	33.25	GUCGAUAUGUCCGAGUGGUUAAGG		OtherRNA	ShortStack
bdi-b1.0r1-3535	Brachypodium distachyon (Stiff brome) 1.0	1:14509977-14510066	-	14,971	42.76	GCGCAUCUGGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-3536	Brachypodium distachyon (Stiff brome) 1.0	1:14512680-14512899	+	402	1.15	CACAAGUCCAAGGCUGAGAAGGCGAGA		OtherRNA	ShortStack
bdi-b1.0r1-3537	Brachypodium distachyon (Stiff brome) 1.0	1:14513568-14513697	+	194	0.55	AGAAAUGUGUUGGGCUAUAUC		OtherRNA	ShortStack
bdi-b1.0r1-3538	Brachypodium distachyon (Stiff brome) 1.0	1:14518324-14518803	-	2,306	6.59	GAGACAUCUUUUGUUGGACGAAGG		OtherRNA	ShortStack
bdi-b1.0r1-3546	Brachypodium distachyon (Stiff brome) 1.0	1:14550181-14550453	-	637	1.82	ACAUUGCUGAGAACGACG		OtherRNA	ShortStack
bdi-b1.0r1-3551	Brachypodium distachyon (Stiff brome) 1.0	1:14566615-14569207	.	5,320	15.20	AAGGACCUGUAGCAACUGAAGGUG		OtherRNA	ShortStack
bdi-b1.0r1-3576	Brachypodium distachyon (Stiff brome) 1.0	1:14682077-14682159	+	4,265	12.18	GCGCAUCUGGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-3585	Brachypodium distachyon (Stiff brome) 1.0	1:14734181-14734202	-	58	0.17	CAUCGGGCUCCAGGGCUAGAUGG		OtherRNA	ShortStack
bdi-b1.0r1-3586	Brachypodium distachyon (Stiff brome) 1.0	1:14736049-14736121	-	377	1.08	UUGGAAAUGUGACGGCUGGA		OtherRNA	ShortStack
bdi-b1.0r1-3587	Brachypodium distachyon (Stiff brome) 1.0	1:14736277-14736311	-	269	0.77	UCUGGACUCAAGGAAGGGC		OtherRNA	ShortStack
bdi-b1.0r1-3634	Brachypodium distachyon (Stiff brome) 1.0	1:14944732-14944914	-	14,441	41.25	GGGCAUUUGGUCUAGUGGUAUGAUUCUCGC		OtherRNA	ShortStack
bdi-b1.0r1-3646	Brachypodium distachyon (Stiff brome) 1.0	1:15000331-15000667	-	1,298	3.71	AUGUUGACGAUUGUGGAUG		OtherRNA	ShortStack
bdi-b1.0r1-3647	Brachypodium distachyon (Stiff brome) 1.0	1:15005976-15006228	-	825	2.36	CUGGAGGAUGUAGAGAUGGCAG		OtherRNA	ShortStack
bdi-b1.0r1-3681	Brachypodium distachyon (Stiff brome) 1.0	1:15135474-15135493	+	247	0.71	GAGAACUCUGCUGAAGGA		OtherRNA	ShortStack
bdi-b1.0r1-3691	Brachypodium distachyon (Stiff brome) 1.0	1:15178142-15178160	-	1,836	5.24	GGUGGCUGUAGUUUAG		OtherRNA	ShortStack
bdi-b1.0r1-3695	Brachypodium distachyon (Stiff brome) 1.0	1:15197559-15197582	+	50,278	143.62	UCUACAGUCCGACGA		OtherRNA	ShortStack
bdi-b1.0r1-3710	Brachypodium distachyon (Stiff brome) 1.0	1:15251002-15251718	.	1,232	3.52	CUUCGGAUUGUAAAGC		OtherRNA	ShortStack
bdi-b1.0r1-3718	Brachypodium distachyon (Stiff brome) 1.0	1:15268846-15269179	+	810	2.31	AAUAAUUUGAUCCAUGGACGGCAC		OtherRNA	ShortStack
bdi-b1.0r1-3722	Brachypodium distachyon (Stiff brome) 1.0	1:15284964-15285246	+	260	0.74	UUUUGUCAGGCUGCGGAUUUGAAC		OtherRNA	ShortStack
bdi-b1.0r1-3723	Brachypodium distachyon (Stiff brome) 1.0	1:15285838-15286143	+	255	0.73	AUUUGGACCUUCAGAAUGA		OtherRNA	ShortStack
bdi-b1.0r1-3724	Brachypodium distachyon (Stiff brome) 1.0	1:15287848-15287870	+	117	0.33	AAGGACAGUAGGUGCAUGCCUUG		OtherRNA	ShortStack
bdi-b1.0r1-3725	Brachypodium distachyon (Stiff brome) 1.0	1:15299810-15299983	+	190	0.54	UUGCUGUGAAUACAUGACUGGUG		OtherRNA	ShortStack
bdi-b1.0r1-3738	Brachypodium distachyon (Stiff brome) 1.0	1:15367278-15367864	-	157,207	449.06	CGUAAAGCGUCUGUAGGUGGC		OtherRNA	ShortStack
bdi-b1.0r1-3744	Brachypodium distachyon (Stiff brome) 1.0	1:15396311-15396338	+	103	0.29	AGAAGAGCCUCUGCUGGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-3745	Brachypodium distachyon (Stiff brome) 1.0	1:15396758-15397896	+	958	2.74	GUGGACUCGGUGACGAAGAAGCCGUUCG		OtherRNA	ShortStack
bdi-b1.0r1-3746	Brachypodium distachyon (Stiff brome) 1.0	1:15398991-15400772	+	1,632	4.66	ACGUGGAGCUUCUGAAGCAGA		OtherRNA	ShortStack
bdi-b1.0r1-3747	Brachypodium distachyon (Stiff brome) 1.0	1:15400884-15401905	+	1,277	3.65	UUGAAGACAAGAUCGAAGGGAU		OtherRNA	ShortStack
bdi-b1.0r1-3777	Brachypodium distachyon (Stiff brome) 1.0	1:15500164-15501216	.	3,942	11.26	UCGAGUUAGCGGCGGACGG		OtherRNA	ShortStack
bdi-b1.0r1-3804	Brachypodium distachyon (Stiff brome) 1.0	1:15628091-15628198	-	306	0.87	UAAUUUUGUUAGGUCUAGGUGCU		OtherRNA	ShortStack
bdi-b1.0r1-3816	Brachypodium distachyon (Stiff brome) 1.0	1:15695604-15695621	-	321	0.92	UUCAUCAGUCCGACGAUC		OtherRNA	ShortStack
bdi-b1.0r1-3870	Brachypodium distachyon (Stiff brome) 1.0	1:15937105-15937206	-	148,362	423.79	GGGGAUGUAGCUCAGA		OtherRNA	ShortStack
bdi-b1.0r1-3890	Brachypodium distachyon (Stiff brome) 1.0	1:16051476-16051955	-	1,762	5.03	AUGCCGAAGCUGCGGAUUU		OtherRNA	ShortStack
bdi-b1.0r1-3896	Brachypodium distachyon (Stiff brome) 1.0	1:16078487-16078581	-	852	2.43	CGGUAGGUCGGACCA	miR7642	OtherRNA	ShortStack
bdi-b1.0r1-3914	Brachypodium distachyon (Stiff brome) 1.0	1:16138681-16138961	-	8,180	23.37	AUUCACUGAGACAAAGAAC		OtherRNA	ShortStack
bdi-b1.0r1-3929	Brachypodium distachyon (Stiff brome) 1.0	1:16199125-16199207	-	15	0.04	UGAUAAGGGGCUUUGG	miR184	OtherRNA	ShortStack
bdi-b1.0r1-3938	Brachypodium distachyon (Stiff brome) 1.0	1:16228582-16228729	-	19,626	56.06	GGUGGCUGUAGUUUAGUGGUGAGAAUUCCACGUUG		OtherRNA	ShortStack
bdi-b1.0r1-3954	Brachypodium distachyon (Stiff brome) 1.0	1:16276047-16276160	-	276	0.79	CUGGGCUCAGACACCA		OtherRNA	ShortStack
bdi-b1.0r1-3956	Brachypodium distachyon (Stiff brome) 1.0	1:16287802-16288475	.	785	2.24	CUGGGCUCAGACACCA		OtherRNA	ShortStack
bdi-b1.0r1-3959	Brachypodium distachyon (Stiff brome) 1.0	1:16307652-16307947	+	1,504	4.30	UUUGAGAAGGCCCCA		OtherRNA	ShortStack
bdi-b1.0r1-3962	Brachypodium distachyon (Stiff brome) 1.0	1:16337043-16337317	-	2,255	6.44	GAGGGCGCUUUCUCUUUUUGAGAAGGCCCCA		OtherRNA	ShortStack
bdi-b1.0r1-3970	Brachypodium distachyon (Stiff brome) 1.0	1:16362278-16362656	-	682	1.95	CCAAGGGAGCCUAGGCGUUUUUGAA		OtherRNA	ShortStack
bdi-b1.0r1-3971	Brachypodium distachyon (Stiff brome) 1.0	1:16362765-16363023	-	554	1.58	CUCAACGCUCGAGAACCUGUUCAG		OtherRNA	ShortStack
bdi-b1.0r1-3972	Brachypodium distachyon (Stiff brome) 1.0	1:16363376-16363526	-	1,118	3.19	ACAGGAUGACUGGUAGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-3973	Brachypodium distachyon (Stiff brome) 1.0	1:16363889-16364051	-	380	1.09	CGAGGACCUGAAGCUCUUCGUCGGCA		OtherRNA	ShortStack
bdi-b1.0r1-3975	Brachypodium distachyon (Stiff brome) 1.0	1:16369644-16369727	-	1,477	4.22	GGCCUAUUAGCUCAGC		OtherRNA	ShortStack
bdi-b1.0r1-3979	Brachypodium distachyon (Stiff brome) 1.0	1:16380516-16380532	+	124	0.35	AUACUGUGGACGACU		OtherRNA	ShortStack
bdi-b1.0r1-3980	Brachypodium distachyon (Stiff brome) 1.0	1:16380816-16381027	-	144	0.41	GAAAUAUGAUGAUCAAGU		OtherRNA	ShortStack
bdi-b1.0r1-4001	Brachypodium distachyon (Stiff brome) 1.0	1:16459442-16459531	+	1,079	3.08	GGGCAUAUGAUGAGAAUCUGCAUCCA		OtherRNA	ShortStack
bdi-b1.0r1-4002	Brachypodium distachyon (Stiff brome) 1.0	1:16460516-16460602	+	196	0.56	UGAAACGGAAGAACCAGAAGAAGGCCUC		OtherRNA	ShortStack
bdi-b1.0r1-4010	Brachypodium distachyon (Stiff brome) 1.0	1:16496448-16496653	-	6,224	17.78	AUACCCCCCCGAUCCUAAUCCGGUUUCUUU		OtherRNA	ShortStack
bdi-b1.0r1-4050	Brachypodium distachyon (Stiff brome) 1.0	1:16774074-16774406	-	423	1.21	CUGGGAGUAGAAGAGUA		OtherRNA	ShortStack
bdi-b1.0r1-4051	Brachypodium distachyon (Stiff brome) 1.0	1:16774966-16774989	-	104	0.30	UCCGGACUAUGGUGCAGUUGCA		OtherRNA	ShortStack
bdi-b1.0r1-4052	Brachypodium distachyon (Stiff brome) 1.0	1:16790052-16790114	+	294	0.84	UUUGGAUUGAAGGGAUUC		OtherRNA	ShortStack
bdi-b1.0r1-4084	Brachypodium distachyon (Stiff brome) 1.0	1:16952829-16952920	+	926	2.65	GUCUAUGAUUUAAUGAGAUUUCUGAGGGUU		OtherRNA	ShortStack
bdi-b1.0r1-4161	Brachypodium distachyon (Stiff brome) 1.0	1:17288936-17288956	+	661	1.89	UCUACAGUCCGACGA		OtherRNA	ShortStack
bdi-b1.0r1-4162	Brachypodium distachyon (Stiff brome) 1.0	1:17291050-17291103	+	349	1.00	AGAAUGACUUGUUCUGGUUGUCU		OtherRNA	ShortStack
bdi-b1.0r1-4174	Brachypodium distachyon (Stiff brome) 1.0	1:17355876-17355959	+	297	0.85	UUGACCUUUUUGGUGAGGAGACUGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-4175	Brachypodium distachyon (Stiff brome) 1.0	1:17356501-17356625	+	525	1.50	UACAUUCAGAGCUGUG		OtherRNA	ShortStack
bdi-b1.0r1-4188	Brachypodium distachyon (Stiff brome) 1.0	1:17419719-17420314	+	1,227	3.51	GUGUUAAAGAAGACUUGUUAGU		OtherRNA	ShortStack
bdi-b1.0r1-4190	Brachypodium distachyon (Stiff brome) 1.0	1:17424187-17424293	-	979	2.80	GACGCUUUGGCCGAG		OtherRNA	ShortStack
bdi-b1.0r1-4191	Brachypodium distachyon (Stiff brome) 1.0	1:17425350-17425446	-	1,979	5.65	GACGCUUUGGCCGAGUGGUUAA		OtherRNA	ShortStack
bdi-b1.0r1-4205	Brachypodium distachyon (Stiff brome) 1.0	1:17470775-17470855	+	2,427	6.93	AUAGUUACUCUGAUAGGG		OtherRNA	ShortStack
bdi-b1.0r1-4207	Brachypodium distachyon (Stiff brome) 1.0	1:17474791-17475064	+	1,032	2.95	UCUGUCAUCUAUAAAGCAAAUAGG		OtherRNA	ShortStack
bdi-b1.0r1-4208	Brachypodium distachyon (Stiff brome) 1.0	1:17476038-17476583	+	1,493	4.27	UUGCAGGAUAAGUGUG		OtherRNA	ShortStack
bdi-b1.0r1-4209	Brachypodium distachyon (Stiff brome) 1.0	1:17476757-17476989	+	624	1.78	UUGCAGGAUAAGUGUG		OtherRNA	ShortStack
bdi-b1.0r1-4236	Brachypodium distachyon (Stiff brome) 1.0	1:17570330-17570346	+	1,810	5.17	CGAGGUGUAGCGCAGU		OtherRNA	ShortStack
bdi-b1.0r1-4238	Brachypodium distachyon (Stiff brome) 1.0	1:17577207-17577242	+	124	0.35	UGGUGUCGGCGCUGGCGCCCUGCAUCGGC		OtherRNA	ShortStack
bdi-b1.0r1-4239	Brachypodium distachyon (Stiff brome) 1.0	1:17577588-17577839	+	916	2.62	UCAUGUCUACGUAGUACU		OtherRNA	ShortStack
bdi-b1.0r1-4242	Brachypodium distachyon (Stiff brome) 1.0	1:17598112-17598126	+	173	0.49	UUGAGUAGGGAGGCGUG		OtherRNA	ShortStack
bdi-b1.0r1-4254	Brachypodium distachyon (Stiff brome) 1.0	1:17660887-17661430	.	3,396	9.70	AACGGAGUAGAGCAGUU		OtherRNA	ShortStack
bdi-b1.0r1-4266	Brachypodium distachyon (Stiff brome) 1.0	1:17689888-17689976	+	2,058	5.88	GUCGUUGUAGUAUAGUGGUAAGUAUUCCCGCC	miR6300	OtherRNA	ShortStack
bdi-b1.0r1-4290	Brachypodium distachyon (Stiff brome) 1.0	1:17788842-17789652	+	9,333	26.66	AUGGGUCGAACCGGACAGAAAAGC		OtherRNA	ShortStack
bdi-b1.0r1-4292	Brachypodium distachyon (Stiff brome) 1.0	1:17795503-17795528	+	344	0.98	UUCUGAUGAUGGGUUAACUGAAGAUG		OtherRNA	ShortStack
bdi-b1.0r1-4310	Brachypodium distachyon (Stiff brome) 1.0	1:17870877-17870955	+	3,052	8.72	GCUGGAAUAGCUCAGUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-4325	Brachypodium distachyon (Stiff brome) 1.0	1:17944962-17945788	+	31,618	90.32	AUACAAGCGUUGUGCUGCUAGGC		OtherRNA	ShortStack
bdi-b1.0r1-4326	Brachypodium distachyon (Stiff brome) 1.0	1:17946077-17946641	.	1,286	3.67	UGGACAAUUUUGAAAUCAGGC		OtherRNA	ShortStack
bdi-b1.0r1-4352	Brachypodium distachyon (Stiff brome) 1.0	1:18015016-18015043	+	3,179	9.08	CGGGUGUUGUAGACA		OtherRNA	ShortStack
bdi-b1.0r1-4366	Brachypodium distachyon (Stiff brome) 1.0	1:18060234-18061025	-	7,381	21.08	CCGUCGUAGUCUAGG		OtherRNA	ShortStack
bdi-b1.0r1-4430	Brachypodium distachyon (Stiff brome) 1.0	1:18349027-18350632	+	6,466	18.47	AUAGACGAUAUUCACUGGACCGGC		OtherRNA	ShortStack
bdi-b1.0r1-4431	Brachypodium distachyon (Stiff brome) 1.0	1:18350955-18351683	+	3,000	8.57	AAGAAUGUUAGACCAUAAAGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-4435	Brachypodium distachyon (Stiff brome) 1.0	1:18369609-18370186	+	563	1.61	CUAAUUAAAACGUUGUGAUUGCAG		OtherRNA	ShortStack
bdi-MIR7778-m1	Brachypodium distachyon (Stiff brome) 1.0	1:18369831-18369977	+	303	0.87	CUGCGCCGCGACUUUCGGACG	miR7778	OtherRNA	miRBase21-BestBlastHit
