het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Sorghum bicolor (Sorghum) genome build 3.0 (sbi-b3.0)

Version v3.0 of Sorghum bicolor cv. BTx623 from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
sbi-b3.0r1-60Sorghum bicolor (Sorghum) 3.0Chr01:1019759-1019876-2,12315.78AGCUAGCAACCUCUGAGCGCUCsiRNA22ShortStack
sbi-b3.0r1-83Sorghum bicolor (Sorghum) 3.0Chr01:1345449-1345514+1811.35GUUCCAUAGUAGGUGAAUCACUsiRNA22ShortStack
sbi-b3.0r1-166Sorghum bicolor (Sorghum) 3.0Chr01:2633333-2633372-9497.05AGUUGGGUGCAUCCAAACAGGCsiRNA22ShortStack
sbi-b3.0r1-267Sorghum bicolor (Sorghum) 3.0Chr01:4268900-4270820.73,370545.32UGGAACUGCUUUGGGCGUGUUsiRNA22ShortStack
sbi-b3.0r1-517Sorghum bicolor (Sorghum) 3.0Chr01:7885409-7885562-5,56641.37GUCUGGGUGGUGUAGUUGGUUAsiRNA22ShortStack
sbi-b3.0r1-1037Sorghum bicolor (Sorghum) 3.0Chr01:15263108-15263248+1801.34UUUUUGUUGUGAAAAGUUUUCAsiRNA22ShortStack
sbi-b3.0r1-1139Sorghum bicolor (Sorghum) 3.0Chr01:17598741-17599017+3,89228.93AGCCUGUGAUGAAAUGACGCCUsiRNA22ShortStack
sbi-b3.0r1-2833Sorghum bicolor (Sorghum) 3.0Chr01:67951883-67951962-3842.85UUUUAAUGGGCAUGGUGUCUUCsiRNA22ShortStack
sbi-b3.0r1-3596Sorghum bicolor (Sorghum) 3.0Chr01:79178840-79178896+2,35617.51AAGAGUAGCGUUGAUACACCGUsiRNA22ShortStack
sbi-b3.0r1-3601Sorghum bicolor (Sorghum) 3.0Chr01:79261477-79261579+3392.52GAUUUCUCCAAAAUAGGACUCCsiRNA22ShortStack
sbi-b3.0r1-4504Sorghum bicolor (Sorghum) 3.0Chr02:13908725-13910241.2,32317.27UUCCAUGGGCUGAGUACUGCUAsiRNA22ShortStack
sbi-b3.0r1-4745Sorghum bicolor (Sorghum) 3.0Chr02:19902123-19902169+4353.23CUCCUCGACAUCUAGAAUACGCsiRNA22ShortStack
sbi-b3.0r1-4825Sorghum bicolor (Sorghum) 3.0Chr02:22653832-22653865-2,82921.03ACCGGAAGCUGUUGCUGCAUCAsiRNA22ShortStack
sbi-b3.0r1-4859Sorghum bicolor (Sorghum) 3.0Chr02:23645590-23645712+1551.15UAGAGAGAGAUAUCUAGAGAUsiRNA22ShortStack
sbi-b3.0r1-4872Sorghum bicolor (Sorghum) 3.0Chr02:24369429-24369470-3452.56AUGGCCACCAAAGGUGGGCGGCsiRNA22ShortStack
sbi-b3.0r1-4951Sorghum bicolor (Sorghum) 3.0Chr02:30987598-30987757+1991.48UACGCAAGCGGAACAUGGACGsiRNA22ShortStack
sbi-b3.0r1-4992Sorghum bicolor (Sorghum) 3.0Chr02:37669405-37669437.1,43410.66AGCCAAGCAAAGAAGGGAGUGGsiRNA22ShortStack
sbi-b3.0r1-5790Sorghum bicolor (Sorghum) 3.0Chr02:62607692-62607738-2091.55UCUAUAAACUUAGUCAAAGCUAsiRNA22ShortStack
sbi-b3.0r1-6982Sorghum bicolor (Sorghum) 3.0Chr03:1785060-1785142.4383.26GAGAAAGUUAAUCGGCUUAACUsiRNA22ShortStack
