| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| ptc-b3.0r1-581 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:25605916-25605945 | - | 1,896 | 17.84 | GUCUGGGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| ptc-b3.0r1-910 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:39819492-39819515 | + | 209 | 1.97 | CGAAUGAACAAGGCAAGACCAGC | | siRNA23 | ShortStack |
| ptc-b3.0r1-2335 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:582822-583062 | - | 242 | 2.28 | UCAGGAUACUUGAUGAAGUUUGC | | siRNA23 | ShortStack |
| ptc-b3.0r1-2380 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:2231053-2231121 | + | 492 | 4.63 | AAAAGCGGGGGCAGCAACUUUCU | | siRNA23 | ShortStack |
| ptc-b3.0r1-2894 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:119540-119668 | + | 31,228 | 293.82 | AGUAGGAUUUUCGGAAGGUUAUC | | siRNA23 | ShortStack |
| ptc-MIR472a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:119565-119645 | + | 31,074 | 292.37 | AGUAGGAUUUUCGGAAGGUUAUC | | siRNA23 | miRBase21-BestBlastHit |
| ptc-b3.0r1-3239 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:10725018-10725322 | - | 360,687 | 3,393.66 | UACCUGGUUGAUCCUGCCAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-3248 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:10735553-10735798 | - | 439,654 | 4,136.65 | UACCUGGUUGAUCCUGCCAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-3259 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:10754104-10754370 | - | 694 | 6.53 | AAGGCUUGACGGACAAGACUGCU | | siRNA23 | ShortStack |
| ptc-b3.0r1-3269 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:10783552-10783821 | + | 119,627 | 1,125.56 | UACCUGGUUGAUCCUGCCAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-3277 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:10792401-10792700 | + | 619,100 | 5,825.03 | UACCUGGUUGAUCCUGCCAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-3467 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:22020458-22020521 | - | 1,582 | 14.89 | AGGAUAUGUAAGAGAAAGACUGG | | siRNA23 | ShortStack |
| ptc-b3.0r1-3698 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:4671206-4671373 | - | 2,272 | 21.38 | UGCAGAUGAUGAUAGAACAGACA | | siRNA23 | ShortStack |
| ptc-b3.0r1-3767 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:6977702-6977794 | - | 42,911 | 403.74 | GUCUGGGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| ptc-b3.0r1-4887 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:9593548-9593625 | - | 124 | 1.17 | GCUCGGUAUUGUAACAUGGUGGC | | siRNA23 | ShortStack |
| ptc-b3.0r1-4967 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11823439-11823461 | - | 224 | 2.11 | AUCGAAACCAGGCUCUGAUACCA | | siRNA23 | ShortStack |
| ptc-b3.0r1-5268 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:4631467-4631527 | - | 5,903 | 55.54 | GUCUGGGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| ptc-b3.0r1-6141 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:1199437-1199549 | - | 173 | 1.63 | AGGCUGAAGCUGCCCGAACGGCU | | siRNA23 | ShortStack |
| ptc-MIR6440a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:2861001-2861110 | . | 2 | 0.02 | ACGAGUUUGACCGAGUUUGAUUGA | miR6440 | siRNA23 | miRBase21-BestBlastHit |
| ptc-b3.0r1-6187 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:3470301-3470324 | - | 246 | 2.32 | AUCGUAACCAGGCUCUGAUACCA | | siRNA23 | ShortStack |
| ptc-b3.0r1-6243 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:5931215-5931239 | - | 121 | 1.14 | AGGGUGACUCAACAAGACUCGGU | | siRNA23 | ShortStack |
| ptc-b3.0r1-7528 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:4406542-4406942 | + | 1,748 | 16.45 | UACCUGGUUGAUCCUGCUAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-7610 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:6557033-6557114 | - | 12,360 | 116.29 | GUCUGGGUGGUGUAGUUGGUUAU | | siRNA23 | ShortStack |
| ptc-b3.0r1-7890 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:16267557-16267863 | - | 313,730 | 2,951.85 | UACCUGGUUGAUCCUGCCAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-7904 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:16383553-16384183 | - | 5,032,350 | 47,348.74 | UACCUGGUUGAUCCUGCCAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-7922 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:16476103-16476208 | - | 9,955 | 93.67 | UACCUGGUUGAUCUUGCCAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-8089 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:3334712-3334840 | . | 240 | 2.26 | ACACAAGUAGUCUUAUGCUCAUC | | siRNA23 | ShortStack |
| ptc-b3.0r1-8104 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:4289105-4289133 | - | 224 | 2.11 | AGGACCAUCAAUGAACGAGCUAA | | siRNA23 | ShortStack |
| ptc-MIR482c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:11697042-11697212 | - | 651 | 6.13 | GCAGAUUUCCAGUAGUUCCUCCC | miR482 | siRNA23 | miRBase21-BestBlastHit |
| ptc-b3.0r1-8871 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:11697075-11697186 | - | 651 | 6.13 | GCAGAUUUCCAGUAGUUCCUCCC | miR482 | siRNA23 | ShortStack |
| ptc-MIR169p-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:16384470-16384633 | - | 1 | 0.01 | AGCCAAGGAUGACUUGCCGGCAU | miR169 | siRNA23 | miRBase21-BestBlastHit |
| ptc-b3.0r1-9570 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:9891637-9891665 | - | 191 | 1.80 | AGGAAGUGGAGACAAGUCCUCACA | | siRNA23 | ShortStack |
| ptc-b3.0r1-9958 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_22:1000003-1000277 | + | 81,677 | 768.49 | UACCUGGUUGAUCCUGCCAGUAG | | siRNA23 | ShortStack |
| ptc-b3.0r1-10221 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_45:110779-111376 | + | 189,168 | 1,779.86 | UACCUGGUUGAUCCUGCCAGUAG | | siRNA23 | ShortStack |
Data from Lunardon et al. (2020)