bdi-b1.0r1-4442	Brachypodium distachyon (Stiff brome) 1.0	1:18390576-18391067	-	896	2.56	AACUGCAUACUCCGGGAACAUGGC		OtherRNA	ShortStack
bdi-b1.0r1-4472	Brachypodium distachyon (Stiff brome) 1.0	1:18542486-18542635	.	298	0.85	AGUACUCAAGGCUCUUUAUUUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-4514	Brachypodium distachyon (Stiff brome) 1.0	1:18707186-18707205	-	548	1.57	UUAGCGGCGGACGGGUGA		OtherRNA	ShortStack
bdi-b1.0r1-4515	Brachypodium distachyon (Stiff brome) 1.0	1:18711838-18711853	+	260	0.74	AUUUCUCGGAAUGCC		OtherRNA	ShortStack
bdi-b1.0r1-4589	Brachypodium distachyon (Stiff brome) 1.0	1:18992692-18993066	-	1,982	5.66	GGGGAGAAUGGACUGGAUGAUGGU		OtherRNA	ShortStack
bdi-b1.0r1-4590	Brachypodium distachyon (Stiff brome) 1.0	1:18993104-18993316	-	523	1.49	AGAAGAUCAAGGAGCUGCGC		OtherRNA	ShortStack
bdi-b1.0r1-4591	Brachypodium distachyon (Stiff brome) 1.0	1:18993425-18994101	-	1,979	5.65	UUGAUUAAUUUUUGUGCGUGCGUAG		OtherRNA	ShortStack
bdi-b1.0r1-4617	Brachypodium distachyon (Stiff brome) 1.0	1:19109064-19109191	+	1,043	2.98	UGGAACGAUACAGAGAAGAUUAGC		OtherRNA	ShortStack
bdi-b1.0r1-4623	Brachypodium distachyon (Stiff brome) 1.0	1:19135725-19136144	-	365	1.04	UACGCCACUCUUUAGCUGAAUUGCAA		OtherRNA	ShortStack
bdi-b1.0r1-4624	Brachypodium distachyon (Stiff brome) 1.0	1:19137486-19137677	-	420	1.20	AGGAGAUUGUAGAUC	miR7813	OtherRNA	ShortStack
bdi-b1.0r1-4696	Brachypodium distachyon (Stiff brome) 1.0	1:19397147-19397339	.	612	1.75	GCCACCGAAGCCUAAGACU		OtherRNA	ShortStack
bdi-b1.0r1-4698	Brachypodium distachyon (Stiff brome) 1.0	1:19408430-19409170	.	1,707	4.88	AUUGGACGGAUGACCUGAAAAGAA		OtherRNA	ShortStack
bdi-b1.0r1-4711	Brachypodium distachyon (Stiff brome) 1.0	1:19461407-19461424	+	256	0.73	GUUAGCGGAUGACCU		OtherRNA	ShortStack
bdi-b1.0r1-4748	Brachypodium distachyon (Stiff brome) 1.0	1:19626847-19627019	-	3,472	9.92	GUUGAUAUGGCCGAG		OtherRNA	ShortStack
bdi-b1.0r1-4753	Brachypodium distachyon (Stiff brome) 1.0	1:19674518-19674628	+	13,990	39.96	UGGACUUGUAUUGGUCGUCGAGUACC		OtherRNA	ShortStack
bdi-b1.0r1-4792	Brachypodium distachyon (Stiff brome) 1.0	1:19833625-19833708	+	412	1.18	UCUGAAGUUGUCCAAGACCU		OtherRNA	ShortStack
bdi-b1.0r1-4828	Brachypodium distachyon (Stiff brome) 1.0	1:20000519-20001752	-	3,410	9.74	ACGAGCUGUGGUACGGGCCAGACCGG		OtherRNA	ShortStack
bdi-b1.0r1-4844	Brachypodium distachyon (Stiff brome) 1.0	1:20063445-20063515	+	795	2.27	GCGUUUGUAGUCCAACGGU		OtherRNA	ShortStack
bdi-b1.0r1-4867	Brachypodium distachyon (Stiff brome) 1.0	1:20112777-20114055	+	5,588	15.96	AGGACGACGUAUGAAUUCUGAUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-4877	Brachypodium distachyon (Stiff brome) 1.0	1:20148035-20148066	+	243	0.69	AUAUCGAACUGUGAAGUUAAACUAAU		OtherRNA	ShortStack
bdi-b1.0r1-4881	Brachypodium distachyon (Stiff brome) 1.0	1:20157775-20157838	-	352	1.01	CGACGAACGAUUUGAAC		OtherRNA	ShortStack
bdi-b1.0r1-4896	Brachypodium distachyon (Stiff brome) 1.0	1:20234635-20234935	-	607	1.73	AGACCGACUUCAGGACCGGCG		OtherRNA	ShortStack
bdi-b1.0r1-4897	Brachypodium distachyon (Stiff brome) 1.0	1:20235375-20235483	-	388	1.11	UCGCCAAGGACAAGCUCGGCAAC		OtherRNA	ShortStack
bdi-b1.0r1-4986	Brachypodium distachyon (Stiff brome) 1.0	1:20566813-20566994	+	786	2.25	AGAGGACCAAGGACGCCGUCAAGU		OtherRNA	ShortStack
bdi-b1.0r1-4987	Brachypodium distachyon (Stiff brome) 1.0	1:20568034-20568055	+	108	0.31	UUGGGAGUUCUGUGUUGGACCU		OtherRNA	ShortStack
bdi-MIR5067-m1	Brachypodium distachyon (Stiff brome) 1.0	1:20615436-20615521	-	12	0.03	AUACUCCCUCCUAUCCAUAUUAGUUG		OtherRNA	miRBase21-BestBlastHit
bdi-b1.0r1-5003	Brachypodium distachyon (Stiff brome) 1.0	1:20616187-20616256	-	234	0.67	UGUUCUUACAUGGCAUGUGGCUUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-5008	Brachypodium distachyon (Stiff brome) 1.0	1:20645949-20646096	-	109	0.31	GUGUGGACAAGGAUUAG		OtherRNA	ShortStack
bdi-b1.0r1-5009	Brachypodium distachyon (Stiff brome) 1.0	1:20646735-20646834	-	264	0.75	UCGGAACACUGUAGCCAUGGC		OtherRNA	ShortStack
bdi-b1.0r1-5015	Brachypodium distachyon (Stiff brome) 1.0	1:20664901-20665639	-	1,811	5.17	AUGGCCGUACGUCAUGAACGACCU		OtherRNA	ShortStack
bdi-b1.0r1-5016	Brachypodium distachyon (Stiff brome) 1.0	1:20665734-20665994	-	404	1.15	GAGAGAUCGAUCGUUACCUCC		OtherRNA	ShortStack
bdi-b1.0r1-5018	Brachypodium distachyon (Stiff brome) 1.0	1:20672759-20672778	+	4,038	11.53	CCCACUUCUGACACCA	miR2478	OtherRNA	ShortStack
bdi-b1.0r1-5026	Brachypodium distachyon (Stiff brome) 1.0	1:20701829-20701915	+	908	2.59	GUCAAGAUGGCCGAGUUGGU		OtherRNA	ShortStack
bdi-b1.0r1-5109	Brachypodium distachyon (Stiff brome) 1.0	1:20963985-20964545	-	2,036	5.82	UGGACGCCUGAACAAACGGCCU		OtherRNA	ShortStack
bdi-b1.0r1-5110	Brachypodium distachyon (Stiff brome) 1.0	1:20964588-20965328	-	1,803	5.15	CCGGGAUGAAGGCGCUUGACAUGA		OtherRNA	ShortStack
bdi-b1.0r1-5172	Brachypodium distachyon (Stiff brome) 1.0	1:21113624-21113743	-	914	2.61	AUAUUUCCUGAGGUC		OtherRNA	ShortStack
bdi-b1.0r1-5246	Brachypodium distachyon (Stiff brome) 1.0	1:21392402-21393348	+	1,286	3.67	GAGGACGAGCUCUUCAAGCU		OtherRNA	ShortStack
bdi-b1.0r1-5247	Brachypodium distachyon (Stiff brome) 1.0	1:21393461-21393490	+	59	0.17	CAAAAAAGGAUGUGUCUGA		OtherRNA	ShortStack
bdi-b1.0r1-5265	Brachypodium distachyon (Stiff brome) 1.0	1:21459811-21460302	-	34,537	98.65	GCCUUGAUGGUGAAAUGGUAGACACGCGAGACUCA		OtherRNA	ShortStack
bdi-b1.0r1-5266	Brachypodium distachyon (Stiff brome) 1.0	1:21460551-21461230	.	8,910	25.45	UGAGAAGCUUCUGGGCCGGU		OtherRNA	ShortStack
bdi-b1.0r1-5283	Brachypodium distachyon (Stiff brome) 1.0	1:21524398-21524714	.	836	2.39	GUGGGUGUAGCUCAUA		OtherRNA	ShortStack
bdi-b1.0r1-5297	Brachypodium distachyon (Stiff brome) 1.0	1:21567420-21567626	+	158	0.45	UGCACUGAACUUUGUGUUUUCAG		OtherRNA	ShortStack
bdi-b1.0r1-5298	Brachypodium distachyon (Stiff brome) 1.0	1:21568432-21568471	+	149	0.43	UUAGCAUAAGAGAGGAUUGUAAG		OtherRNA	ShortStack
bdi-b1.0r1-5313	Brachypodium distachyon (Stiff brome) 1.0	1:21634605-21635058	+	352,193	1,006.03	GUCAGGAUAGCUCAGUUGGUAGAGCAGAGGACU		OtherRNA	ShortStack
bdi-b1.0r1-5317	Brachypodium distachyon (Stiff brome) 1.0	1:21653336-21653472	-	8,017	22.90	GGUGGCUGUAGUUUAGUGGUG		OtherRNA	ShortStack
bdi-b1.0r1-5327	Brachypodium distachyon (Stiff brome) 1.0	1:21671482-21672126	+	539	1.54	GGGGAUGUAUCUCAAA		OtherRNA	ShortStack
bdi-b1.0r1-5334	Brachypodium distachyon (Stiff brome) 1.0	1:21683944-21684147	.	307	0.88	CCCACUGUCAACACCA		OtherRNA	ShortStack
bdi-b1.0r1-5340	Brachypodium distachyon (Stiff brome) 1.0	1:21728294-21728311	-	768	2.19	ACCAACGAUUUGAAC		OtherRNA	ShortStack
bdi-b1.0r1-5437	Brachypodium distachyon (Stiff brome) 1.0	1:22067583-22067801	.	235	0.67	UUAUCGGUCAUGAUUGGA		OtherRNA	ShortStack
bdi-b1.0r1-5451	Brachypodium distachyon (Stiff brome) 1.0	1:22128323-22128630	+	1,464	4.18	UUCCUCUAAGAGGAGGGUCCC		OtherRNA	ShortStack
bdi-b1.0r1-5517	Brachypodium distachyon (Stiff brome) 1.0	1:22395388-22395482	-	165	0.47	CUGGCAAGAAGUUCCG		OtherRNA	ShortStack
bdi-b1.0r1-5575	Brachypodium distachyon (Stiff brome) 1.0	1:22649116-22649483	.	769	2.20	UAACCUGGCUCUGAUACCA	miR8155	OtherRNA	ShortStack
bdi-b1.0r1-5599	Brachypodium distachyon (Stiff brome) 1.0	1:22864136-22864159	+	43	0.12	ACAGUAUUGUAGCGAUCUCCGACC		OtherRNA	ShortStack
bdi-b1.0r1-5623	Brachypodium distachyon (Stiff brome) 1.0	1:23007532-23007714	.	728	2.08	GGUGGCUGUAGUUUA		OtherRNA	ShortStack
bdi-b1.0r1-5704	Brachypodium distachyon (Stiff brome) 1.0	1:23220924-23221902	+	895	2.56	GAGCUCAUCGGUGAGAUCCUCAGA		OtherRNA	ShortStack
bdi-b1.0r1-5746	Brachypodium distachyon (Stiff brome) 1.0	1:23355774-23355887	+	122	0.35	AAGCGAACCCGGGGAAC		OtherRNA	ShortStack
bdi-b1.0r1-5751	Brachypodium distachyon (Stiff brome) 1.0	1:23366250-23366301	+	150	0.43	ACAAUGUAGAUAAGG	miR401	OtherRNA	ShortStack
bdi-b1.0r1-5761	Brachypodium distachyon (Stiff brome) 1.0	1:23402719-23403099	+	2,417	6.90	AUGCAAGUCGAGCGGAUGA		OtherRNA	ShortStack
bdi-b1.0r1-5777	Brachypodium distachyon (Stiff brome) 1.0	1:23489530-23490343	.	2,715	7.76	CCGGCGACGGAACCA		OtherRNA	ShortStack
bdi-b1.0r1-5790	Brachypodium distachyon (Stiff brome) 1.0	1:23551960-23552530	+	239,500	684.13	UGGUGAACUAUGCCUGAGCGG		OtherRNA	ShortStack
bdi-b1.0r1-5791	Brachypodium distachyon (Stiff brome) 1.0	1:23553100-23553384	+	133,991	382.74	UGGAAUCGGUUCAGCCGGAGGUAGG		OtherRNA	ShortStack
bdi-b1.0r1-5792	Brachypodium distachyon (Stiff brome) 1.0	1:23553500-23553985	+	313,784	896.32	UCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGC		OtherRNA	ShortStack
bdi-b1.0r1-5793	Brachypodium distachyon (Stiff brome) 1.0	1:23554150-23554430	+	83,101	237.38	UUAGAUCUUCGGAGUUUGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-5794	Brachypodium distachyon (Stiff brome) 1.0	1:23554700-23555014	+	643,760	1,838.88	CACGUCGCACGGAUUCGU		OtherRNA	ShortStack
bdi-b1.0r1-5797	Brachypodium distachyon (Stiff brome) 1.0	1:23556320-23557264	+	15,746	44.98	GGACACCUCGCUCCCGCUCUUG		OtherRNA	ShortStack
bdi-b1.0r1-5798	Brachypodium distachyon (Stiff brome) 1.0	1:23557350-23557678	+	199,442	569.70	CGGAGAGGGAGCCUGAGAAACGG		OtherRNA	ShortStack
bdi-b1.0r1-5799	Brachypodium distachyon (Stiff brome) 1.0	1:23557950-23558224	+	21,610	61.73	AUAACAUCAUAGGAUUCCGG		OtherRNA	ShortStack
bdi-b1.0r1-5800	Brachypodium distachyon (Stiff brome) 1.0	1:23558750-23559353	+	5,526,560	15,786.48	GACACGACUCUCGGCAACGGAUAU		OtherRNA	ShortStack
bdi-b1.0r1-5801	Brachypodium distachyon (Stiff brome) 1.0	1:23559874-23560970	+	209,199	597.57	ACUGUUGUCGGCCGUGC		OtherRNA	ShortStack
bdi-b1.0r1-5814	Brachypodium distachyon (Stiff brome) 1.0	1:23600830-23600899	+	701	2.00	UUAGAGCAUUGAGAGGACC		OtherRNA	ShortStack
bdi-b1.0r1-5830	Brachypodium distachyon (Stiff brome) 1.0	1:23645444-23645573	.	213	0.61	GAACGAACAUUUGAAC		OtherRNA	ShortStack
bdi-b1.0r1-5858	Brachypodium distachyon (Stiff brome) 1.0	1:23803751-23803990	+	398	1.14	UUGGAUUGGAUUCUGGAGAUGG		OtherRNA	ShortStack
bdi-b1.0r1-5892	Brachypodium distachyon (Stiff brome) 1.0	1:23951807-23951985	+	19,394	55.40	GGGUGUUUGGUCUAGUGGUAUGAUUCUCGC		OtherRNA	ShortStack
bdi-b1.0r1-5913	Brachypodium distachyon (Stiff brome) 1.0	1:24044359-24044402	-	68	0.19	AAUCCUUAGGUCGGACCA		OtherRNA	ShortStack
bdi-b1.0r1-5919	Brachypodium distachyon (Stiff brome) 1.0	1:24053300-24053485	-	1,297	3.71	UUUGUUGGACGGUGGGAGUAC		OtherRNA	ShortStack
bdi-b1.0r1-5923	Brachypodium distachyon (Stiff brome) 1.0	1:24062122-24062254	.	243	0.69	UAACCUCUGAUCAAAAAGA		OtherRNA	ShortStack
bdi-b1.0r1-5930	Brachypodium distachyon (Stiff brome) 1.0	1:24084855-24085311	-	513	1.47	AUUUAGCGACUAUAUGAAUGAU		OtherRNA	ShortStack
bdi-b1.0r1-5931	Brachypodium distachyon (Stiff brome) 1.0	1:24087063-24087739	-	1,196	3.42	GCACCAGACGGACGUCUCGGCG		OtherRNA	ShortStack
bdi-b1.0r1-5966	Brachypodium distachyon (Stiff brome) 1.0	1:24219410-24220472	+	953	2.72	GGCCAAUUCCACCACCAAGAUCGC		OtherRNA	ShortStack
bdi-b1.0r1-6016	Brachypodium distachyon (Stiff brome) 1.0	1:24421625-24422803	+	3,134	8.95	UUAAUAUGAGACGGAGGAAGUAGC		OtherRNA	ShortStack
bdi-b1.0r1-6086	Brachypodium distachyon (Stiff brome) 1.0	1:24807722-24807822	-	4,367	12.47	GGGCGUUUGGUCUAGUGGUAUGAUUCUCGC		OtherRNA	ShortStack