sbi-b3.0r1-7287Sorghum bicolor (Sorghum) 3.0Chr03:6306670-6306757-8686.45AUAUUUUUCUACAAACUUGGUUmiR437siRNA22ShortStack
sbi-MIR437n-m1Sorghum bicolor (Sorghum) 3.0Chr03:6306713-6306894-8086.01AUAUUUUUCUACAAACUUGGUUmiR437siRNA22miRBase21-BestBlastHit
sbi-b3.0r1-7902Sorghum bicolor (Sorghum) 3.0Chr03:16956104-16956235.7825.81GACAAGGUCAAGGAGAAGGCCsiRNA22ShortStack
sbi-b3.0r1-8017Sorghum bicolor (Sorghum) 3.0Chr03:21962224-21962276-2601.93UUGCCCAGUGAAAGAGUCAACGGCsiRNA22ShortStack
sbi-b3.0r1-8046Sorghum bicolor (Sorghum) 3.0Chr03:26456095-26456177+1,1238.35AUGGUGGUGGUUGGUUGGUGGAsiRNA22ShortStack
sbi-b3.0r1-8079Sorghum bicolor (Sorghum) 3.0Chr03:29011509-29011534+1801.34UGACUACUACCAAGAGGUCGGCsiRNA22ShortStack
sbi-b3.0r1-8144Sorghum bicolor (Sorghum) 3.0Chr03:36678981-36679084+2732.03AAAAGUGUUGGUGAGUGGAGUUsiRNA22ShortStack
sbi-b3.0r1-8358Sorghum bicolor (Sorghum) 3.0Chr03:50294128-50294272+2872.13AUAAGCUCGGUCAAACUUAAGGsiRNA22ShortStack
sbi-b3.0r1-9221Sorghum bicolor (Sorghum) 3.0Chr03:64085717-64085804-17,218127.97UGAAGCUGCCAGCAUGAUCUGAmiR167siRNA22ShortStack
sbi-b3.0r1-10077Sorghum bicolor (Sorghum) 3.0Chr04:2425523-2425678.640.48CCCCAUGUUGAGAUUGUAACsiRNA22ShortStack
sbi-b3.0r1-10219Sorghum bicolor (Sorghum) 3.0Chr04:4467791-4467818-89,072662.03UGAAGCUGCCAGCAUGAUCUGAmiR167siRNA22ShortStack
sbi-b3.0r1-10647Sorghum bicolor (Sorghum) 3.0Chr04:10888683-10890265.6835.08AGUGGGAGUAUGACUGAUCGGUsiRNA22ShortStack
sbi-b3.0r1-10713Sorghum bicolor (Sorghum) 3.0Chr04:12478364-12478647+3,09923.03AGGGGACAACGCAUCCGCCGGCsiRNA22ShortStack
sbi-b3.0r1-10915Sorghum bicolor (Sorghum) 3.0Chr04:20060403-20060464+3702.75AUCAAUAGUGGGGCAUCUUGGAsiRNA22ShortStack
sbi-b3.0r1-10951Sorghum bicolor (Sorghum) 3.0Chr04:22994162-22994200+3592.67UACGCAAGCGGAACAUGGACGsiRNA22ShortStack
sbi-b3.0r1-10955Sorghum bicolor (Sorghum) 3.0Chr04:23562256-23562392+1,36410.14GCAAGCGGAACAUGGACGACUCsiRNA22ShortStack
sbi-b3.0r1-11019Sorghum bicolor (Sorghum) 3.0Chr04:37558619-37558735+2071.54CGAGGGUUUGGGAUUUUUGGGUsiRNA22ShortStack
sbi-b3.0r1-11402Sorghum bicolor (Sorghum) 3.0Chr04:52249968-52250421.6144.56GGGAGGACAAGUGGAAAGCCAsiRNA22ShortStack
sbi-b3.0r1-11403Sorghum bicolor (Sorghum) 3.0Chr04:52250536-52250578.4923.66UAGAGAAGGCUACGCUAGAGCUsiRNA22ShortStack
sbi-b3.0r1-11546Sorghum bicolor (Sorghum) 3.0Chr04:54167153-54167261-5684.22AUACCCCGAUCCUAAUCCGGAUsiRNA22ShortStack
sbi-b3.0r1-11800Sorghum bicolor (Sorghum) 3.0Chr04:57160629-57160652+4273.17AUCCUUAACCUGUUGAGUGAAGsiRNA22ShortStack
