het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Beta vulgaris (Beet) genome build 1.2.2 (bvu-b1.2.2)

Version v1.2.2 of Beta vulgaris cv. KWS2320 from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bvu-b1.2.2r1-1552Beta vulgaris (Beet) 1.2.20217.scaffold00584:158622-158645+1,75213.11UUCAGAUCUAGGGUUUUUUUsiRNA20ShortStack
bvu-b1.2.2r1-2340Beta vulgaris (Beet) 1.2.20533.scaffold01098:2553-2641+6634.96AGUCCUCGUGUUGCACCCCUsiRNA20ShortStack
bvu-b1.2.2r1-2529Beta vulgaris (Beet) 1.2.20704.scaffold01293:12031-12051-4002.99GAAUAAUUUUUGGAAGUAGGAsiRNA20ShortStack
bvu-b1.2.2r1-7373Beta vulgaris (Beet) 1.2.22:8128774-8128940-2011.50AAAAACCGAUUAAAGAACUUsiRNA20ShortStack
bvu-b1.2.2r1-7583Beta vulgaris (Beet) 1.2.22:9149871-9149895+71,881537.93UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bvu-b1.2.2r1-8826Beta vulgaris (Beet) 1.2.22:27408071-27408248-21,280159.25UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack
bvu-b1.2.2r1-8925Beta vulgaris (Beet) 1.2.22:28920901-28920928+1931.44AAUAAUAUGCUCUGAGAUGUsiRNA20ShortStack
bvu-b1.2.2r1-9794Beta vulgaris (Beet) 1.2.23:23065-23194-2782.08UUAUCUGAUCUGAACUUUUUsiRNA20ShortStack
bvu-b1.2.2r1-10872Beta vulgaris (Beet) 1.2.23:5608046-5608101-2722.04AUCUGUUGUAACUGUUACACsiRNA20ShortStack
bvu-b1.2.2r1-11824Beta vulgaris (Beet) 1.2.23:16196094-16196119+3772.82UUCAGAUCUAGGGUUUAUCUsiRNA20ShortStack
bvu-b1.2.2r1-12736Beta vulgaris (Beet) 1.2.23:24851577-24851660-7885.90AGUCCUCGUGUUGCACCCCUsiRNA20ShortStack
bvu-b1.2.2r1-15156Beta vulgaris (Beet) 1.2.24:15007951-15008124-1,1448.56ACUGAACUGAACUGAACUUUsiRNA20ShortStack
bvu-b1.2.2r1-15649Beta vulgaris (Beet) 1.2.24:24061248-24061268+4043.02UUUGGAUUGAAGGGGGCUCCmiR159siRNA20ShortStack
bvu-b1.2.2r1-15724Beta vulgaris (Beet) 1.2.24:25324757-25324778+2912.18UUCCCAAGACCCCCCAUUUUsiRNA20ShortStack
bvu-b1.2.2r1-16103Beta vulgaris (Beet) 1.2.24:30515995-30516084+4493.36AACAACUUUUGCCGGUCUGCsiRNA20ShortStack
bvu-b1.2.2r1-16724Beta vulgaris (Beet) 1.2.25:2160602-2160669+3062.29UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack
bvu-b1.2.2r1-17752Beta vulgaris (Beet) 1.2.25:9709048-9709194-1561.17AAUGAGAAGUGUAGCGAGUGsiRNA20ShortStack
bvu-b1.2.2r1-18247Beta vulgaris (Beet) 1.2.25:17541672-17541785-1861.39ACUGAACUGAACUGAACUAUsiRNA20ShortStack
bvu-b1.2.2r1-18615Beta vulgaris (Beet) 1.2.25:28782194-28782263+1,60211.99UUGGACUGAAGGGAGCUCCAmiR319siRNA20ShortStack
bvu-b1.2.2r1-19156Beta vulgaris (Beet) 1.2.25:42322027-42322123+4853.63AAGCCAGAAUUCUGAUCCAUsiRNA20ShortStack
bvu-b1.2.2r1-21703Beta vulgaris (Beet) 1.2.26:5653786-5653808-9877.39UUCAGAUCUAGGGUUUACUCsiRNA20ShortStack