bdi-b1.0r1-6087	Brachypodium distachyon (Stiff brome) 1.0	1:24815194-24815291	-	267	0.76	UUGAGGCUGAAGAAUUCAAGAACGGU		OtherRNA	ShortStack
bdi-b1.0r1-6167	Brachypodium distachyon (Stiff brome) 1.0	1:25206571-25206790	-	451	1.29	AGGACUUGGUAGUGGCUAGCC		OtherRNA	ShortStack
bdi-b1.0r1-6186	Brachypodium distachyon (Stiff brome) 1.0	1:25266751-25266903	-	7,230	20.65	GCCUCCGUAGCAUAGUGGU		OtherRNA	ShortStack
bdi-b1.0r1-6187	Brachypodium distachyon (Stiff brome) 1.0	1:25268748-25268788	-	139	0.40	AAGGGUGCUCCAAUGGACAAGA		OtherRNA	ShortStack
bdi-b1.0r1-6188	Brachypodium distachyon (Stiff brome) 1.0	1:25269021-25269058	-	251	0.72	AGGAUGAUGAAGAGGAAUCUGA		OtherRNA	ShortStack
bdi-b1.0r1-6193	Brachypodium distachyon (Stiff brome) 1.0	1:25300514-25300746	+	853	2.44	UCAGACCUCUGGGCCAGAGC		OtherRNA	ShortStack
bdi-b1.0r1-6215	Brachypodium distachyon (Stiff brome) 1.0	1:25388974-25389558	+	397	1.13	CGCGACCAACAGGCCUGAUGU		OtherRNA	ShortStack
bdi-b1.0r1-6216	Brachypodium distachyon (Stiff brome) 1.0	1:25390747-25391253	+	949	2.71	AUGGCUGUAGCACUUGGUGGCAG		OtherRNA	ShortStack
bdi-b1.0r1-6217	Brachypodium distachyon (Stiff brome) 1.0	1:25391420-25391461	+	44	0.13	CAACUGGGGCUUCCAACGAC		OtherRNA	ShortStack
bdi-b1.0r1-6218	Brachypodium distachyon (Stiff brome) 1.0	1:25392050-25392367	+	401	1.15	UGUUUGUCGCUUAAGGAGGCUCAUC		OtherRNA	ShortStack
bdi-b1.0r1-6225	Brachypodium distachyon (Stiff brome) 1.0	1:25402983-25403002	+	248	0.71	ACUUAGACUUAGAACACUAACAGG		OtherRNA	ShortStack
bdi-b1.0r1-6227	Brachypodium distachyon (Stiff brome) 1.0	1:25410362-25410456	+	193,876	553.80	UAAUUCAUGAUCUGG		OtherRNA	ShortStack
bdi-b1.0r1-6232	Brachypodium distachyon (Stiff brome) 1.0	1:25441397-25441415	+	767	2.19	UUAAUGCGGUACGUGAG		OtherRNA	ShortStack
bdi-b1.0r1-6255	Brachypodium distachyon (Stiff brome) 1.0	1:25540997-25541497	-	748	2.14	AGCCUGGACCUGAGCGAAGAUGCAACCG		OtherRNA	ShortStack
bdi-b1.0r1-6256	Brachypodium distachyon (Stiff brome) 1.0	1:25541567-25541966	-	866	2.47	UGGAAGAAGGCUCUUGA		OtherRNA	ShortStack
bdi-b1.0r1-6257	Brachypodium distachyon (Stiff brome) 1.0	1:25542141-25542510	-	293	0.84	AUGAAGUCAGGGCAAAAGGA		OtherRNA	ShortStack
bdi-b1.0r1-6258	Brachypodium distachyon (Stiff brome) 1.0	1:25542598-25542764	-	329	0.94	AACAAGGACAAGACAG		OtherRNA	ShortStack
bdi-b1.0r1-6259	Brachypodium distachyon (Stiff brome) 1.0	1:25543188-25543354	-	351	1.00	AUGGGAGCUUCUGAACGAUAUGAAG		OtherRNA	ShortStack
bdi-b1.0r1-6260	Brachypodium distachyon (Stiff brome) 1.0	1:25543963-25544073	-	243	0.69	CUAAGGAAUACUUGGAAGAAGACAAA		OtherRNA	ShortStack
bdi-MIR9492-m1	Brachypodium distachyon (Stiff brome) 1.0	1:25584132-25584222	-	249	0.71	UAUCUACUCUGUCAUGGUAUC	miR9492	OtherRNA	miRBase21-BestBlastHit
bdi-b1.0r1-6266	Brachypodium distachyon (Stiff brome) 1.0	1:25584838-25585480	-	1,125	3.21	CGCAGCUCGGACGCGAAGAUGGUGA		OtherRNA	ShortStack
bdi-b1.0r1-6272	Brachypodium distachyon (Stiff brome) 1.0	1:25605156-25605519	-	167	0.48	CGGAACAUAAUGGAAGACUUGACAC		OtherRNA	ShortStack
bdi-b1.0r1-6273	Brachypodium distachyon (Stiff brome) 1.0	1:25605890-25606099	-	152	0.43	UCUGUUAAACCUAGUGCAAGCGGC		OtherRNA	ShortStack
bdi-b1.0r1-6274	Brachypodium distachyon (Stiff brome) 1.0	1:25608692-25608719	-	197	0.56	ACUAUUGCAGAACAAUG		OtherRNA	ShortStack
bdi-b1.0r1-6275	Brachypodium distachyon (Stiff brome) 1.0	1:25611091-25611284	-	82	0.23	GAGACAGUUUUGAACCUGAAAGAGAAGAUAG		OtherRNA	ShortStack
bdi-b1.0r1-6284	Brachypodium distachyon (Stiff brome) 1.0	1:25655174-25655190	+	105	0.30	AGUGACUGUCUAAAAAG		OtherRNA	ShortStack
bdi-b1.0r1-6302	Brachypodium distachyon (Stiff brome) 1.0	1:25698275-25699875	.	4,424	12.64	UCGCACGGAUUCGUA		OtherRNA	ShortStack
bdi-b1.0r1-6330	Brachypodium distachyon (Stiff brome) 1.0	1:25786037-25786452	+	57,746	164.95	CUUCCAACGGUGGAAGGAUAACGG		OtherRNA	ShortStack
bdi-b1.0r1-6348	Brachypodium distachyon (Stiff brome) 1.0	1:25878227-25878780	+	696	1.99	CCAGGACAACUCUUGAGGC		OtherRNA	ShortStack
bdi-b1.0r1-6349	Brachypodium distachyon (Stiff brome) 1.0	1:25879081-25879323	+	973	2.78	GAUGACUGUUGGCAUUGCACU		OtherRNA	ShortStack
bdi-b1.0r1-6350	Brachypodium distachyon (Stiff brome) 1.0	1:25880114-25880315	+	247	0.71	GAAGAGUGUUGGCAGUGCGGCUCUCAAG		OtherRNA	ShortStack
bdi-b1.0r1-6405	Brachypodium distachyon (Stiff brome) 1.0	1:26133524-26134370	.	898	2.57	CAAUGAAAUCGAGUA	miR5921	OtherRNA	ShortStack
bdi-b1.0r1-6431	Brachypodium distachyon (Stiff brome) 1.0	1:26219923-26219941	-	475	1.36	UGAAGCUGCCAGCAUCUG		OtherRNA	ShortStack
bdi-b1.0r1-6433	Brachypodium distachyon (Stiff brome) 1.0	1:26226918-26227062	-	968	2.77	UUAUAUGAUUGAACAAAGGCGAAUCUGAGCCCA		OtherRNA	ShortStack
bdi-b1.0r1-6434	Brachypodium distachyon (Stiff brome) 1.0	1:26227416-26227715	-	2,037	5.82	ACGAGCAAAGGCGAAUCUGAGCCCA		OtherRNA	ShortStack
bdi-b1.0r1-6435	Brachypodium distachyon (Stiff brome) 1.0	1:26228653-26228901	-	695	1.99	ACGAGCAAAGGCGAAUCUGAGCCCC		OtherRNA	ShortStack
bdi-b1.0r1-6436	Brachypodium distachyon (Stiff brome) 1.0	1:26229626-26229729	-	3,012	8.60	CGUAGAUCUGAGCCGC		OtherRNA	ShortStack
bdi-b1.0r1-6441	Brachypodium distachyon (Stiff brome) 1.0	1:26244230-26244262	-	354	1.01	GGCAAUGAUGAACUUUUCUGAAA		OtherRNA	ShortStack
bdi-b1.0r1-6442	Brachypodium distachyon (Stiff brome) 1.0	1:26244587-26244917	-	18,000	51.42	GGGCGAUGAUGUUGAACUGUGGCUGAAAU		OtherRNA	ShortStack
bdi-b1.0r1-6443	Brachypodium distachyon (Stiff brome) 1.0	1:26251065-26251160	+	1,752	5.01	GUGGUCGUGCCGGAG		OtherRNA	ShortStack
bdi-b1.0r1-6489	Brachypodium distachyon (Stiff brome) 1.0	1:26560503-26560586	+	23,139	66.10	UCCGUCGUAGUCUAGG		OtherRNA	ShortStack
bdi-b1.0r1-6496	Brachypodium distachyon (Stiff brome) 1.0	1:26573374-26573528	+	16,576	47.35	UCCGUCGUAGUCUAGG		OtherRNA	ShortStack
bdi-b1.0r1-6512	Brachypodium distachyon (Stiff brome) 1.0	1:26635150-26635276	+	498	1.42	GAAUGUGCUGUAGUAGCUUAGUGGUAUA		OtherRNA	ShortStack
bdi-b1.0r1-6531	Brachypodium distachyon (Stiff brome) 1.0	1:26711986-26712029	-	252	0.72	UGACAGAAGAGAGUGACAC		OtherRNA	ShortStack
bdi-b1.0r1-6580	Brachypodium distachyon (Stiff brome) 1.0	1:26942718-26942862	+	1,343	3.84	AUGGGACUGAAGUUUACCUCUUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-6617	Brachypodium distachyon (Stiff brome) 1.0	1:27069546-27069586	+	1,587	4.53	GUGACUGACAUAUUUCUGGUGCAG		OtherRNA	ShortStack
bdi-b1.0r1-6629	Brachypodium distachyon (Stiff brome) 1.0	1:27100248-27100391	-	284	0.81	UCAGGACCCCACUACUCG		OtherRNA	ShortStack
bdi-b1.0r1-6665	Brachypodium distachyon (Stiff brome) 1.0	1:27295453-27295716	.	3,205	9.16	AGUUAAUGGAUGAAACUGAACAUC		OtherRNA	ShortStack
bdi-b1.0r1-6687	Brachypodium distachyon (Stiff brome) 1.0	1:27402622-27402698	+	21,938	62.67	AUGGAUGAUGCAAAAUCGAGUCUCUGAUGC		OtherRNA	ShortStack
bdi-b1.0r1-6688	Brachypodium distachyon (Stiff brome) 1.0	1:27402931-27403009	+	7,982	22.80	AACUGAUGAUGAACU		OtherRNA	ShortStack
bdi-b1.0r1-6732	Brachypodium distachyon (Stiff brome) 1.0	1:27565185-27565265	.	174	0.50	UCUUGCAGAUCGGGAC		OtherRNA	ShortStack
bdi-b1.0r1-6757	Brachypodium distachyon (Stiff brome) 1.0	1:27643054-27643373	-	352	1.01	UCCCUGAUUUGUUUCAAAGCG		OtherRNA	ShortStack
bdi-b1.0r1-6758	Brachypodium distachyon (Stiff brome) 1.0	1:27644137-27644438	-	498	1.42	UGGAUUUAGUGGAGCAGACUUGGCAA		OtherRNA	ShortStack
bdi-b1.0r1-6759	Brachypodium distachyon (Stiff brome) 1.0	1:27644736-27645371	-	547	1.56	AUUGACUGAGAUGGAUGGG		OtherRNA	ShortStack
bdi-b1.0r1-6760	Brachypodium distachyon (Stiff brome) 1.0	1:27645446-27645612	-	192	0.55	UUGAGGGAGAAGAAUAUUGAU		OtherRNA	ShortStack
bdi-b1.0r1-6771	Brachypodium distachyon (Stiff brome) 1.0	1:27694991-27695117	+	787	2.25	AAGGGGUGUUUUCUCUUUG		OtherRNA	ShortStack
bdi-b1.0r1-6780	Brachypodium distachyon (Stiff brome) 1.0	1:27746535-27746554	-	161	0.46	UGACAGAAGAGAGUGAGAC		OtherRNA	ShortStack
bdi-b1.0r1-6796	Brachypodium distachyon (Stiff brome) 1.0	1:27800830-27801178	.	3,514	10.04	UGAGGAACUACUGAACUCAAUC	miR5538	OtherRNA	ShortStack
bdi-b1.0r1-6797	Brachypodium distachyon (Stiff brome) 1.0	1:27801258-27801561	-	1,166	3.33	UGUAUGAGACAAAUG		OtherRNA	ShortStack
bdi-b1.0r1-6798	Brachypodium distachyon (Stiff brome) 1.0	1:27801753-27802062	-	4,518	12.91	AUACUGGAACUCAGAGC		OtherRNA	ShortStack
bdi-b1.0r1-6799	Brachypodium distachyon (Stiff brome) 1.0	1:27803335-27803567	.	85	0.24	UGCUAGAGGAACGAAUUUUCAA		OtherRNA	ShortStack
bdi-b1.0r1-6800	Brachypodium distachyon (Stiff brome) 1.0	1:27803856-27804015	.	9,636	27.53	AAGAGUGAAGACUAGUAGA		OtherRNA	ShortStack
bdi-b1.0r1-6801	Brachypodium distachyon (Stiff brome) 1.0	1:27804907-27806122	-	1,787	5.11	UGACAGGCAAGACCAUUACUCUGGA		OtherRNA	ShortStack
bdi-b1.0r1-6802	Brachypodium distachyon (Stiff brome) 1.0	1:27806220-27806355	-	239	0.68	AAAGAUCCAGGACAAGGAGGGCAU		OtherRNA	ShortStack
bdi-b1.0r1-6803	Brachypodium distachyon (Stiff brome) 1.0	1:27807147-27807353	-	135	0.39	UUGUAGAUCGAAGUGCGCAU		OtherRNA	ShortStack
bdi-b1.0r1-6805	Brachypodium distachyon (Stiff brome) 1.0	1:27814409-27814573	-	595	1.70	AUUCAUGACUGAAACACCGGUUACAGAUCUGAGC		OtherRNA	ShortStack
bdi-b1.0r1-6806	Brachypodium distachyon (Stiff brome) 1.0	1:27814765-27815330	-	6,657	19.02	CACGGGCAAGUCUGAGGUUC		OtherRNA	ShortStack
bdi-b1.0r1-6807	Brachypodium distachyon (Stiff brome) 1.0	1:27815408-27816158	-	19,773	56.48	AUAGAUCUGAGCCAU		OtherRNA	ShortStack
bdi-b1.0r1-6880	Brachypodium distachyon (Stiff brome) 1.0	1:28072217-28072554	-	7,262	20.74	GCGGGAGAUUCUGGGUU		OtherRNA	ShortStack
bdi-b1.0r1-6888	Brachypodium distachyon (Stiff brome) 1.0	1:28120377-28121559	+	1,846	5.27	GACACGAUCGACAAUGUGAAGGCA		OtherRNA	ShortStack
bdi-b1.0r1-6889	Brachypodium distachyon (Stiff brome) 1.0	1:28121675-28121949	+	158	0.45	UUAUGAAUUUGUGAACCUGA		OtherRNA	ShortStack
bdi-b1.0r1-6961	Brachypodium distachyon (Stiff brome) 1.0	1:28326302-28327483	+	3,528	10.08	CAAGAUCCAGGACAAGGAAGGC		OtherRNA	ShortStack
bdi-b1.0r1-6978	Brachypodium distachyon (Stiff brome) 1.0	1:28384324-28385047	+	5,627	16.07	GGCAUUACGAUCGUUGGAUUUCAAA		OtherRNA	ShortStack
bdi-b1.0r1-6999	Brachypodium distachyon (Stiff brome) 1.0	1:28478618-28479626	+	130,881	373.86	AAGGGUGCUGAGAAUACUUUGAAUCUGACAC		OtherRNA	ShortStack
bdi-b1.0r1-7000	Brachypodium distachyon (Stiff brome) 1.0	1:28479716-28480431	+	14,787	42.24	CCUUCCUUGGAUGUCUGAGCCA		OtherRNA	ShortStack
bdi-b1.0r1-7056	Brachypodium distachyon (Stiff brome) 1.0	1:28627970-28628285	.	1,600	4.57	AAAAAAAGGUAGAACCAAACACGC		OtherRNA	ShortStack
bdi-b1.0r1-7058	Brachypodium distachyon (Stiff brome) 1.0	1:28637859-28638002	-	101	0.29	GACGUCAUCGCGAAGAUUGUAGGC		OtherRNA	ShortStack
bdi-b1.0r1-7084	Brachypodium distachyon (Stiff brome) 1.0	1:28697467-28697647	-	308	0.88	UCGCUACCUGAAGAAGACUGGCGAA		OtherRNA	ShortStack
bdi-b1.0r1-7085	Brachypodium distachyon (Stiff brome) 1.0	1:28697814-28698029	-	363	1.04	AUGCAUGUUAGGGUCGGGGACACAGUGCAAGUC		OtherRNA	ShortStack
bdi-b1.0r1-7127	Brachypodium distachyon (Stiff brome) 1.0	1:28886411-28886800	+	1,725	4.93	ACGGACUUUGUAUCGACUAAAGUAUA		OtherRNA	ShortStack
bdi-b1.0r1-7186	Brachypodium distachyon (Stiff brome) 1.0	1:29111260-29111277	-	110	0.31	GAUUUGUUGUGGAUGAUG		OtherRNA	ShortStack
bdi-b1.0r1-7187	Brachypodium distachyon (Stiff brome) 1.0	1:29111494-29111709	-	882	2.52	CAACUCUUAGCAACG		OtherRNA	ShortStack
bdi-b1.0r1-7214	Brachypodium distachyon (Stiff brome) 1.0	1:29262695-29262901	+	397	1.13	UUGCAGUAGGCUUGGAACACGGC		OtherRNA	ShortStack