sbi-b3.0r1-11834Sorghum bicolor (Sorghum) 3.0Chr04:57711695-57711800+3762.80AGCGCGGGGAGGAAGAGGAAGAsiRNA22ShortStack
sbi-b3.0r1-11849Sorghum bicolor (Sorghum) 3.0Chr04:57979082-57979299.440.33CUGAUUGGGCUACACUAGUGAAsiRNA22ShortStack
sbi-b3.0r1-11941Sorghum bicolor (Sorghum) 3.0Chr04:59254232-59254362+3132.33CCAGCGUGGAUCCCUGAUCGCUsiRNA22ShortStack
sbi-MIR437o-m1Sorghum bicolor (Sorghum) 3.0Chr04:66944221-66944395.50.04AUAACUUUGCAAGGUUUUUAGAmiR437siRNA22miRBase21-BestBlastHit
sbi-b3.0r1-12482Sorghum bicolor (Sorghum) 3.0Chr04:67246671-67246843+2762.05UUCGGUACUGUAGCACUUUUUUsiRNA22ShortStack
sbi-b3.0r1-12693Sorghum bicolor (Sorghum) 3.0Chr05:2049605-2049684+1,2959.63GUCUGGGUGGUGUAGUUGGUUAsiRNA22ShortStack
sbi-b3.0r1-13307Sorghum bicolor (Sorghum) 3.0Chr05:12552060-12552646.1461.09AUGGACUGCUACUAGAGCACAsiRNA22ShortStack
sbi-b3.0r1-13308Sorghum bicolor (Sorghum) 3.0Chr05:12554847-12555527.8196.09ACAUACACCGCAGUUUGGAUGAsiRNA22ShortStack
sbi-b3.0r1-13329Sorghum bicolor (Sorghum) 3.0Chr05:12915000-12915216.2211.64UAAAUCAUUGCAAAGCUCAGCsiRNA22ShortStack
sbi-b3.0r1-13330Sorghum bicolor (Sorghum) 3.0Chr05:12915455-12915719.5914.39AACUGUUCUAGGUCAGUGAGAAsiRNA22ShortStack
sbi-b3.0r1-13578Sorghum bicolor (Sorghum) 3.0Chr05:34529794-34531645.2,03715.14UGGAAGAGGCCAUUUGUGGAACsiRNA22ShortStack
sbi-b3.0r1-13580Sorghum bicolor (Sorghum) 3.0Chr05:34537645-34537722.860.64UAAGAUUUCAAAGGGGUAAGAUsiRNA22ShortStack
sbi-b3.0r1-13681Sorghum bicolor (Sorghum) 3.0Chr05:43465408-43465712-2742.04UUGGAACACAGAGAUAGUGGCsiRNA22ShortStack
sbi-b3.0r1-13814Sorghum bicolor (Sorghum) 3.0Chr05:52558148-52558254+2411.79AGAGACACCAGUUCUAGAGAGAsiRNA22ShortStack
sbi-b3.0r1-13896Sorghum bicolor (Sorghum) 3.0Chr05:55925368-55925391+6945.16UCGUUCCCCGGCAACGGCGCCAmiR8175siRNA22ShortStack
sbi-b3.0r1-13944Sorghum bicolor (Sorghum) 3.0Chr05:57489329-57489606.6474.81AGGUUAUCUUGUAUGCAAGGGAsiRNA22ShortStack
sbi-b3.0r1-14141Sorghum bicolor (Sorghum) 3.0Chr05:61636139-61636501.4733.52CUAGAGCUAGAGAAGAAGCGGGsiRNA22ShortStack
sbi-b3.0r1-15028Sorghum bicolor (Sorghum) 3.0Chr06:7283658-7283906+2,24016.65UGGUUGGUGGAAAAGUGUUGGUsiRNA22ShortStack
sbi-b3.0r1-15208Sorghum bicolor (Sorghum) 3.0Chr06:26066146-26066260-7265.40UGACAGAAGAAUGUAGUGCGACsiRNA22ShortStack
sbi-b3.0r1-15210Sorghum bicolor (Sorghum) 3.0Chr06:26793730-26793772-2481.84AGAGAAGGCUACGCUAGAGCUsiRNA22ShortStack
sbi-b3.0r1-15344Sorghum bicolor (Sorghum) 3.0Chr06:37623900-37624112.1861.38AUUGUUCUGCAGAUGAGGUCUsiRNA22ShortStack