bvu-b1.2.2r1-22693Beta vulgaris (Beet) 1.2.26:12586533-12586715.2471.85UUUCGGUCAUGUAAUAGAUAsiRNA20ShortStack
bvu-b1.2.2r1-23687Beta vulgaris (Beet) 1.2.26:31110258-31110283-7,69057.55UUCAGAUCUAGGGUUUACUUsiRNA20ShortStack
bvu-b1.2.2r1-24239Beta vulgaris (Beet) 1.2.26:49606700-49606720+8176.11CACUGAUUAGUUCAAAGAGUsiRNA20ShortStack
bvu-b1.2.2r1-25102Beta vulgaris (Beet) 1.2.26:56893623-56893642-1711.28UGAAGCUGCAGCAUGAUCUGmiR167siRNA20ShortStack
bvu-b1.2.2r1-25331Beta vulgaris (Beet) 1.2.26:58554004-58554025+1841.38AAAACUGAUUCUUGAACCCCsiRNA20ShortStack
bvu-b1.2.2r1-27149Beta vulgaris (Beet) 1.2.27:21773034-21773069+1831.37UUAAAUUAAAAGUAGACGGCsiRNA20ShortStack
bvu-b1.2.2r1-27446Beta vulgaris (Beet) 1.2.27:30419306-30419421+520.39AUACUGUGACGAAUCAAACAsiRNA20ShortStack
bvu-b1.2.2r1-28344Beta vulgaris (Beet) 1.2.27:38754104-38754157-5023.76UUGGACGGGUCUAAUUGAUCsiRNA20ShortStack
bvu-b1.2.2r1-28855Beta vulgaris (Beet) 1.2.27:41270333-41270560.1,94214.53AUAAGACUGCCUUUGAAUGCsiRNA20ShortStack
bvu-b1.2.2r1-32374Beta vulgaris (Beet) 1.2.28:36994490-36994584-13,802103.29CCGACCUUAGCUCAGUUGGCmiR6478siRNA20ShortStack
bvu-b1.2.2r1-34923Beta vulgaris (Beet) 1.2.29:36993357-36993514+4033.02UUCUGAUCUGAAUUUUUUUUsiRNA20ShortStack
bvu-b1.2.2r1-36830Beta vulgaris (Beet) 1.2.2Bvchr1_un.sca002:4431105-4431189-2151.61UGUGAUGAUGACAAAAGACUsiRNA20ShortStack
bvu-b1.2.2r1-37232Beta vulgaris (Beet) 1.2.2Bvchr1_un.sca014:967963-968194.1,88214.08CAAUAAGAAUGCUAGUUCUUsiRNA20ShortStack
bvu-b1.2.2r1-38124Beta vulgaris (Beet) 1.2.2Bvchr3_un.sca001:777791-777810+5073.79UCGUGUACUGCUACUGCUGUsiRNA20ShortStack
bvu-b1.2.2r1-39754Beta vulgaris (Beet) 1.2.2Bvchr4_un.sca029:156567-156768+6134.59AGUCCUCGUGUUGCACCCCUsiRNA20ShortStack
bvu-b1.2.2r1-39814Beta vulgaris (Beet) 1.2.2Bvchr4_un.sca037:323701-323722-2251.68AUGGGUCGUGGAGGUAUCGGsiRNA20ShortStack
bvu-b1.2.2r1-40769Beta vulgaris (Beet) 1.2.2Bvchr6_un.sca017:144581-144600-1991.49UUGGAUUUUAUUUUGUUGAUsiRNA20ShortStack
bvu-b1.2.2r1-42185Beta vulgaris (Beet) 1.2.2contig104038:297-388+3002.25AGUCCUCGUGUUGCACCCCUsiRNA20ShortStack
bvu-b1.2.2r1-42205Beta vulgaris (Beet) 1.2.2contig105158:647-740+5494.11AGUCCUCGUGUUGCACCCCUsiRNA20ShortStack
bvu-b1.2.2r1-42226Beta vulgaris (Beet) 1.2.2contig106762:1-233+52,423392.31AGGGCUAUAGCUCAGUUAGGsiRNA20ShortStack
bvu-b1.2.2r1-42483Beta vulgaris (Beet) 1.2.2contig131945:330-450+4033.02UAAAUCCUAGCUCGGACGUCAsiRNA20ShortStack
bvu-b1.2.2r1-43027Beta vulgaris (Beet) 1.2.2contig93612:313-401+3372.52AGUCCUCGUGUUGCACCCCUsiRNA20ShortStack