bdi-b1.0r1-7223	Brachypodium distachyon (Stiff brome) 1.0	1:29296324-29296343	-	206	0.59	AGAGGUAUGUGGAACUCC		OtherRNA	ShortStack
bdi-b1.0r1-7241	Brachypodium distachyon (Stiff brome) 1.0	1:29368989-29369129	+	2,177	6.22	CCGGUUGGUUGUGGUGGUGGCAGGUGGUGGGU		OtherRNA	ShortStack
bdi-b1.0r1-7246	Brachypodium distachyon (Stiff brome) 1.0	1:29387783-29388753	+	1,487	4.25	ACUAUUUCGAGACAGAGCAUGAACACG		OtherRNA	ShortStack
bdi-b1.0r1-7256	Brachypodium distachyon (Stiff brome) 1.0	1:29408480-29408530	-	212	0.61	UUGAGUAGGGAAGAACUUUUGGGUUG		OtherRNA	ShortStack
bdi-b1.0r1-7273	Brachypodium distachyon (Stiff brome) 1.0	1:29523075-29523244	+	21,557	61.58	AAGUAGUCUGAGCCGA		OtherRNA	ShortStack
bdi-b1.0r1-7274	Brachypodium distachyon (Stiff brome) 1.0	1:29523309-29523506	+	5,036	14.39	CUGAGCGGUUACCUGAGCAA		OtherRNA	ShortStack
bdi-b1.0r1-7275	Brachypodium distachyon (Stiff brome) 1.0	1:29525150-29525165	+	580	1.66	GGGGACGUAGAUCAUA		OtherRNA	ShortStack
bdi-b1.0r1-7288	Brachypodium distachyon (Stiff brome) 1.0	1:29582336-29582449	-	8,869	25.33	UCCGUCGUAGUCUAGG		OtherRNA	ShortStack
bdi-b1.0r1-7308	Brachypodium distachyon (Stiff brome) 1.0	1:29675922-29675947	+	723	2.07	AUAGGAUUGAAGAUACUAAAUU		OtherRNA	ShortStack
bdi-b1.0r1-7314	Brachypodium distachyon (Stiff brome) 1.0	1:29710118-29710516	+	14,868	42.47	CAGGACAUCUCUCUUUCAAGGAGGCAGC		OtherRNA	ShortStack
bdi-b1.0r1-7335	Brachypodium distachyon (Stiff brome) 1.0	1:29785352-29786295	-	1,200	3.43	CUUCCGUCCCAGCCA	miR319	OtherRNA	ShortStack
bdi-b1.0r1-7336	Brachypodium distachyon (Stiff brome) 1.0	1:29786678-29787032	-	641	1.83	UCUGGAACAGGAAAGACUGCUAC		OtherRNA	ShortStack
bdi-b1.0r1-7396	Brachypodium distachyon (Stiff brome) 1.0	1:30017685-30017791	-	34,845	99.53	GGUGGCUGUAGUUUAGUGGUGAGAAUUCCACGUUG		OtherRNA	ShortStack
bdi-b1.0r1-7421	Brachypodium distachyon (Stiff brome) 1.0	1:30138295-30139741	+	3,144	8.98	AUAUUCUCUGAUGAUCGGACAGGA		OtherRNA	ShortStack
bdi-b1.0r1-7471	Brachypodium distachyon (Stiff brome) 1.0	1:30342932-30343036	+	277	0.79	CUGCCUUGCCUGGCUGUAGAACGG		OtherRNA	ShortStack
bdi-b1.0r1-7511	Brachypodium distachyon (Stiff brome) 1.0	1:30495238-30495256	+	535	1.53	UGGAGGGACGGAGAAGGC		OtherRNA	ShortStack
bdi-b1.0r1-7563	Brachypodium distachyon (Stiff brome) 1.0	1:30719971-30720065	+	580	1.66	UGGUUAGGACAUUGGACUCUGAAUCCAGU		OtherRNA	ShortStack
bdi-b1.0r1-7565	Brachypodium distachyon (Stiff brome) 1.0	1:30730634-30730788	+	1,529	4.37	AUUCAACUCUGCAUCUUCCUUAUG		OtherRNA	ShortStack
bdi-b1.0r1-7570	Brachypodium distachyon (Stiff brome) 1.0	1:30738881-30739047	-	4,818	13.76	CUUCCAUGACUCUGAUGCAU		OtherRNA	ShortStack
bdi-b1.0r1-7609	Brachypodium distachyon (Stiff brome) 1.0	1:30908020-30908717	+	3,153	9.01	UCCGGUUGGGCAGUAAGG		OtherRNA	ShortStack
bdi-b1.0r1-7659	Brachypodium distachyon (Stiff brome) 1.0	1:31177936-31178597	.	2,140	6.11	ACAUGGAGACCUAGGAUGUAGAAG		OtherRNA	ShortStack
bdi-b1.0r1-7673	Brachypodium distachyon (Stiff brome) 1.0	1:31213916-31213931	+	263	0.75	CGGAUGGGCCCUCCA	miR35	OtherRNA	ShortStack
bdi-b1.0r1-7680	Brachypodium distachyon (Stiff brome) 1.0	1:31244531-31244556	+	176	0.50	GGGGCUGUAGCUCAAA		OtherRNA	ShortStack
bdi-b1.0r1-7690	Brachypodium distachyon (Stiff brome) 1.0	1:31278040-31278099	.	325	0.93	UAGGACGUUGCCAAGC		OtherRNA	ShortStack
bdi-b1.0r1-7694	Brachypodium distachyon (Stiff brome) 1.0	1:31284190-31284363	-	951	2.72	UUGGAUUGGUGGUUUAAC		OtherRNA	ShortStack
bdi-b1.0r1-7695	Brachypodium distachyon (Stiff brome) 1.0	1:31289521-31289540	+	325	0.93	GUACGCGAGCUGGGUUU		OtherRNA	ShortStack
bdi-b1.0r1-7721	Brachypodium distachyon (Stiff brome) 1.0	1:31386396-31387248	.	2,850	8.14	AGAUAAAUGAGUUUCGGACAAAGA		OtherRNA	ShortStack
bdi-b1.0r1-7836	Brachypodium distachyon (Stiff brome) 1.0	1:31915481-31915511	-	49	0.14	UUGCGUCGAGAUUCGUGC		OtherRNA	ShortStack
bdi-b1.0r1-7837	Brachypodium distachyon (Stiff brome) 1.0	1:31915649-31915946	-	224	0.64	AGGCGACCAAAAACCUGGA		OtherRNA	ShortStack
bdi-b1.0r1-7838	Brachypodium distachyon (Stiff brome) 1.0	1:31916116-31916662	-	440	1.26	GUGGAGCCGGAGAUUCUGACGGA		OtherRNA	ShortStack
bdi-b1.0r1-7855	Brachypodium distachyon (Stiff brome) 1.0	1:32016414-32016501	+	297	0.85	AAAACAGUUGAUAUGGCCGAGUUGGU		OtherRNA	ShortStack
bdi-b1.0r1-7867	Brachypodium distachyon (Stiff brome) 1.0	1:32070846-32070927	-	181	0.52	UCCGUCGUAGUUAGG		OtherRNA	ShortStack
bdi-b1.0r1-7895	Brachypodium distachyon (Stiff brome) 1.0	1:32193210-32193460	+	799	2.28	AGGAUGAAGUGAGCGG		OtherRNA	ShortStack
bdi-b1.0r1-7909	Brachypodium distachyon (Stiff brome) 1.0	1:32226893-32226991	+	2,857	8.16	GUCAGGAUGGCCGAG	miR10240	OtherRNA	ShortStack
bdi-b1.0r1-7928	Brachypodium distachyon (Stiff brome) 1.0	1:32296986-32297345	+	5,252	15.00	GGGCAUUUGGUCUAGUGGUAUGAUUCUCGCUUG		OtherRNA	ShortStack
bdi-b1.0r1-8058	Brachypodium distachyon (Stiff brome) 1.0	1:32781752-32782160	.	901	2.57	CCACGUCGAUAAGGAGCUAAAAGAUC		OtherRNA	ShortStack
bdi-b1.0r1-8059	Brachypodium distachyon (Stiff brome) 1.0	1:32782221-32782751	+	11,868	33.90	CCAAGAGCUCUUAUCGACGG		OtherRNA	ShortStack
bdi-b1.0r1-8071	Brachypodium distachyon (Stiff brome) 1.0	1:32849556-32849595	-	309	0.88	AAAAGAAAGAAGGAUCUGGCUGUUGA		OtherRNA	ShortStack
bdi-b1.0r1-8086	Brachypodium distachyon (Stiff brome) 1.0	1:32887185-32887614	+	315	0.90	CGAGGUGCGGGCCGCGAUCUAGAAGGC		OtherRNA	ShortStack
bdi-b1.0r1-8110	Brachypodium distachyon (Stiff brome) 1.0	1:32957772-32957879	+	2,740	7.83	GCACCAGUGGUCUAGUGGUAGA		OtherRNA	ShortStack
bdi-b1.0r1-8195	Brachypodium distachyon (Stiff brome) 1.0	1:33204244-33204277	-	547	1.56	UAAUAUGUCUAUGUAUGCUU		OtherRNA	ShortStack
bdi-b1.0r1-8224	Brachypodium distachyon (Stiff brome) 1.0	1:33315352-33315482	+	1,109	3.17	CAUCCAUCGUAAUAGGAAAUC		OtherRNA	ShortStack
bdi-b1.0r1-8229	Brachypodium distachyon (Stiff brome) 1.0	1:33334977-33335419	+	761	2.17	GAUGACUGGAAGAGGUUA		OtherRNA	ShortStack
bdi-b1.0r1-8230	Brachypodium distachyon (Stiff brome) 1.0	1:33336039-33336644	+	1,349	3.85	CAGGACGAGAACACUGUAUCAUACGU		OtherRNA	ShortStack
bdi-b1.0r1-8267	Brachypodium distachyon (Stiff brome) 1.0	1:33449703-33449723	+	2,000	5.71	AUCCCACUCUGGUCACCA		OtherRNA	ShortStack
bdi-b1.0r1-8312	Brachypodium distachyon (Stiff brome) 1.0	1:33591697-33591713	+	626	1.79	CGAUAGUCGGCUCCA		OtherRNA	ShortStack
bdi-b1.0r1-8319	Brachypodium distachyon (Stiff brome) 1.0	1:33623150-33623515	-	234	0.67	AUUACUUACUGUAGUA		OtherRNA	ShortStack
bdi-b1.0r1-8376	Brachypodium distachyon (Stiff brome) 1.0	1:33843603-33844063	-	14,163	40.46	AGGUGCGGCUGGAUCACCUCCU		OtherRNA	ShortStack
bdi-b1.0r1-8413	Brachypodium distachyon (Stiff brome) 1.0	1:33974672-33974698	-	85	0.24	AGGGCUGUAGCGCAG		OtherRNA	ShortStack
bdi-b1.0r1-8442	Brachypodium distachyon (Stiff brome) 1.0	1:34077927-34078011	-	890	2.54	GUAGAAAAGUCACGCAAGCAG		OtherRNA	ShortStack
bdi-b1.0r1-8487	Brachypodium distachyon (Stiff brome) 1.0	1:34229963-34230314	+	325	0.93	AAAAGACUGUAGAGGAUACUGAUGUAA		OtherRNA	ShortStack
bdi-b1.0r1-8488	Brachypodium distachyon (Stiff brome) 1.0	1:34230680-34231004	+	344	0.98	UAUGCAGACAGAGAACUCUCAG		OtherRNA	ShortStack
bdi-b1.0r1-8541	Brachypodium distachyon (Stiff brome) 1.0	1:34356630-34356759	+	4,241	12.11	UGGUUAGGACAUUGGACUCUGAAUCCA		OtherRNA	ShortStack
bdi-b1.0r1-8556	Brachypodium distachyon (Stiff brome) 1.0	1:34413757-34413791	+	831	2.37	GUAGAAUACUCGUAAACUUU		OtherRNA	ShortStack
bdi-b1.0r1-8557	Brachypodium distachyon (Stiff brome) 1.0	1:34414787-34415218	+	3,493	9.98	UGUGGUAGAAAGAACUACA		OtherRNA	ShortStack
bdi-b1.0r1-8558	Brachypodium distachyon (Stiff brome) 1.0	1:34415357-34415409	-	163	0.47	AAGAGUGAAGACUAGUAGA		OtherRNA	ShortStack
bdi-b1.0r1-8559	Brachypodium distachyon (Stiff brome) 1.0	1:34415457-34415827	.	399	1.14	AUAGAUUGUCGAAGAUAGAAGAGC		OtherRNA	ShortStack
bdi-b1.0r1-8672	Brachypodium distachyon (Stiff brome) 1.0	1:34967662-34968387	+	100,990	288.48	UGAAGCGAUCUCGUACUAAACGA		OtherRNA	ShortStack
bdi-b1.0r1-8700	Brachypodium distachyon (Stiff brome) 1.0	1:35135456-35135655	.	346	0.99	ACCAGAUCAGUAUGAGUAGGACUC		OtherRNA	ShortStack
bdi-b1.0r1-8715	Brachypodium distachyon (Stiff brome) 1.0	1:35187166-35187187	+	633	1.81	UUUGGAUUGAAGGGAUUUUCU		OtherRNA	ShortStack
bdi-b1.0r1-8756	Brachypodium distachyon (Stiff brome) 1.0	1:35335596-35335618	+	202	0.58	AACCUGGCUCUGAUACCA	miR5139	OtherRNA	ShortStack
bdi-b1.0r1-8827	Brachypodium distachyon (Stiff brome) 1.0	1:35684495-35684528	-	53	0.15	CUGCUUCAGGACUCUGCAGCGGUU		OtherRNA	ShortStack
bdi-b1.0r1-8828	Brachypodium distachyon (Stiff brome) 1.0	1:35685225-35685249	-	49	0.14	UCCCUGGUGAAGCUGGACAUUCGGC		OtherRNA	ShortStack
bdi-b1.0r1-8842	Brachypodium distachyon (Stiff brome) 1.0	1:35727387-35727405	-	575	1.64	UUUACAGUCCGACGA		OtherRNA	ShortStack
bdi-b1.0r1-8849	Brachypodium distachyon (Stiff brome) 1.0	1:35758001-35758436	+	564,581	1,612.71	AAGCGGUGGAGCAUGUGGUUUAAUUCGA		OtherRNA	ShortStack
bdi-b1.0r1-8850	Brachypodium distachyon (Stiff brome) 1.0	1:35758569-35758872	+	8,015	22.90	CGCGAUCUCGCGAGGGUGAGCUA		OtherRNA	ShortStack
bdi-b1.0r1-8851	Brachypodium distachyon (Stiff brome) 1.0	1:35760952-35761274	+	88,703	253.38	UUCAUGGACGUUGAUAAGAUCCUUC		OtherRNA	ShortStack
bdi-b1.0r1-8852	Brachypodium distachyon (Stiff brome) 1.0	1:35761400-35761826	+	6,506	18.58	CGUGAGGGAAAGGCGAAAAG		OtherRNA	ShortStack
bdi-b1.0r1-8853	Brachypodium distachyon (Stiff brome) 1.0	1:35761856-35762076	-	7,464	21.32	GCGGGUAUAGUUUAGUGGUA		OtherRNA	ShortStack
bdi-b1.0r1-8854	Brachypodium distachyon (Stiff brome) 1.0	1:35762360-35763674	+	141,765	404.95	GCCCCUAUCGUCUAGUGG		OtherRNA	ShortStack
bdi-b1.0r1-8855	Brachypodium distachyon (Stiff brome) 1.0	1:35763808-35763870	.	1,014	2.90	AUAUGAUUCGUCUAUUUCUUAGAGU		OtherRNA	ShortStack
bdi-b1.0r1-8856	Brachypodium distachyon (Stiff brome) 1.0	1:35764019-35765030	+	66,859	190.98	UGAUAUGCAGAUUAGUAGA		OtherRNA	ShortStack
bdi-b1.0r1-8857	Brachypodium distachyon (Stiff brome) 1.0	1:35765170-35767224	-	33,216	94.88	GGCGGCAUGGCCAAGUGGUAAGGCAGGGGACU		OtherRNA	ShortStack
bdi-b1.0r1-8858	Brachypodium distachyon (Stiff brome) 1.0	1:35767347-35768687	+	10,937	31.24	UAGAAUUUCAUGUGAUUCAGUAAACAGA		OtherRNA	ShortStack
bdi-b1.0r1-8859	Brachypodium distachyon (Stiff brome) 1.0	1:35769557-35770627	.	2,154	6.15	AUUGUUGGAACUGGAUUGGAACGC		OtherRNA	ShortStack
bdi-b1.0r1-8860	Brachypodium distachyon (Stiff brome) 1.0	1:35770723-35771185	.	753	2.15	CUAAAGCCCAAACUUCCAUUUCUCCU		OtherRNA	ShortStack
bdi-b1.0r1-8861	Brachypodium distachyon (Stiff brome) 1.0	1:35773413-35774218	.	1,296	3.70	UUGAGGACUCACAGAAAU		OtherRNA	ShortStack
bdi-b1.0r1-8862	Brachypodium distachyon (Stiff brome) 1.0	1:35775267-35776066	-	7,799	22.28	UAUUUGUCCUCUGAGCUUUCACCCAGG		OtherRNA	ShortStack
bdi-b1.0r1-8863	Brachypodium distachyon (Stiff brome) 1.0	1:35777606-35777677	-	574	1.64	CCUUUCAACCAAUCAAUACG		OtherRNA	ShortStack
bdi-b1.0r1-8864	Brachypodium distachyon (Stiff brome) 1.0	1:35778105-35778239	+	47,933	136.92	AUAUAUUUCAAGUUAUUUCGGAUCU		OtherRNA	ShortStack
bdi-b1.0r1-8865	Brachypodium distachyon (Stiff brome) 1.0	1:35830097-35830886	.	2,017	5.76	UGGACAAUUUUGAAAUCAGGC		OtherRNA	ShortStack
bdi-b1.0r1-8881	Brachypodium distachyon (Stiff brome) 1.0	1:35901325-35901591	+	293	0.84	AAGAGUGAUCGUGGGAAAUACGA		OtherRNA	ShortStack