sbi-b3.0r1-16012Sorghum bicolor (Sorghum) 3.0Chr06:50015285-50015307+2361.75UGGGGAAGCAAUUCGUCGAUCUsiRNA22ShortStack
sbi-b3.0r1-17385Sorghum bicolor (Sorghum) 3.0Chr07:9245229-9245413.270.20AAUAAUAAACAUGUAGAUAUUUGUGAUAUsiRNA22ShortStack
sbi-b3.0r1-17386Sorghum bicolor (Sorghum) 3.0Chr07:9250877-9253389+3,98229.60CGGUGUCGAGGUUGGAGAAGGCsiRNA22ShortStack
sbi-b3.0r1-17387Sorghum bicolor (Sorghum) 3.0Chr07:9254026-9256210+4,21731.34AUGAUCGCAGUCGCAAGAUGGsiRNA22ShortStack
sbi-b3.0r1-17575Sorghum bicolor (Sorghum) 3.0Chr07:17291815-17291917+7115.29UCCUCGACAUCUAGAAUACGCAsiRNA22ShortStack
sbi-b3.0r1-17727Sorghum bicolor (Sorghum) 3.0Chr07:38186214-38186352.490.36AUUUGUGGAACAAAAGGUGGAAsiRNA22ShortStack
sbi-b3.0r1-17728Sorghum bicolor (Sorghum) 3.0Chr07:38186657-38189793.9,03267.13UAAUACGUAUUAUGAUCUAGGACAsiRNA22ShortStack
sbi-b3.0r1-17729Sorghum bicolor (Sorghum) 3.0Chr07:38190364-38190635+2882.14ACAAGAAUAUGAAGAGUUGCUsiRNA22ShortStack
sbi-b3.0r1-17730Sorghum bicolor (Sorghum) 3.0Chr07:38191107-38192119+4,97536.98AGUUUUGAAGUUUAGCUUCGGGsiRNA22ShortStack
sbi-b3.0r1-17731Sorghum bicolor (Sorghum) 3.0Chr07:38192250-38193217.2,82420.99AUCACGAUCUCCAUCUGGAAGUsiRNA22ShortStack
sbi-b3.0r1-17801Sorghum bicolor (Sorghum) 3.0Chr07:43901891-43901912+2321.72GAGGAGGUCUGUGGAUGAUGGUsiRNA22ShortStack
sbi-b3.0r1-17882Sorghum bicolor (Sorghum) 3.0Chr07:51544039-51544151.9457.02UGACAGAAGAAUGUAGUGCGACsiRNA22ShortStack
sbi-b3.0r1-18624Sorghum bicolor (Sorghum) 3.0Chr07:64988969-64988996-1,1808.77AUCGGAUGUCUCCGAAGAGACAsiRNA22ShortStack
sbi-b3.0r1-19261Sorghum bicolor (Sorghum) 3.0Chr08:11441279-11441598-3502.60UCUGUUGGGACCAUGCACUGUGsiRNA22ShortStack
sbi-b3.0r1-19720Sorghum bicolor (Sorghum) 3.0Chr08:51456898-51457156.2,39417.79AACAUGACCCACACUCCUUGGGsiRNA22ShortStack
sbi-b3.0r1-20411Sorghum bicolor (Sorghum) 3.0Chr09:1187822-1187971.1981.47GCUGCAGCGGCAACUGCGGGsiRNA22ShortStack
sbi-b3.0r1-20592Sorghum bicolor (Sorghum) 3.0Chr09:3446237-3446505.6,92851.49UGAAAGGCAGUUAAUAGAAAAUsiRNA22ShortStack
sbi-b3.0r1-20593Sorghum bicolor (Sorghum) 3.0Chr09:3446608-3446793.8,52863.38ACUGCAGUCGGAUGAGCACUUsiRNA22ShortStack
sbi-b3.0r1-20594Sorghum bicolor (Sorghum) 3.0Chr09:3447000-3447213.21,643160.86AGUGCCAGUAGACUUCGUGGUAsiRNA22ShortStack
sbi-b3.0r1-20595Sorghum bicolor (Sorghum) 3.0Chr09:3447340-3447543.1,39210.35GGAGGAAGGAGAUUCAGAAGAUsiRNA22ShortStack
