het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Picea abies (Norway Spruce) genome build 1.0c (pab-b1.0c)

Version 1.0 Picea abies assembly collapsed for STAR

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
pab-b1.0cr1-16047Picea abies (Norway Spruce) 1.0cCombined_06:254997842-254997981.4551.04CUACUGCAGAAAACACGCCCAGGsiRNA23ShortStack
pab-b1.0cr1-16768Picea abies (Norway Spruce) 1.0cCombined_08:386042895-386042954+4,3129.86GGGGGAGGUAGAGGUUGCUAACUsiRNA23ShortStack
pab-b1.0cr1-16791Picea abies (Norway Spruce) 1.0cCombined_08:405143339-405143391-1,4063.22AUCGAAACCUGGCUCUGAUACCAsiRNA23ShortStack
pab-b1.0cr1-17453Picea abies (Norway Spruce) 1.0cCombined_10:42805150-42805227+7951.82UUCGCAGAAGAGUUGACACUAUCsiRNA23ShortStack
pab-b1.0cr1-323Picea abies (Norway Spruce) 1.0cMA_10230032:2275-2632+2,3285.32AGAUUAUUGUUGGCUUUUAUGGCsiRNA23ShortStack
pab-b1.0cr1-14629Picea abies (Norway Spruce) 1.0cMA_10433524:1441-1915-3880.89UCCGGAGGCGUUCUUUGCUGAUCsiRNA23ShortStack
pab-b1.0cr1-4464Picea abies (Norway Spruce) 1.0cMA_10436618:3613-3865+4120.94CAGUCUGACAUUUCCAAAUGAAGsiRNA23ShortStack
pab-b1.0cr1-13751Picea abies (Norway Spruce) 1.0cMA_127715:16603-17776+44,924102.74GAGUUCUCGGCCGUCCAGUUGGAsiRNA23ShortStack
pab-MIR3701dPicea abies (Norway Spruce) 1.0cMA_173634:8141-8322-10.00UUCUUCUCUUAAACAAUGCCCACmiR3701siRNA23miRBase22
pab-b1.0cr1-7114Picea abies (Norway Spruce) 1.0cMA_18236:35291-35328+2240.51AAACUCUGAAUACUAGAUUGCCAsiRNA23ShortStack
pab-b1.0cr1-14168Picea abies (Norway Spruce) 1.0cMA_209072:3658-4064-13,68731.30AUUCCGCCGGAAUCUUUCGAAUCsiRNA23ShortStack
pab-b1.0cr1-7955Picea abies (Norway Spruce) 1.0cMA_23094:12309-13793.147,418337.13AAAACCGGAAUAAUUGUUGACCUsiRNA23ShortStack
pab-b1.0cr1-8078Picea abies (Norway Spruce) 1.0cMA_248802:6869-7693+4891.12UCCACUGAUUGUCGUAUGUGCAGsiRNA23ShortStack
pab-b1.0cr1-9170Picea abies (Norway Spruce) 1.0cMA_41068:4165-4600+14,51633.20CCGGAAUGGUCAGUUGAACAGCCsiRNA23ShortStack
pab-b1.0cr1-9486Picea abies (Norway Spruce) 1.0cMA_45931:16356-16651+1,2842.94AGAAGAAGAGAUCAGAAGCGCUCsiRNA23ShortStack
pab-b1.0cr1-13298Picea abies (Norway Spruce) 1.0cMA_4667576:203-1740+114,647262.18UCUUAGAUUUCCAAACUCACCCUsiRNA23ShortStack
pab-b1.0cr1-13113Picea abies (Norway Spruce) 1.0cMA_85919:6199-6340-2,0854.77AGAAGGAUUGUAGAGAGAACAACsiRNA23ShortStack
pab-b1.0cr1-13037Picea abies (Norway Spruce) 1.0cMA_9967:20048-20510+4401.01AUCUCUAACUGAUUUUUUGGCAGsiRNA23ShortStack