bdi-b1.0r1-8897	Brachypodium distachyon (Stiff brome) 1.0	1:35957581-35957808	-	27,035	77.23	AAGCGAUCUGCCGAAGCU		OtherRNA	ShortStack
bdi-b1.0r1-8921	Brachypodium distachyon (Stiff brome) 1.0	1:36250598-36251708	+	12,834	36.66	AACCUGGCUCUGAUACCA	miR5139	OtherRNA	ShortStack
bdi-b1.0r1-8932	Brachypodium distachyon (Stiff brome) 1.0	1:36580625-36580705	+	1,679	4.80	AGAUUUGAAAUCUGUUG		OtherRNA	ShortStack
bdi-b1.0r1-8933	Brachypodium distachyon (Stiff brome) 1.0	1:36631250-36631356	-	3,152	9.00	AUAGGACGAACGAACUGGC		OtherRNA	ShortStack
bdi-b1.0r1-8939	Brachypodium distachyon (Stiff brome) 1.0	1:36705560-36705616	-	1,007	2.88	CAAAGCAGAGCUCUGUG		OtherRNA	ShortStack
bdi-b1.0r1-8942	Brachypodium distachyon (Stiff brome) 1.0	1:36712620-36712818	+	512	1.46	CUGGGAAAAAGGAGCA		OtherRNA	ShortStack
bdi-b1.0r1-8943	Brachypodium distachyon (Stiff brome) 1.0	1:36750854-36750922	+	1,014	2.90	CUCCCACUGUGGUCGCCA		OtherRNA	ShortStack
bdi-b1.0r1-8967	Brachypodium distachyon (Stiff brome) 1.0	1:37120440-37120496	+	247	0.71	GGGUAGAAGCGAGCUGUU		OtherRNA	ShortStack
bdi-b1.0r1-9031	Brachypodium distachyon (Stiff brome) 1.0	1:37878003-37878062	+	624	1.78	UUUGGACAUCUUGUUUGGGCUACUGG		OtherRNA	ShortStack
bdi-b1.0r1-9038	Brachypodium distachyon (Stiff brome) 1.0	1:37908347-37908413	-	265	0.76	GUAGAGCCUCGCUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-9140	Brachypodium distachyon (Stiff brome) 1.0	1:38437569-38437767	+	342	0.98	AAAAAGUCAUUGACCUCUGUUAUAUGGA		OtherRNA	ShortStack
bdi-b1.0r1-9141	Brachypodium distachyon (Stiff brome) 1.0	1:38456929-38457415	+	1,319	3.77	UUUGUUUUUAUGUUAUUUUGUGAAGG	miR9773	OtherRNA	ShortStack
bdi-b1.0r1-9142	Brachypodium distachyon (Stiff brome) 1.0	1:38457568-38457920	.	1,475	4.21	ACCGCGAAAGCGGGGGUCGACGA		OtherRNA	ShortStack
bdi-b1.0r1-9143	Brachypodium distachyon (Stiff brome) 1.0	1:38458259-38459080	.	89,599	255.94	CCUGAACAGACCGCCGGUGUUAAGCC		OtherRNA	ShortStack
bdi-b1.0r1-9147	Brachypodium distachyon (Stiff brome) 1.0	1:38478622-38479214	-	970	2.77	UACAGUCAACGGUAGACAGACAGC		OtherRNA	ShortStack
bdi-b1.0r1-9173	Brachypodium distachyon (Stiff brome) 1.0	1:38587104-38587120	+	818	2.34	UUUGGAUUGAAGGGGG	miR159	OtherRNA	ShortStack
bdi-b1.0r1-9181	Brachypodium distachyon (Stiff brome) 1.0	1:38629386-38629411	+	193	0.55	CUUCCUAACAUUUAUUGUUUGAGUAG		OtherRNA	ShortStack
bdi-b1.0r1-9245	Brachypodium distachyon (Stiff brome) 1.0	1:39230747-39230767	+	1,332	3.81	UUUGGAUUGAAGGGAGU	miR159	OtherRNA	ShortStack
bdi-b1.0r1-9246	Brachypodium distachyon (Stiff brome) 1.0	1:39231627-39231830	+	2,775	7.93	UUUGGAUUGAAGGGAGCAA		OtherRNA	ShortStack
bdi-b1.0r1-9264	Brachypodium distachyon (Stiff brome) 1.0	1:39318447-39318762	+	953	2.72	GGAUGCGAUCAUAUCAGC		OtherRNA	ShortStack
bdi-b1.0r1-9265	Brachypodium distachyon (Stiff brome) 1.0	1:39323991-39324342	+	520	1.49	AACCUGGCUCUGAUACCA	miR5139	OtherRNA	ShortStack
bdi-b1.0r1-9287	Brachypodium distachyon (Stiff brome) 1.0	1:39426980-39426998	-	399	1.14	UUCAUGGACGUAGAG		OtherRNA	ShortStack
bdi-b1.0r1-9327	Brachypodium distachyon (Stiff brome) 1.0	1:39541220-39541874	-	1,096	3.13	CGUCCCACAGACGGCGCCA		OtherRNA	ShortStack
bdi-b1.0r1-9431	Brachypodium distachyon (Stiff brome) 1.0	1:39988691-39990199	-	4,118	11.76	UGUGUAGAUACAUUUGGACAAAUU		OtherRNA	ShortStack
bdi-b1.0r1-9513	Brachypodium distachyon (Stiff brome) 1.0	1:40297354-40297840	+	2,013	5.75	AGGUGGUUAGCAAGCAAGAGCGCA		OtherRNA	ShortStack
bdi-b1.0r1-9571	Brachypodium distachyon (Stiff brome) 1.0	1:40612734-40612762	+	111	0.32	AGCGUAGUAGAGCAG		OtherRNA	ShortStack
bdi-b1.0r1-9586	Brachypodium distachyon (Stiff brome) 1.0	1:40656353-40657119	-	1,416	4.05	AAUGCGAUAAGGAUCUUUGUUAGG		OtherRNA	ShortStack
bdi-b1.0r1-9595	Brachypodium distachyon (Stiff brome) 1.0	1:40694698-40694868	.	363	1.04	CAGAUCAGUAUGAGUAGGACUCCG		OtherRNA	ShortStack
bdi-b1.0r1-9635	Brachypodium distachyon (Stiff brome) 1.0	1:40875351-40875544	+	520	1.49	AGGGAAACUGACAUCGGGGCC		OtherRNA	ShortStack
bdi-b1.0r1-9677	Brachypodium distachyon (Stiff brome) 1.0	1:41100733-41100858	-	243	0.69	GAUGCCAGAAUGAUA		OtherRNA	ShortStack
bdi-b1.0r1-9684	Brachypodium distachyon (Stiff brome) 1.0	1:41148946-41149312	.	479	1.37	CUCGCAACACCCCCCA		OtherRNA	ShortStack
bdi-b1.0r1-9695	Brachypodium distachyon (Stiff brome) 1.0	1:41172833-41172937	-	195	0.56	ACACAAGGACUGAGAGGGUGG		OtherRNA	ShortStack
bdi-b1.0r1-9703	Brachypodium distachyon (Stiff brome) 1.0	1:41203551-41203568	-	356	1.02	CCAAGAUCGGAUAUAGC		OtherRNA	ShortStack
bdi-b1.0r1-9706	Brachypodium distachyon (Stiff brome) 1.0	1:41219912-41219944	+	223	0.64	UGACCUGCAUGGGCCACCA		OtherRNA	ShortStack
bdi-b1.0r1-9729	Brachypodium distachyon (Stiff brome) 1.0	1:41324821-41324860	-	319	0.91	AAUGGUAAAACAUCUCCUUG		OtherRNA	ShortStack
bdi-b1.0r1-9755	Brachypodium distachyon (Stiff brome) 1.0	1:41470143-41470227	-	1,101	3.15	AUCAGAGUGGCGCAGCGGAAGCGUGGUGGGCCCA		OtherRNA	ShortStack
bdi-b1.0r1-9840	Brachypodium distachyon (Stiff brome) 1.0	1:41775658-41775998	+	722	2.06	UUGACAAGGUUCAAAGAAAGGGUGGG		OtherRNA	ShortStack
bdi-b1.0r1-9854	Brachypodium distachyon (Stiff brome) 1.0	1:41847200-41848258	+	228,415	652.46	UUCAUGGACGUUGAUAAGAUCCUUC		OtherRNA	ShortStack
bdi-b1.0r1-9861	Brachypodium distachyon (Stiff brome) 1.0	1:41875184-41875288	+	333	0.95	UUUGGCUUGUAGAUAGCAUAGC		OtherRNA	ShortStack
bdi-b1.0r1-9862	Brachypodium distachyon (Stiff brome) 1.0	1:41875469-41875578	+	336	0.96	AGGACGUCUCUGCUCCGUGU		OtherRNA	ShortStack
bdi-b1.0r1-9863	Brachypodium distachyon (Stiff brome) 1.0	1:41876125-41876331	+	635	1.81	AAAAGAUCGCUGGAACAG		OtherRNA	ShortStack
bdi-b1.0r1-9936	Brachypodium distachyon (Stiff brome) 1.0	1:42204402-42204422	-	2,428	6.94	UGGACGUUGAUAAGA		OtherRNA	ShortStack
bdi-b1.0r1-9974	Brachypodium distachyon (Stiff brome) 1.0	1:42337497-42338080	+	242	0.69	ACUACUGUAAAUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-10015	Brachypodium distachyon (Stiff brome) 1.0	1:42545377-42545863	.	835	2.39	UCUGAAUGCCCCCCA		OtherRNA	ShortStack
bdi-b1.0r1-10066	Brachypodium distachyon (Stiff brome) 1.0	1:42725117-42725132	+	120	0.34	GGUGAUGUAGCUCAG	miR9042	OtherRNA	ShortStack
bdi-b1.0r1-10120	Brachypodium distachyon (Stiff brome) 1.0	1:42995883-42995962	+	256,172	731.75	GCACCAGUGGUCUAGUGGUAGAAUAGUACC		OtherRNA	ShortStack
bdi-b1.0r1-10140	Brachypodium distachyon (Stiff brome) 1.0	1:43048613-43048812	+	1,671	4.77	GUGCACGCGUCGCCGUCAAGAGG		OtherRNA	ShortStack
bdi-b1.0r1-10166	Brachypodium distachyon (Stiff brome) 1.0	1:43170170-43170363	-	107,299	306.50	UAAAGCGUCUGUAGGUGGCUUU		OtherRNA	ShortStack
bdi-b1.0r1-10187	Brachypodium distachyon (Stiff brome) 1.0	1:43257719-43257865	-	265	0.76	AACUGUGGAGAAGAUG		OtherRNA	ShortStack
bdi-b1.0r1-10190	Brachypodium distachyon (Stiff brome) 1.0	1:43264790-43265307	.	804	2.30	GUUGAAUAGUGAAACAGCGGAUGC		OtherRNA	ShortStack
bdi-b1.0r1-10199	Brachypodium distachyon (Stiff brome) 1.0	1:43294439-43294790	-	3,265	9.33	UGCAUAUGUUGAUGCAAGAAUGAUGAAGGCU		OtherRNA	ShortStack
bdi-b1.0r1-10200	Brachypodium distachyon (Stiff brome) 1.0	1:43295263-43295555	-	8,920	25.48	UGGAUGUGUAGACUCAAAAGUUAUGAAGGCU		OtherRNA	ShortStack
bdi-b1.0r1-10201	Brachypodium distachyon (Stiff brome) 1.0	1:43295711-43296088	-	2,486	7.10	CAUUCGUCUAGGGGAAUCUCUGAUGCUA		OtherRNA	ShortStack
bdi-b1.0r1-10215	Brachypodium distachyon (Stiff brome) 1.0	1:43353360-43353845	+	296	0.85	AGUAGAAUUAUGUAGUGUAGAACGAC		OtherRNA	ShortStack
bdi-b1.0r1-10264	Brachypodium distachyon (Stiff brome) 1.0	1:43480057-43480073	+	271	0.77	CUAGUACGAGAGGACCG		OtherRNA	ShortStack
bdi-b1.0r1-10289	Brachypodium distachyon (Stiff brome) 1.0	1:43595558-43595667	-	4,754	13.58	AAACCCCGAACUAAAUCCGAUUCUUUU		OtherRNA	ShortStack
bdi-b1.0r1-10292	Brachypodium distachyon (Stiff brome) 1.0	1:43603490-43603636	+	145	0.41	AAGGAUUGUGAUCUAUGGC		OtherRNA	ShortStack
bdi-b1.0r1-10293	Brachypodium distachyon (Stiff brome) 1.0	1:43603738-43604162	+	205	0.59	CUAUUAGUCAGUUGUCUGCUCUGUUGACA		OtherRNA	ShortStack
bdi-b1.0r1-10294	Brachypodium distachyon (Stiff brome) 1.0	1:43604437-43604476	+	207	0.59	AUGGAAGAACUCAUGGAGCAGCA		OtherRNA	ShortStack
bdi-b1.0r1-10328	Brachypodium distachyon (Stiff brome) 1.0	1:43671329-43671662	.	1,517	4.33	UCUUAUCUUAUGGAAUAGA		OtherRNA	ShortStack
bdi-b1.0r1-10448	Brachypodium distachyon (Stiff brome) 1.0	1:44052657-44053684	.	2,795	7.98	CAAGAAUUAUGGAACUGAGGAGUC		OtherRNA	ShortStack
bdi-b1.0r1-10477	Brachypodium distachyon (Stiff brome) 1.0	1:44167573-44167810	-	676	1.93	CAGGAGAUUGUCGGGCGUGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-10555	Brachypodium distachyon (Stiff brome) 1.0	1:44500754-44500777	-	356	1.02	AUGUCCCGGCGCCGGAACCA		OtherRNA	ShortStack
bdi-b1.0r1-10560	Brachypodium distachyon (Stiff brome) 1.0	1:44512528-44512586	.	43	0.12	AUUCAUCGAGGACGGGGUCAGAAG		OtherRNA	ShortStack
bdi-b1.0r1-10600	Brachypodium distachyon (Stiff brome) 1.0	1:44800065-44800462	+	16,659	47.59	AUUAAUCGGACGAGGACA		OtherRNA	ShortStack
bdi-b1.0r1-10601	Brachypodium distachyon (Stiff brome) 1.0	1:44800846-44801223	.	760	2.17	AUUGUAGAGCUUGUCUAUCUCGGC		OtherRNA	ShortStack
bdi-b1.0r1-10615	Brachypodium distachyon (Stiff brome) 1.0	1:44829800-44829855	+	55	0.16	CUAAGUACAUGGGGUUU		OtherRNA	ShortStack
bdi-b1.0r1-10686	Brachypodium distachyon (Stiff brome) 1.0	1:45111450-45111798	-	521	1.49	UUGAAAGCAUCGGAUGUGAUGGCU		OtherRNA	ShortStack
bdi-b1.0r1-10687	Brachypodium distachyon (Stiff brome) 1.0	1:45111936-45111995	-	293	0.84	CUUCUGAUAAGACUGCUGGU		OtherRNA	ShortStack
bdi-b1.0r1-10688	Brachypodium distachyon (Stiff brome) 1.0	1:45112102-45112243	-	463	1.32	UUGAGACUGAUGACGUCAAAGACAUGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-10689	Brachypodium distachyon (Stiff brome) 1.0	1:45113286-45113397	-	286	0.82	AACGAACAUUUGAAC	miR6254	OtherRNA	ShortStack
bdi-b1.0r1-10698	Brachypodium distachyon (Stiff brome) 1.0	1:45154020-45154140	+	127	0.36	AGACCUACGUGCUGGACAAGAAGGG		OtherRNA	ShortStack
bdi-b1.0r1-10701	Brachypodium distachyon (Stiff brome) 1.0	1:45162961-45163252	+	1,352	3.86	CCAGAUCAAUACUGCUAGAA		OtherRNA	ShortStack
bdi-b1.0r1-10702	Brachypodium distachyon (Stiff brome) 1.0	1:45163743-45164452	+	407	1.16	UGAUGAAUGGAAGGAAGACAUUCUG		OtherRNA	ShortStack
bdi-b1.0r1-10703	Brachypodium distachyon (Stiff brome) 1.0	1:45165804-45166699	-	4,582	13.09	AUGAACUGUCUACUUAUGAUCGGC		OtherRNA	ShortStack
bdi-b1.0r1-10704	Brachypodium distachyon (Stiff brome) 1.0	1:45166776-45167198	.	740	2.11	UGAGAUCAAUUCGGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-10705	Brachypodium distachyon (Stiff brome) 1.0	1:45167810-45168598	.	3,617	10.33	AAAUUGGCUGAUAUCAUGACGAUAUUAGGU		OtherRNA	ShortStack
bdi-b1.0r1-10717	Brachypodium distachyon (Stiff brome) 1.0	1:45221342-45221496	+	206	0.59	UAUGGAUUCUGGAAGUACGUGAG		OtherRNA	ShortStack
bdi-b1.0r1-10727	Brachypodium distachyon (Stiff brome) 1.0	1:45250656-45251059	-	382	1.09	CAAUGGUCGGUACAAAG		OtherRNA	ShortStack
bdi-b1.0r1-10759	Brachypodium distachyon (Stiff brome) 1.0	1:45364389-45365563	+	22,460	64.16	UAUGGAUCGUACAUGGACGA		OtherRNA	ShortStack
bdi-b1.0r1-10789	Brachypodium distachyon (Stiff brome) 1.0	1:45436385-45436408	-	289	0.83	UUUGGAUUGAAGGAAG	miR159	OtherRNA	ShortStack
bdi-b1.0r1-10792	Brachypodium distachyon (Stiff brome) 1.0	1:45444960-45445067	+	11,759	33.59	AUCCCACGGACGGCGCCA		OtherRNA	ShortStack