sbi-b3.0r1-20596Sorghum bicolor (Sorghum) 3.0Chr09:3447782-3447827.1,83513.64UAAAAGCCAAGCAAAGAAGGGsiRNA22ShortStack
sbi-b3.0r1-20597Sorghum bicolor (Sorghum) 3.0Chr09:3447914-3448459.22,078164.10AGAGAGGUCGGUAGUCUCUGAGsiRNA22ShortStack
sbi-b3.0r1-20598Sorghum bicolor (Sorghum) 3.0Chr09:3448538-3448713+7,92758.92UUCGGAUGUUCAAAUAGGAUAUsiRNA22ShortStack
sbi-b3.0r1-20599Sorghum bicolor (Sorghum) 3.0Chr09:3448805-3449629+42,256314.07UGCAGGACGAUACUCUGACGCCsiRNA22ShortStack
sbi-b3.0r1-20600Sorghum bicolor (Sorghum) 3.0Chr09:3450000-3451363.13,816102.69AGAUUGUGUAGAUAAGUGUGCUsiRNA22ShortStack
sbi-b3.0r1-20601Sorghum bicolor (Sorghum) 3.0Chr09:3451711-3451979+2,77420.62AUGGAGCUUAGUACCUGUACUsiRNA22ShortStack
sbi-b3.0r1-20602Sorghum bicolor (Sorghum) 3.0Chr09:3452075-3453266+28,708213.37UGCCAAGUGUUAAUCUCUAGAAsiRNA22ShortStack
sbi-b3.0r1-20603Sorghum bicolor (Sorghum) 3.0Chr09:3453354-3455010+123,025914.38AAGAGGAACCGAGAUGGUCGCUsiRNA22ShortStack
sbi-b3.0r1-20604Sorghum bicolor (Sorghum) 3.0Chr09:3455097-3455143.1,94214.43UAAAAGCCAAGCAAAGAAGGGsiRNA22ShortStack
sbi-b3.0r1-20605Sorghum bicolor (Sorghum) 3.0Chr09:3455381-3455584.1,45210.79GGAGGAAGGAGAUUCAGAAGAUsiRNA22ShortStack
sbi-b3.0r1-20606Sorghum bicolor (Sorghum) 3.0Chr09:3456197-3456315.5,06237.62ACUGCAGUCGGAUGAGCACUUsiRNA22ShortStack
sbi-b3.0r1-20607Sorghum bicolor (Sorghum) 3.0Chr09:3456421-3456525+6885.11UUAGUAGCAACAUGCAGUGCAsiRNA22ShortStack
sbi-b3.0r1-20608Sorghum bicolor (Sorghum) 3.0Chr09:3456604-3456778+1,3299.88UUAAUGAAAGUUUCUUGGAAGUsiRNA22ShortStack
sbi-b3.0r1-21006Sorghum bicolor (Sorghum) 3.0Chr09:11642401-11642665+2171.61UAGGCUCAAAAGAUUCGUCUUUsiRNA22ShortStack
sbi-b3.0r1-21304Sorghum bicolor (Sorghum) 3.0Chr09:41890018-41890073-1,73112.87AAAGAUUGUGUAGAUAAGUGUGsiRNA22ShortStack
sbi-b3.0r1-21470Sorghum bicolor (Sorghum) 3.0Chr09:46181891-46182107+1681.25UCGAAACACGCAGGAGAGCUGCsiRNA22ShortStack
sbi-b3.0r1-21582Sorghum bicolor (Sorghum) 3.0Chr09:48267851-48267874.230.17AUCUUAGACUAGCAUCUUAGAsiRNA22ShortStack
sbi-b3.0r1-21586Sorghum bicolor (Sorghum) 3.0Chr09:48279301-48279568.4803.57ACGGAGACUCCUGGCACGUCGCsiRNA22ShortStack
sbi-b3.0r1-22665Sorghum bicolor (Sorghum) 3.0Chr10:3332569-3332594+4113.06UAUGAACUAAUUCGAACUGUGUsiRNA22ShortStack
sbi-b3.0r1-23495Sorghum bicolor (Sorghum) 3.0Chr10:35692392-35692421.3162.35AUGGUCGCACUACAUUCUUCUGsiRNA22ShortStack
sbi-b3.0r1-24430Sorghum bicolor (Sorghum) 3.0Chr10:58832475-58832571+2,02015.01AGCACGUGCGGAGGCUCGUGGCsiRNA22ShortStack