bdi-b1.0r1-10854	Brachypodium distachyon (Stiff brome) 1.0	1:45705833-45705849	-	290	0.83	GGGGAUGUCGCUCAG		OtherRNA	ShortStack
bdi-b1.0r1-10861	Brachypodium distachyon (Stiff brome) 1.0	1:45732922-45733209	+	3,831	10.94	GCUCGAUGCCAGAAU		OtherRNA	ShortStack
bdi-b1.0r1-10890	Brachypodium distachyon (Stiff brome) 1.0	1:45829208-45829226	+	450	1.29	AGAAUUGAUGAUGCUGCAU		OtherRNA	ShortStack
bdi-b1.0r1-10891	Brachypodium distachyon (Stiff brome) 1.0	1:45835747-45836156	.	3,140	8.97	AUAGACGAAGAACAAAGAAGAUA		OtherRNA	ShortStack
bdi-b1.0r1-10925	Brachypodium distachyon (Stiff brome) 1.0	1:46006576-46006628	+	431	1.23	AAGGAAGCUAUAAGA		OtherRNA	ShortStack
bdi-b1.0r1-10943	Brachypodium distachyon (Stiff brome) 1.0	1:46072438-46073507	+	299,887	856.62	ACACUGGGACUGAGACACGGC		OtherRNA	ShortStack
bdi-b1.0r1-10944	Brachypodium distachyon (Stiff brome) 1.0	1:46073779-46078388	+	27,972	79.90	CGAGGAGCCGAGUGACG		OtherRNA	ShortStack
bdi-b1.0r1-10947	Brachypodium distachyon (Stiff brome) 1.0	1:46084338-46086528	.	6,769	19.34	AGCAGGACUGGGUACGACGAUGGC		OtherRNA	ShortStack
bdi-b1.0r1-10948	Brachypodium distachyon (Stiff brome) 1.0	1:46090493-46091596	-	2,170	6.20	GUUAUCGGACGGCAAAGCGGAGAC		OtherRNA	ShortStack
bdi-b1.0r1-10953	Brachypodium distachyon (Stiff brome) 1.0	1:46098509-46098912	-	9,246	26.41	GUGAACCGGGUUACCAAAA		OtherRNA	ShortStack
bdi-b1.0r1-10979	Brachypodium distachyon (Stiff brome) 1.0	1:46207087-46207195	-	1,220	3.49	UGUAGUAACCGGCUGUAUCUUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-11014	Brachypodium distachyon (Stiff brome) 1.0	1:46328630-46329407	.	3,155	9.01	AAGGACAUGGCUAGCGAGAGAACA		OtherRNA	ShortStack
bdi-b1.0r1-11025	Brachypodium distachyon (Stiff brome) 1.0	1:46368950-46368965	+	672	1.92	CCCACAGCUGUCACCA	miR8629	OtherRNA	ShortStack
bdi-b1.0r1-11042	Brachypodium distachyon (Stiff brome) 1.0	1:46452809-46454073	.	388,856	1,110.76	GCGUGCCUGUUGAAGAAUGAGCCGG		OtherRNA	ShortStack
bdi-b1.0r1-11047	Brachypodium distachyon (Stiff brome) 1.0	1:46476595-46477149	-	3,779	10.80	UAUGUUGCGCUGUUGCUUUUGGUU		OtherRNA	ShortStack
bdi-b1.0r1-11048	Brachypodium distachyon (Stiff brome) 1.0	1:46477401-46477811	-	707	2.02	UUCAUUGGGUUGAUUGUUGGAGCUA		OtherRNA	ShortStack
bdi-b1.0r1-11049	Brachypodium distachyon (Stiff brome) 1.0	1:46478005-46478335	-	543	1.55	CAAUGCUGGUGGAAUUGCUGAGAUGGCCGGC		OtherRNA	ShortStack
bdi-b1.0r1-11050	Brachypodium distachyon (Stiff brome) 1.0	1:46478448-46478509	-	109	0.31	UCAAUUGGUCUGUGGGC		OtherRNA	ShortStack
bdi-b1.0r1-11051	Brachypodium distachyon (Stiff brome) 1.0	1:46478584-46478999	-	974	2.78	UGGAACUCUGUUUUGCAG		OtherRNA	ShortStack
bdi-b1.0r1-11052	Brachypodium distachyon (Stiff brome) 1.0	1:46479081-46479697	-	1,084	3.10	GUGGUCUUGUGGUUCUUUACAUUACC		OtherRNA	ShortStack
bdi-b1.0r1-11053	Brachypodium distachyon (Stiff brome) 1.0	1:46480572-46480651	-	733	2.09	UAGGAUGAUGUUAAAAGCUGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-11112	Brachypodium distachyon (Stiff brome) 1.0	1:46682486-46682857	-	730	2.09	GUAGUAUGAGUUUUACUCUGUUCG		OtherRNA	ShortStack
bdi-b1.0r1-11150	Brachypodium distachyon (Stiff brome) 1.0	1:46828056-46828074	+	23	0.07	AUUUCGGGCUUUCGCCCGG		OtherRNA	ShortStack
bdi-b1.0r1-11167	Brachypodium distachyon (Stiff brome) 1.0	1:46892092-46892507	+	308	0.88	CAAGAUUGUCAACAAGUGGAACAC		OtherRNA	ShortStack
bdi-b1.0r1-11168	Brachypodium distachyon (Stiff brome) 1.0	1:46901636-46901742	+	81,747	233.51	GGGGAUGUAGCUCAGAUGGU		OtherRNA	ShortStack
bdi-b1.0r1-11173	Brachypodium distachyon (Stiff brome) 1.0	1:46913626-46913725	+	33,500	95.69	GGGGAUGUAGCUCAGA		OtherRNA	ShortStack
bdi-b1.0r1-11176	Brachypodium distachyon (Stiff brome) 1.0	1:46920971-46921101	+	284,327	812.17	GGGGAUGUAGCUCAGA		OtherRNA	ShortStack
bdi-b1.0r1-11208	Brachypodium distachyon (Stiff brome) 1.0	1:47051019-47052234	+	2,785	7.96	UCACGUCGAGGUACUGCAGA		OtherRNA	ShortStack
bdi-b1.0r1-11210	Brachypodium distachyon (Stiff brome) 1.0	1:47062222-47062239	+	276	0.79	AAUAGGGACAGUCGG	miR845	OtherRNA	ShortStack
bdi-b1.0r1-11211	Brachypodium distachyon (Stiff brome) 1.0	1:47068000-47068355	+	3,811	10.89	CUGAGAAUUUCUGGAAGGGCU		OtherRNA	ShortStack
bdi-b1.0r1-11230	Brachypodium distachyon (Stiff brome) 1.0	1:47126812-47126831	-	452	1.29	UCGCUUGUGCAGAUCUGGAC		OtherRNA	ShortStack
bdi-b1.0r1-11234	Brachypodium distachyon (Stiff brome) 1.0	1:47146264-47146993	.	7,105	20.30	GGGCGUUUGGUCUAGUGGUAUGAUUCUCGC		OtherRNA	ShortStack
bdi-b1.0r1-11252	Brachypodium distachyon (Stiff brome) 1.0	1:47263836-47263867	+	693	1.98	AUGGACAUUAAGAGAAACCUCUGGC		OtherRNA	ShortStack
bdi-b1.0r1-11276	Brachypodium distachyon (Stiff brome) 1.0	1:47379731-47379903	-	105,431	301.16	GUCGUUGUAGUAUAGUGGUAAGUAUU	miR6300	OtherRNA	ShortStack
bdi-b1.0r1-11306	Brachypodium distachyon (Stiff brome) 1.0	1:47504352-47504669	-	2,265	6.47	AUGAAUCGGGUAUAGAACC		OtherRNA	ShortStack
bdi-b1.0r1-11363	Brachypodium distachyon (Stiff brome) 1.0	1:47738223-47738681	-	1,449	4.14	UUUAAUUCAGCAGCAAUUU		OtherRNA	ShortStack
bdi-b1.0r1-11364	Brachypodium distachyon (Stiff brome) 1.0	1:47738840-47739585	.	2,327	6.65	CGACGCCGAGGGACUGGAAGAAGC		OtherRNA	ShortStack
bdi-b1.0r1-11376	Brachypodium distachyon (Stiff brome) 1.0	1:47769423-47769438	-	110	0.31	AAGGAAGCUAUAAGA		OtherRNA	ShortStack
bdi-b1.0r1-11393	Brachypodium distachyon (Stiff brome) 1.0	1:47837833-47837857	-	178	0.51	AAAAAGCUUGUAGUUGGACU		OtherRNA	ShortStack
bdi-b1.0r1-11417	Brachypodium distachyon (Stiff brome) 1.0	1:47962090-47962392	+	372	1.06	UUGGACCUGUGUAGUGGUUAUG		OtherRNA	ShortStack
bdi-b1.0r1-11436	Brachypodium distachyon (Stiff brome) 1.0	1:48021300-48021559	.	447	1.28	AGAAAGUGCUGUAGCUAGGGCGGU		OtherRNA	ShortStack
bdi-b1.0r1-11443	Brachypodium distachyon (Stiff brome) 1.0	1:48044587-48045261	.	1,583	4.52	CGUCGCACGGAUUCG	miR6054	OtherRNA	ShortStack
bdi-b1.0r1-11444	Brachypodium distachyon (Stiff brome) 1.0	1:48045439-48045803	-	346	0.99	ACAUGAUUGUGGAGAGGCUUG		OtherRNA	ShortStack
bdi-b1.0r1-11451	Brachypodium distachyon (Stiff brome) 1.0	1:48094407-48094564	+	7,411	21.17	UCUUCGGAGAUGGUAAAACCCUA		OtherRNA	ShortStack
bdi-b1.0r1-11474	Brachypodium distachyon (Stiff brome) 1.0	1:48159343-48160078	.	8,356	23.87	UUGCGACUGGAGUGAAGU		OtherRNA	ShortStack
bdi-b1.0r1-11486	Brachypodium distachyon (Stiff brome) 1.0	1:48195472-48195515	+	309	0.88	UAGAACUGUAGAAGCGACAAGG		OtherRNA	ShortStack
bdi-b1.0r1-11489	Brachypodium distachyon (Stiff brome) 1.0	1:48215484-48216597	.	5,081	14.51	AAGAGAAGGUAGUCGUACAUCUGA		OtherRNA	ShortStack
bdi-b1.0r1-11499	Brachypodium distachyon (Stiff brome) 1.0	1:48260006-48260819	.	3,274	9.35	AGGAUGUCUGACUGUAAUAUAUGC		OtherRNA	ShortStack
bdi-b1.0r1-11500	Brachypodium distachyon (Stiff brome) 1.0	1:48262830-48263013	-	1,334	3.81	GUGUAUUUGGCGGAAUUUGGCAUA		OtherRNA	ShortStack
bdi-b1.0r1-11505	Brachypodium distachyon (Stiff brome) 1.0	1:48299364-48300244	-	11,604	33.15	CGGUUAAUGGGGACGGACUG		OtherRNA	ShortStack
bdi-b1.0r1-11525	Brachypodium distachyon (Stiff brome) 1.0	1:48403695-48403711	-	1,241	3.55	CCCGGCGAGACCUCCA		OtherRNA	ShortStack
bdi-b1.0r1-11528	Brachypodium distachyon (Stiff brome) 1.0	1:48405219-48405593	+	1,083	3.09	AAGGAAGCUAUAAGA		OtherRNA	ShortStack
bdi-b1.0r1-11530	Brachypodium distachyon (Stiff brome) 1.0	1:48414313-48414414	-	1,916	5.47	AAUACACCGUCGGCAUAUAUGA		OtherRNA	ShortStack
bdi-b1.0r1-11531	Brachypodium distachyon (Stiff brome) 1.0	1:48414487-48414519	-	452	1.29	UCUGGAGCUUCGAGUGAAGGGCAGGGAUG		OtherRNA	ShortStack
bdi-b1.0r1-11535	Brachypodium distachyon (Stiff brome) 1.0	1:48423666-48424405	+	802	2.29	AAACCGGAGGAAGGUG		OtherRNA	ShortStack
bdi-b1.0r1-11565	Brachypodium distachyon (Stiff brome) 1.0	1:48604117-48604392	+	424	1.21	CUCAACCGCGAAGGAUCCA		OtherRNA	ShortStack
bdi-b1.0r1-11574	Brachypodium distachyon (Stiff brome) 1.0	1:48649191-48650015	-	910	2.60	CAAGUUCAAAUCGAGGAGC		OtherRNA	ShortStack
bdi-b1.0r1-11589	Brachypodium distachyon (Stiff brome) 1.0	1:48718992-48719018	+	672	1.92	UCGUAGUCGUCGGGC		OtherRNA	ShortStack
bdi-b1.0r1-11592	Brachypodium distachyon (Stiff brome) 1.0	1:48724729-48724746	-	174	0.50	ACAGACACGUCGAGCAG		OtherRNA	ShortStack
bdi-b1.0r1-11637	Brachypodium distachyon (Stiff brome) 1.0	1:48866261-48867293	-	889	2.54	CAAUGAAAUCGAGUA	miR5921	OtherRNA	ShortStack
bdi-b1.0r1-11638	Brachypodium distachyon (Stiff brome) 1.0	1:48867365-48867656	-	423	1.21	ACGAGAACACUGAAAGGAGGG		OtherRNA	ShortStack
bdi-b1.0r1-11647	Brachypodium distachyon (Stiff brome) 1.0	1:48907615-48907747	-	864	2.47	CGGCAGUGAGGAGAAAUUGA		OtherRNA	ShortStack
bdi-b1.0r1-11649	Brachypodium distachyon (Stiff brome) 1.0	1:48910699-48910716	+	2,132	6.09	AGCGGAGUAGAGCAGC		OtherRNA	ShortStack
bdi-b1.0r1-11651	Brachypodium distachyon (Stiff brome) 1.0	1:48912745-48912834	+	4,677	13.36	GUCGUUGUAGUAUAGUGGUAAGUAUU	miR6300	OtherRNA	ShortStack
bdi-b1.0r1-11653	Brachypodium distachyon (Stiff brome) 1.0	1:48915013-48915170	+	240	0.69	GCUAAGGAGCUGUACUUCAACAAG		OtherRNA	ShortStack
bdi-b1.0r1-11654	Brachypodium distachyon (Stiff brome) 1.0	1:48915323-48915420	+	373	1.07	GUGUUACAGUUGCAAGAGAGG		OtherRNA	ShortStack
bdi-b1.0r1-11655	Brachypodium distachyon (Stiff brome) 1.0	1:48915737-48915898	+	524	1.50	GGAGGAUCCUGUUGAAA		OtherRNA	ShortStack
bdi-b1.0r1-11656	Brachypodium distachyon (Stiff brome) 1.0	1:48916223-48917043	+	2,190	6.26	GUUGUCAACAAGCUUAGAGG		OtherRNA	ShortStack
bdi-b1.0r1-11657	Brachypodium distachyon (Stiff brome) 1.0	1:48917494-48917568	+	190	0.54	AAACAGAAACCGAACUUAAA		OtherRNA	ShortStack
bdi-b1.0r1-11658	Brachypodium distachyon (Stiff brome) 1.0	1:48917696-48917806	+	1,140	3.26	ACUCUGGAGAACGAGGAGCAGAAG		OtherRNA	ShortStack
bdi-b1.0r1-11659	Brachypodium distachyon (Stiff brome) 1.0	1:48917993-48918086	+	223	0.64	UGUUGUCACUGAGAAG		OtherRNA	ShortStack
bdi-b1.0r1-11660	Brachypodium distachyon (Stiff brome) 1.0	1:48918180-48918239	+	476	1.36	UACGAGGACUUGAUGGCUGC		OtherRNA	ShortStack
bdi-b1.0r1-11661	Brachypodium distachyon (Stiff brome) 1.0	1:48918916-48919176	+	735	2.10	UGAUGAACUACUGCCGAGUUUC		OtherRNA	ShortStack
bdi-b1.0r1-11669	Brachypodium distachyon (Stiff brome) 1.0	1:48977903-48977919	-	498	1.42	UCUACAGUCCGACGA		OtherRNA	ShortStack
bdi-b1.0r1-11687	Brachypodium distachyon (Stiff brome) 1.0	1:49046630-49046650	+	322	0.92	UGGGGGGACGGAUCGCG		OtherRNA	ShortStack
bdi-b1.0r1-11695	Brachypodium distachyon (Stiff brome) 1.0	1:49056672-49057222	.	1,120	3.20	UUGGAUUCCGUAGAACAUCUAGUC		OtherRNA	ShortStack
bdi-b1.0r1-11717	Brachypodium distachyon (Stiff brome) 1.0	1:49173077-49173217	.	479	1.37	GGUGGCUGUAGUUUA		OtherRNA	ShortStack
bdi-b1.0r1-11721	Brachypodium distachyon (Stiff brome) 1.0	1:49213247-49213541	-	1,265	3.61	UCUGAUCAGUGGAGACGAGACAUCA		OtherRNA	ShortStack
bdi-b1.0r1-11751	Brachypodium distachyon (Stiff brome) 1.0	1:49280555-49280925	.	2,575	7.36	UAGAGCUGUAGCUAUGAGUGC		OtherRNA	ShortStack
bdi-b1.0r1-11826	Brachypodium distachyon (Stiff brome) 1.0	1:49571863-49571902	-	21	0.06	AAAAUCUCUCCGUGUGA		OtherRNA	ShortStack
bdi-b1.0r1-11838	Brachypodium distachyon (Stiff brome) 1.0	1:49614798-49614818	-	151	0.43	UUUGGAUUGAAGGGAGUC		OtherRNA	ShortStack
bdi-b1.0r1-11854	Brachypodium distachyon (Stiff brome) 1.0	1:49670114-49670248	+	9,066	25.90	GCACCAGUGGUCUAGUGGUAGAAUAGUACC		OtherRNA	ShortStack
bdi-b1.0r1-11887	Brachypodium distachyon (Stiff brome) 1.0	1:49781556-49781735	+	575	1.64	CAUUAGGCACUUGUAGCAACUCC		OtherRNA	ShortStack
bdi-b1.0r1-11892	Brachypodium distachyon (Stiff brome) 1.0	1:49793477-49793702	-	4,830	13.80	CUGAGAAUUGUUUAUGUA		OtherRNA	ShortStack
bdi-b1.0r1-11908	Brachypodium distachyon (Stiff brome) 1.0	1:49829846-49830228	+	570,754	1,630.34	GGGGAUGUAGCUCAGA		OtherRNA	ShortStack
bdi-b1.0r1-11979	Brachypodium distachyon (Stiff brome) 1.0	1:50050499-50050665	+	55	0.16	CGGAAGGCCUGUGAUUA		OtherRNA	ShortStack
bdi-b1.0r1-11980	Brachypodium distachyon (Stiff brome) 1.0	1:50050801-50050911	.	64	0.18	AUAUGUCACAGAAGAGCUCUGGUA		OtherRNA	ShortStack
bdi-b1.0r1-11981	Brachypodium distachyon (Stiff brome) 1.0	1:50052471-50052771	+	217	0.62	GUAGAAUAAAACAAAUGGUUU		OtherRNA	ShortStack
bdi-b1.0r1-11988	Brachypodium distachyon (Stiff brome) 1.0	1:50080581-50081055	+	1,351	3.86	CUUUUUAAGACUGAUGCUU		OtherRNA	ShortStack
bdi-b1.0r1-11992	Brachypodium distachyon (Stiff brome) 1.0	1:50091386-50091524	+	216	0.62	UGCUGGACAAGUCGGUCAACAC		OtherRNA	ShortStack
bdi-b1.0r1-11993	Brachypodium distachyon (Stiff brome) 1.0	1:50092312-50092412	+	163	0.47	CGGAUUGGCACUUGCCGAGAAGCA		OtherRNA	ShortStack
bdi-b1.0r1-11994	Brachypodium distachyon (Stiff brome) 1.0	1:50092463-50092781	+	563	1.61	CAGAGGAUGUGAGCACCCGCUUUG		OtherRNA	ShortStack
bdi-b1.0r1-11995	Brachypodium distachyon (Stiff brome) 1.0	1:50092885-50093248	+	287	0.82	GUUUGCAUGGACUGUUGCAG		OtherRNA	ShortStack
bdi-b1.0r1-11996	Brachypodium distachyon (Stiff brome) 1.0	1:50093363-50094611	+	2,403	6.86	UUUCGAGCCUGAAGAUUGGAAUAAU		OtherRNA	ShortStack
bdi-b1.0r1-12033	Brachypodium distachyon (Stiff brome) 1.0	1:50184004-50184021	-	256	0.73	CACUCGCACGGAUUCGU		OtherRNA	ShortStack
bdi-b1.0r1-12043	Brachypodium distachyon (Stiff brome) 1.0	1:50222022-50222101	+	30,430	86.92	GUCGUUGUAGUAUAGUGGUAAGUAUUCCCGCC	miR6300	OtherRNA	ShortStack
bdi-b1.0r1-12047	Brachypodium distachyon (Stiff brome) 1.0	1:50233424-50233903	.	1,119	3.20	GUUGCUGGUGUAGUGGU		OtherRNA	ShortStack
bdi-b1.0r1-12066	Brachypodium distachyon (Stiff brome) 1.0	1:50328888-50328931	-	569	1.63	GAGUUCGAUUGUUGAGGGCGGCCUCU		OtherRNA	ShortStack
bdi-b1.0r1-12077	Brachypodium distachyon (Stiff brome) 1.0	1:50403368-50403385	+	391	1.12	CCUGUGAUCCGGAGAUUU		OtherRNA	ShortStack
bdi-b1.0r1-12095	Brachypodium distachyon (Stiff brome) 1.0	1:50441985-50442299	+	300	0.86	GGGACGAACAAGUACC		OtherRNA	ShortStack
bdi-b1.0r1-12096	Brachypodium distachyon (Stiff brome) 1.0	1:50443157-50443260	+	177	0.51	CUGCCGACCACGCCA		OtherRNA	ShortStack
bdi-b1.0r1-12097	Brachypodium distachyon (Stiff brome) 1.0	1:50443563-50443773	+	399	1.14	AUGUGUGGACUAAAAGGCAUGG		OtherRNA	ShortStack
bdi-b1.0r1-12098	Brachypodium distachyon (Stiff brome) 1.0	1:50443913-50444155	+	319	0.91	GCAACUGAAGAAGAGCGAGCAAUG		OtherRNA	ShortStack
bdi-b1.0r1-12155	Brachypodium distachyon (Stiff brome) 1.0	1:50733187-50734001	+	2,437	6.96	CCAUGGCGCAGGACGUGCUGCUGG		OtherRNA	ShortStack
bdi-b1.0r1-12173	Brachypodium distachyon (Stiff brome) 1.0	1:50812762-50812985	-	1,200	3.43	UCAAAGAUAUAGGACUAAAACUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-12254	Brachypodium distachyon (Stiff brome) 1.0	1:51145659-51146174	.	1,092	3.12	UCCGGUGUGGGCGUUAG		OtherRNA	ShortStack
bdi-b1.0r1-12261	Brachypodium distachyon (Stiff brome) 1.0	1:51261431-51261446	-	53	0.15	CAGAUUAGGCUCUGGUC		OtherRNA	ShortStack
bdi-b1.0r1-12291	Brachypodium distachyon (Stiff brome) 1.0	1:51423887-51424090	+	1,583	4.52	GUGGUCGUGCCGGAGUGGUU		OtherRNA	ShortStack
bdi-b1.0r1-12296	Brachypodium distachyon (Stiff brome) 1.0	1:51468421-51468649	+	3,523	10.06	GGUUUCGUGGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-12310	Brachypodium distachyon (Stiff brome) 1.0	1:51518318-51518421	-	171	0.49	CGGUACGUGAGCUGGG		OtherRNA	ShortStack
bdi-b1.0r1-12329	Brachypodium distachyon (Stiff brome) 1.0	1:51574393-51574871	-	851	2.43	UUUCCUGACGUUUGUAUUGUACAG		OtherRNA	ShortStack
bdi-b1.0r1-12362	Brachypodium distachyon (Stiff brome) 1.0	1:51700577-51700876	+	880	2.51	ACGUGGACUAAAUGGCACUGGCCGGC		OtherRNA	ShortStack
bdi-b1.0r1-12366	Brachypodium distachyon (Stiff brome) 1.0	1:51712493-51712663	+	761	2.17	CAAUUGAGAUCGGUAACUUGCUGACUA		OtherRNA	ShortStack
bdi-b1.0r1-12390	Brachypodium distachyon (Stiff brome) 1.0	1:51800806-51802219	.	3,721	10.63	AGAGAUCAACUGUCGGUUGUCGGC		OtherRNA	ShortStack
bdi-b1.0r1-12418	Brachypodium distachyon (Stiff brome) 1.0	1:51893140-51893416	+	795	2.27	GUAGAAUUUCCAGGC		OtherRNA	ShortStack
bdi-b1.0r1-12439	Brachypodium distachyon (Stiff brome) 1.0	1:52009621-52010554	.	1,867	5.33	GAGGUGUAGGAUAAG		OtherRNA	ShortStack
bdi-b1.0r1-12447	Brachypodium distachyon (Stiff brome) 1.0	1:52044995-52045048	+	511	1.46	CAAGAUUGACUCUGAGGGC		OtherRNA	ShortStack
bdi-b1.0r1-12473	Brachypodium distachyon (Stiff brome) 1.0	1:52154940-52155877	-	732	2.09	UGCUGGAGUUGGAAUGAGGGCAUC		OtherRNA	ShortStack
bdi-b1.0r1-12497	Brachypodium distachyon (Stiff brome) 1.0	1:52256688-52256919	+	272	0.78	AGGGAUACAGAUCUGGACAUUAUC		OtherRNA	ShortStack
bdi-b1.0r1-12499	Brachypodium distachyon (Stiff brome) 1.0	1:52261647-52262520	+	540	1.54	AAGGAACAAUGAUGAUG		OtherRNA	ShortStack
bdi-b1.0r1-12570	Brachypodium distachyon (Stiff brome) 1.0	1:52546421-52546858	.	1,002	2.86	UAUGGGACGGAGGGAGUAGAUGAC		OtherRNA	ShortStack
bdi-b1.0r1-12587	Brachypodium distachyon (Stiff brome) 1.0	1:52607506-52607538	-	486	1.39	UUUUGCUGUUGGGUUGUAGACUUAUGCC		OtherRNA	ShortStack
bdi-b1.0r1-12592	Brachypodium distachyon (Stiff brome) 1.0	1:52632226-52632421	+	245	0.70	UGAGCCUGGAGAAGAGAUUUGGACA		OtherRNA	ShortStack
bdi-b1.0r1-12593	Brachypodium distachyon (Stiff brome) 1.0	1:52633553-52633705	+	357	1.02	UGGGAGAUUGUAGAGACAGAAAA		OtherRNA	ShortStack
bdi-b1.0r1-12602	Brachypodium distachyon (Stiff brome) 1.0	1:52658024-52658201	.	312	0.89	GCGGGUAUAGUUUAGA		OtherRNA	ShortStack
bdi-b1.0r1-12603	Brachypodium distachyon (Stiff brome) 1.0	1:52661289-52661497	-	439	1.25	GUAAGAAUUUUGGCAUUGGC		OtherRNA	ShortStack
bdi-b1.0r1-12608	Brachypodium distachyon (Stiff brome) 1.0	1:52676345-52676363	+	1,295	3.70	AAGAACGAUUUGAAC		OtherRNA	ShortStack
bdi-b1.0r1-12626	Brachypodium distachyon (Stiff brome) 1.0	1:52741069-52741678	+	415	1.19	GCAGAACUCUCAAGGAUUUGGAAGGG		OtherRNA	ShortStack
bdi-b1.0r1-12643	Brachypodium distachyon (Stiff brome) 1.0	1:52805214-52805243	-	20	0.06	AAUAAUGACUGUUUGACUUGUGC		OtherRNA	ShortStack
bdi-b1.0r1-12657	Brachypodium distachyon (Stiff brome) 1.0	1:52860854-52860954	-	173	0.49	UUUUUUAAUCGGUACUGCAGUAGC		OtherRNA	ShortStack
bdi-b1.0r1-12658	Brachypodium distachyon (Stiff brome) 1.0	1:52861192-52861264	-	277	0.79	UUCUACAGGUCCGACGAU		OtherRNA	ShortStack
bdi-b1.0r1-12659	Brachypodium distachyon (Stiff brome) 1.0	1:52867281-52867349	+	372	1.06	CUCGCCGGAGCAGCGUGCGGC		OtherRNA	ShortStack
bdi-b1.0r1-12680	Brachypodium distachyon (Stiff brome) 1.0	1:52934010-52934116	+	2,322	6.63	AUCAGAGUGGCGCAGCGGAAGCGUGGUGGGCCCA		OtherRNA	ShortStack
bdi-b1.0r1-12744	Brachypodium distachyon (Stiff brome) 1.0	1:53173250-53173332	+	1,842	5.26	AGUGGUAGAGCAAUUGACUGCA		OtherRNA	ShortStack
bdi-b1.0r1-12760	Brachypodium distachyon (Stiff brome) 1.0	1:53225227-53225416	+	446	1.27	UUUGGACCCAUAGGAAGAAG		OtherRNA	ShortStack
bdi-b1.0r1-12776	Brachypodium distachyon (Stiff brome) 1.0	1:53273203-53273234	-	250	0.71	GAAUAGGGGAGGCGUA		OtherRNA	ShortStack
bdi-b1.0r1-12816	Brachypodium distachyon (Stiff brome) 1.0	1:53364897-53364978	.	204	0.58	GGUGAUCGACGGGAUGAGACGGUA		OtherRNA	ShortStack
bdi-b1.0r1-12821	Brachypodium distachyon (Stiff brome) 1.0	1:53385616-53386053	.	1,688	4.82	AAUUCUCGGGUGAGA		OtherRNA	ShortStack
bdi-b1.0r1-12848	Brachypodium distachyon (Stiff brome) 1.0	1:53486899-53487240	+	297	0.85	CUAUCUUUUGAUUAGG		OtherRNA	ShortStack
bdi-b1.0r1-12851	Brachypodium distachyon (Stiff brome) 1.0	1:53493151-53493474	+	188	0.54	UAGAGUUUGGGACUUCAG		OtherRNA	ShortStack
bdi-b1.0r1-12863	Brachypodium distachyon (Stiff brome) 1.0	1:53533676-53533769	-	2,562	7.32	ACAACGUGCGGUUGGACGGACUGGC		OtherRNA	ShortStack
bdi-b1.0r1-12925	Brachypodium distachyon (Stiff brome) 1.0	1:53727891-53727909	+	68	0.19	GCAUCCAUGGCUGAAUGGA		OtherRNA	ShortStack
bdi-b1.0r1-12933	Brachypodium distachyon (Stiff brome) 1.0	1:53759449-53759630	.	898	2.57	AGCAGAGACUCAGUGAAAU		OtherRNA	ShortStack
bdi-b1.0r1-12954	Brachypodium distachyon (Stiff brome) 1.0	1:53829362-53829382	+	97	0.28	UAAUUAAUGAUCUGG		OtherRNA	ShortStack
bdi-b1.0r1-12955	Brachypodium distachyon (Stiff brome) 1.0	1:53830108-53830138	+	906	2.59	UUCAACUUGGCCUGUAACUUGUAAGGAUC		OtherRNA	ShortStack
bdi-b1.0r1-12974	Brachypodium distachyon (Stiff brome) 1.0	1:53899757-53899968	-	481	1.37	GGAGAGAUGGCUGAUUGGUU		OtherRNA	ShortStack
bdi-b1.0r1-12985	Brachypodium distachyon (Stiff brome) 1.0	1:53950617-53950632	-	171	0.49	GUGGAUGUAGCUCAA	miR2355	OtherRNA	ShortStack
bdi-b1.0r1-12988	Brachypodium distachyon (Stiff brome) 1.0	1:53963975-53964975	-	2,916	8.33	AGGACUGGGUAUCCAUGCC		OtherRNA	ShortStack
bdi-b1.0r1-12990	Brachypodium distachyon (Stiff brome) 1.0	1:53968036-53968670	-	1,056	3.02	AAGGCCAAGGACUCUGUUGGCAU		OtherRNA	ShortStack
bdi-b1.0r1-13028	Brachypodium distachyon (Stiff brome) 1.0	1:54084438-54084667	+	177	0.51	CUGACUGAUGAUACUCUGCAG		OtherRNA	ShortStack
bdi-b1.0r1-13048	Brachypodium distachyon (Stiff brome) 1.0	1:54151527-54151553	-	449	1.28	AUGUGUAGGAUUAGUGUAGGUUCUG		OtherRNA	ShortStack
bdi-b1.0r1-13063	Brachypodium distachyon (Stiff brome) 1.0	1:54219556-54219680	-	174	0.50	CACAGAGAGUAGUAUCAAUCA		OtherRNA	ShortStack
bdi-b1.0r1-13068	Brachypodium distachyon (Stiff brome) 1.0	1:54229559-54229799	+	220	0.63	ACGAAAUCUCCAAACGAAUGCAUGA		OtherRNA	ShortStack
bdi-b1.0r1-13074	Brachypodium distachyon (Stiff brome) 1.0	1:54248592-54248996	-	680	1.94	CGGGAAGGAGAUUGCAGCUCUGG		OtherRNA	ShortStack
bdi-b1.0r1-13075	Brachypodium distachyon (Stiff brome) 1.0	1:54249930-54250181	-	183	0.52	UGGGGCUCGGGACUGGGUCCACGG		OtherRNA	ShortStack
bdi-b1.0r1-13087	Brachypodium distachyon (Stiff brome) 1.0	1:54274165-54274250	-	1,673	4.78	GCGGGGAUAGCUCAGUUGGG		OtherRNA	ShortStack
bdi-b1.0r1-13119	Brachypodium distachyon (Stiff brome) 1.0	1:54408273-54408812	.	7,913	22.60	UUGGAAGAAGAACUAGAAAAAGA		OtherRNA	ShortStack
bdi-b1.0r1-13155	Brachypodium distachyon (Stiff brome) 1.0	1:54678193-54679129	.	3,109	8.88	GGGACAGUCGGGGGC		OtherRNA	ShortStack
bdi-b1.0r1-13162	Brachypodium distachyon (Stiff brome) 1.0	1:54724268-54724564	-	3,220,283	9,198.66	GGGAUUGUAGUUCAAUUGGUCAGAGCACC		OtherRNA	ShortStack
bdi-b1.0r1-13163	Brachypodium distachyon (Stiff brome) 1.0	1:54724951-54725740	-	20,126	57.49	GCCCCUAUCGUCUAGUGG		OtherRNA	ShortStack
bdi-b1.0r1-13164	Brachypodium distachyon (Stiff brome) 1.0	1:54726303-54726523	+	7,543	21.55	GCGGGUAUAGUUUAGUGGUA		OtherRNA	ShortStack
bdi-b1.0r1-13165	Brachypodium distachyon (Stiff brome) 1.0	1:54726697-54727068	+	2,994	8.55	AGUAAGUAGAUUAGAUGGAUUUAG		OtherRNA	ShortStack
bdi-b1.0r1-13166	Brachypodium distachyon (Stiff brome) 1.0	1:54727236-54727375	+	557,777	1,593.28	AGCGGAGUAGAGCAGUU		OtherRNA	ShortStack
bdi-b1.0r1-13167	Brachypodium distachyon (Stiff brome) 1.0	1:54727600-54727628	-	169	0.48	AUAGAACUCUCCAACAGGGG		OtherRNA	ShortStack
bdi-b1.0r1-13168	Brachypodium distachyon (Stiff brome) 1.0	1:54728074-54729046	.	9,375	26.78	UUAUGGAUUGGUCUAGUCU		OtherRNA	ShortStack
bdi-b1.0r1-13169	Brachypodium distachyon (Stiff brome) 1.0	1:54729123-54730373	-	11,297	32.27	UGAACCAGACAAAACAACAAGC		OtherRNA	ShortStack
bdi-b1.0r1-13170	Brachypodium distachyon (Stiff brome) 1.0	1:54730481-54731531	-	16,929	48.36	UAAUUGGACGUUGAACC		OtherRNA	ShortStack
bdi-b1.0r1-13230	Brachypodium distachyon (Stiff brome) 1.0	1:54910869-54910958	-	2,374	6.78	AAGAUCUCUGAGGCCUU		OtherRNA	ShortStack
bdi-b1.0r1-13231	Brachypodium distachyon (Stiff brome) 1.0	1:54911033-54911368	-	3,038	8.68	GAGGGAUGAUGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-13234	Brachypodium distachyon (Stiff brome) 1.0	1:54915741-54918238	-	19,149	54.70	GCACCAGUGGUCUAGUGGUAGAAUAGUACC		OtherRNA	ShortStack
bdi-b1.0r1-13255	Brachypodium distachyon (Stiff brome) 1.0	1:55046597-55046835	+	15,857	45.30	AUACAAGCGUUGUGCUGCUAGGC		OtherRNA	ShortStack
bdi-b1.0r1-13256	Brachypodium distachyon (Stiff brome) 1.0	1:55046923-55047097	+	8,631	24.65	CCAAGCAGUGGGAGGGGAAAGUGAUCUCUGA		OtherRNA	ShortStack
bdi-b1.0r1-13264	Brachypodium distachyon (Stiff brome) 1.0	1:55078358-55078895	.	804	2.30	CCUGGGCAGCAACACCA	miR5059	OtherRNA	ShortStack
bdi-MIR5059-m1	Brachypodium distachyon (Stiff brome) 1.0	1:55078377-55078452	+	296	0.85	CCUGGGCAGCAACACCA	miR5059	OtherRNA	miRBase21-BestBlastHit
bdi-b1.0r1-13276	Brachypodium distachyon (Stiff brome) 1.0	1:55109001-55109282	-	1,669	4.77	AUGAAGGUAGUAGUUUCAAAAUGG	miR7723	OtherRNA	ShortStack
bdi-b1.0r1-13287	Brachypodium distachyon (Stiff brome) 1.0	1:55133423-55134556	.	2,916	8.33	UUCUCACGGAGGCGGUA		OtherRNA	ShortStack
bdi-b1.0r1-13289	Brachypodium distachyon (Stiff brome) 1.0	1:55143460-55143639	-	998	2.85	UGUUGCCCGAUGUGCUUGC		OtherRNA	ShortStack
bdi-b1.0r1-13297	Brachypodium distachyon (Stiff brome) 1.0	1:55153063-55154082	-	6,506	18.58	GAUCGGUCGAUCAUCGGAGAAGA		OtherRNA	ShortStack
bdi-b1.0r1-13312	Brachypodium distachyon (Stiff brome) 1.0	1:55191019-55191158	+	4,749	13.57	CGGAUAAAAGUUACUCUAGGGAUAACA		OtherRNA	ShortStack
bdi-b1.0r1-13313	Brachypodium distachyon (Stiff brome) 1.0	1:55192051-55192316	.	482	1.38	AAUUACUACUGUAGGAAU		OtherRNA	ShortStack
bdi-b1.0r1-13314	Brachypodium distachyon (Stiff brome) 1.0	1:55192345-55192985	-	239,264	683.45	GGUAGUUCGACCGCGGAAUUU		OtherRNA	ShortStack
bdi-b1.0r1-13382	Brachypodium distachyon (Stiff brome) 1.0	1:55523590-55523706	+	106,558	304.38	GCGUCUGUAGUCCAACGGUUAGGAUA		OtherRNA	ShortStack
bdi-b1.0r1-13414	Brachypodium distachyon (Stiff brome) 1.0	1:55649767-55649815	+	1,014	2.90	AAUAUUGGACAAUGGGCGAAAGC		OtherRNA	ShortStack
bdi-b1.0r1-13418	Brachypodium distachyon (Stiff brome) 1.0	1:55675666-55675756	-	1,553	4.44	GUAGAGCAAUUGACUGCAGAUCAAUAGG		OtherRNA	ShortStack
bdi-b1.0r1-13419	Brachypodium distachyon (Stiff brome) 1.0	1:55676783-55676891	-	1,946	5.56	GGGUCCAUAGCUCAGUGG		OtherRNA	ShortStack
bdi-b1.0r1-13445	Brachypodium distachyon (Stiff brome) 1.0	1:55786995-55787208	.	470	1.34	CCGGCGAGACCUCCA		OtherRNA	ShortStack
bdi-b1.0r1-13476	Brachypodium distachyon (Stiff brome) 1.0	1:55890222-55890304	-	340	0.97	AUGUGACUGUAUUAAUACUUUUGAAAGGU		OtherRNA	ShortStack
bdi-MIR7724b-m1	Brachypodium distachyon (Stiff brome) 1.0	1:56080928-56081097	-	563	1.61	UUGGCCCACAUUGACAUGUUCACC	miR7724	OtherRNA	miRBase21-BestBlastHit
bdi-b1.0r1-13572	Brachypodium distachyon (Stiff brome) 1.0	1:56222348-56222366	-	661	1.89	AAGCGGUGGAUGAUGUG	miR2	OtherRNA	ShortStack
bdi-b1.0r1-13578	Brachypodium distachyon (Stiff brome) 1.0	1:56247553-56247655	-	4,424	12.64	UCCAUUGUCGUCCAGC		OtherRNA	ShortStack
bdi-b1.0r1-13584	Brachypodium distachyon (Stiff brome) 1.0	1:56290345-56290688	+	91,989	262.76	CCCAUAGAAUCUGAGCGC		OtherRNA	ShortStack
bdi-b1.0r1-13585	Brachypodium distachyon (Stiff brome) 1.0	1:56290786-56290952	+	1,178	3.37	CGGAUUGGUUCUUGGAAAUUU		OtherRNA	ShortStack
bdi-b1.0r1-13586	Brachypodium distachyon (Stiff brome) 1.0	1:56291068-56291219	+	23,936	68.37	CAUAGAAUCUGAGCACC		OtherRNA	ShortStack
bdi-b1.0r1-13665	Brachypodium distachyon (Stiff brome) 1.0	1:56682862-56682948	+	407	1.16	GCUUUCGUAGCUCAGUUGG		OtherRNA	ShortStack
bdi-b1.0r1-13667	Brachypodium distachyon (Stiff brome) 1.0	1:56684935-56684957	-	388	1.11	AACUAAUUUGAACUGU		OtherRNA	ShortStack
bdi-b1.0r1-13695	Brachypodium distachyon (Stiff brome) 1.0	1:56760237-56760561	.	578	1.65	UUCUGAAUCACCCUGUAGAAUGGC		OtherRNA	ShortStack
bdi-b1.0r1-13733	Brachypodium distachyon (Stiff brome) 1.0	1:56950106-56950352	-	1,538	4.39	AAUUGCACUCACUUCUGAUCCCA		OtherRNA	ShortStack
bdi-b1.0r1-13734	Brachypodium distachyon (Stiff brome) 1.0	1:56950466-56950613	-	1,243	3.55	AUUCCUCCUACUCAUUCUGAAUGC		OtherRNA	ShortStack
bdi-b1.0r1-13741	Brachypodium distachyon (Stiff brome) 1.0	1:56997524-56997580	.	256	0.73	AAGGACAAUUUAGUAUGAACAACAA		OtherRNA	ShortStack
bdi-b1.0r1-13745	Brachypodium distachyon (Stiff brome) 1.0	1:57010421-57011395	+	3,998	11.42	GCAAGACCGACUCUGAG		OtherRNA	ShortStack
bdi-b1.0r1-13756	Brachypodium distachyon (Stiff brome) 1.0	1:57070493-57070594	-	896	2.56	GGUUUCGUGGUGUAG		OtherRNA	ShortStack
bdi-b1.0r1-13758	Brachypodium distachyon (Stiff brome) 1.0	1:57074511-57074542	-	421	1.20	CAAGGAUUGACAGACUGA		OtherRNA	ShortStack
bdi-b1.0r1-13764	Brachypodium distachyon (Stiff brome) 1.0	1:57107407-57107487	+	1,633	4.67	GCCUCCGUAGCAUAGUGGU		OtherRNA	ShortStack
bdi-b1.0r1-13786	Brachypodium distachyon (Stiff brome) 1.0	1:57186519-57186680	+	152	0.43	CAAAGCAAUUAAGCAAAA	miR168	OtherRNA	ShortStack
bdi-b1.0r1-13787	Brachypodium distachyon (Stiff brome) 1.0	1:57186768-57187362	+	2,889	8.25	CAAGCCGACGAUCUG		OtherRNA	ShortStack
bdi-b1.0r1-13820	Brachypodium distachyon (Stiff brome) 1.0	1:57311100-57311241	+	202	0.58	AAGUGGCUGCAGACGAUCACGACGCUGC		OtherRNA	ShortStack
bdi-b1.0r1-13821	Brachypodium distachyon (Stiff brome) 1.0	1:57311460-57311781	+	249	0.71	AGAAGCUCGGCGUCAUGCCCUCGCGC		OtherRNA	ShortStack
bdi-b1.0r1-13885	Brachypodium distachyon (Stiff brome) 1.0	1:57546374-57546589	-	355	1.01	AACCUGGCUCUGAUACCA	miR5139	OtherRNA	ShortStack
bdi-b1.0r1-13890	Brachypodium distachyon (Stiff brome) 1.0	1:57551151-57551544	.	4,741	13.54	UCGGAAUGCCCCCCA		OtherRNA	ShortStack
bdi-b1.0r1-13914	Brachypodium distachyon (Stiff brome) 1.0	1:57691376-57691748	+	278	0.79	AACAAGCUGCAAGAUAUGACCGAG		OtherRNA	ShortStack
bdi-b1.0r1-13945	Brachypodium distachyon (Stiff brome) 1.0	1:57891043-57891526	-	4,256	12.16	AAGGAUUUGUAUUACUGAGUACUC		OtherRNA	ShortStack
bdi-b1.0r1-14011	Brachypodium distachyon (Stiff brome) 1.0	1:58102252-58102582	-	652	1.86	ACUUCUUAAAGGGACUGUCGG		OtherRNA	ShortStack
bdi-b1.0r1-14021	Brachypodium distachyon (Stiff brome) 1.0	1:58142307-58142462	+	860	2.46	GUAAAAUUUGUACAAAAUGUCGACUG		OtherRNA	ShortStack
bdi-b1.0r1-14049	Brachypodium distachyon (Stiff brome) 1.0	1:58230560-58231020	-	630	1.80	UUGGAACUGAGUGGAUGACUGG		OtherRNA	ShortStack
bdi-b1.0r1-14076	Brachypodium distachyon (Stiff brome) 1.0	1:58342541-58342834	-	233	0.67	AAGCUGUAACUAUCUUGAAGAAA		OtherRNA	ShortStack
bdi-b1.0r1-14077	Brachypodium distachyon (Stiff brome) 1.0	1:58347181-58347414	-	588	1.68	GGAGCUGAACGAGAACGUGAAGAAGG		OtherRNA	ShortStack
bdi-b1.0r1-14081	Brachypodium distachyon (Stiff brome) 1.0	1:58370784-58370954	+	73,947	211.23	GUCGUUGUAGUAUAGUGGUAAGUAUUCCCGC	miR6300	OtherRNA	ShortStack
bdi-b1.0r1-14082	Brachypodium distachyon (Stiff brome) 1.0	1:58387886-58388007	+	9,138	26.10	UGGGAUGAUGCAGAAACUUGGACUGAU		OtherRNA	ShortStack
bdi-b1.0r1-14083	Brachypodium distachyon (Stiff brome) 1.0	1:58388123-58388207	+	24,409	69.72	UUAGGAUGAUGCAGAAACUCGGACCA		OtherRNA	ShortStack
bdi-b1.0r1-14084	Brachypodium distachyon (Stiff brome) 1.0	1:58388336-58388565	+	12,036	34.38	UGGGAUGACGCAGAAACUCGGACUGA		OtherRNA	ShortStack
bdi-b1.0r1-14090	Brachypodium distachyon (Stiff brome) 1.0	1:58412916-58413021	-	328	0.94	CCUCUGGGCGCGGUUGGCC		OtherRNA	ShortStack
bdi-b1.0r1-14111	Brachypodium distachyon (Stiff brome) 1.0	1:58529672-58529698	+	535	1.53	CUAGUACGAGAGGACCG		OtherRNA	ShortStack
bdi-b1.0r1-14152	Brachypodium distachyon (Stiff brome) 1.0	1:58767031-58767049	+	473	1.35	UAGAGCAUUGAGAGGAC		OtherRNA	ShortStack
bdi-b1.0r1-14177	Brachypodium distachyon (Stiff brome) 1.0	1:58862379-58862397	+	531	1.52	UCGUGACCCUGACCAUU		OtherRNA	ShortStack
bdi-b1.0r1-14249	Brachypodium distachyon (Stiff brome) 1.0	1:59348018-59348033	+	119	0.34	GGGGAUGAAGCUCAA		OtherRNA	ShortStack
bdi-b1.0r1-14259	Brachypodium distachyon (Stiff brome) 1.0	1:59380988-59381078	+	1,524	4.35	GACGCUUUGGCCGAGUGGUUAA		OtherRNA	ShortStack
bdi-b1.0r1-14266	Brachypodium distachyon (Stiff brome) 1.0	1:59410204-59410394	-	1,505	4.30	CUCAAACAAGAGAAAGAAACAUAC		OtherRNA	ShortStack
bdi-b1.0r1-14319	Brachypodium distachyon (Stiff brome) 1.0	1:59637415-59637523	+	93	0.27	GUACUCUGAGUCACAAAGGCGACUCACC		OtherRNA	ShortStack
bdi-b1.0r1-14320	Brachypodium distachyon (Stiff brome) 1.0	1:59637619-59637882	+	399	1.14	ACUGGUCUGGUUGAGCUAUAUGGACGGA		OtherRNA	ShortStack
bdi-b1.0r1-14373	Brachypodium distachyon (Stiff brome) 1.0	1:59800394-59801277	+	75,324	215.16	UACGGCACUGAAGUAUG		OtherRNA	ShortStack
bdi-b1.0r1-14451	Brachypodium distachyon (Stiff brome) 1.0	1:60089398-60089643	-	578	1.65	UCUGUGCAAGAUAGUGCUGACAAG		OtherRNA	ShortStack
bdi-b1.0r1-14462	Brachypodium distachyon (Stiff brome) 1.0	1:60114682-60114947	+	519	1.48	UCUUCCUGGCUUGACUGAUACUGAGAA		OtherRNA	ShortStack
bdi-b1.0r1-14463	Brachypodium distachyon (Stiff brome) 1.0	1:60115133-60115584	+	1,206	3.45	GUUUCUACUUUCGUCUUGCUUGCUU		OtherRNA	ShortStack
bdi-b1.0r1-14493	Brachypodium distachyon (Stiff brome) 1.0	1:60208222-60208238	-	578	1.65	CAGAGGAACUUGAACG		OtherRNA	ShortStack
bdi-b1.0r1-14494	Brachypodium distachyon (Stiff brome) 1.0	1:60209218-60209248	-	226	0.65	UGUAUAUGGAGGACAG		OtherRNA	ShortStack
bdi-b1.0r1-14497	Brachypodium distachyon (Stiff brome) 1.0	1:60215592-60215835	-	400	1.14	AUUAGUACUGUAAGCCAC		OtherRNA	ShortStack
bdi-b1.0r1-14523	Brachypodium distachyon (Stiff brome) 1.0	1:60288245-60288388	-	481	1.37	GGAGAGAUGGCCGAG	miR678	OtherRNA	ShortStack
bdi-b1.0r1-14549	Brachypodium distachyon (Stiff brome) 1.0	1:60384319-60384427	+	2,953	8.44	AAACCCCGAACCAUAUCCGGAUUUUU		OtherRNA	ShortStack
bdi-b1.0r1-14569	Brachypodium distachyon (Stiff brome) 1.0	1:60424107-60424412	+	317	0.91	AUGCUGUCAAUGUUGAG		OtherRNA	ShortStack
bdi-b1.0r1-14570	Brachypodium distachyon (Stiff brome) 1.0	1:60424506-60424771	+	571	1.63	GAUGAGGAUGAUGAAG	miR414	OtherRNA	ShortStack
bdi-b1.0r1-14571	Brachypodium distachyon (Stiff brome) 1.0	1:60424851-60424912	+	40	0.11	UUGAUGAGGAUGAAGAUGACAUUGCU		OtherRNA	ShortStack
bdi-b1.0r1-14572	Brachypodium distachyon (Stiff brome) 1.0	1:60425627-60425948	+	297	0.85	AAAGUUACUGUUGAUGUUGGACGUGC		OtherRNA	ShortStack
bdi-b1.0r1-14574	Brachypodium distachyon (Stiff brome) 1.0	1:60447916-60448061	-	1,402	4.01	AAUGUCCUUUUCAUUCUGAGUGCC		OtherRNA	ShortStack
bdi-b1.0r1-14575	Brachypodium distachyon (Stiff brome) 1.0	1:60448184-60448702	-	2,422	6.92	GUGUAAUGGUGCAUUCAUAUAUUUCUCUGAUGCCC		OtherRNA	ShortStack
bdi-b1.0r1-14593	Brachypodium distachyon (Stiff brome) 1.0	1:60506801-60506960	-	1,164	3.33	GUCAAGAUGGCCGAG		OtherRNA	ShortStack
bdi-b1.0r1-14599	Brachypodium distachyon (Stiff brome) 1.0	1:60546104-60546433	-	1,497	4.28	UCGUGGGAUCCGGGC		OtherRNA	ShortStack