het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Beta vulgaris (Beet) genome build 1.2.2 (bvu-b1.2.2)

Version v1.2.2 of Beta vulgaris cv. KWS2320 from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bvu-b1.2.2r1-511Beta vulgaris (Beet) 1.2.20087.scaffold00294:401703-401725-3582.68AGUUACUAAUUCAUGAUCUGAnearMIRNAShortStack
bvu-b1.2.2r1-1834Beta vulgaris (Beet) 1.2.20280.scaffold00735:139693-139716-1,53211.47UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
bvu-b1.2.2r1-3346Beta vulgaris (Beet) 1.2.21:3840852-3840928-1551.16AAGGCUGGAAAUUUGAUUUUCnearMIRNAShortStack
bvu-b1.2.2r1-3380Beta vulgaris (Beet) 1.2.21:4002686-4002791+2,27517.03GAGGUGCUGUGAAUGAUAUGUCACnearMIRNAShortStack
bvu-b1.2.2r1-4311Beta vulgaris (Beet) 1.2.21:9931619-9931685-2301.72UUUUAGUUGCAACGAUUUGAUnearMIRNAShortStack
bvu-b1.2.2r1-4387Beta vulgaris (Beet) 1.2.21:10839167-10839191+2161.62AGACGUGUAGACAGUUUUAGUGnearMIRNAShortStack
bvu-b1.2.2r1-5193Beta vulgaris (Beet) 1.2.21:28480318-28480369+1621.21AGACCGUCUCUGAAUUAGAAACAGnearMIRNAShortStack
bvu-b1.2.2r1-5208Beta vulgaris (Beet) 1.2.21:29182414-29182649+4243.17UUAUUUCCUAGUUCUAGUAGAAUUnearMIRNAShortStack
bvu-b1.2.2r1-6430Beta vulgaris (Beet) 1.2.22:3066594-3066690+3632.72UCUAAAAUAAGUCGAACACUUnearMIRNAShortStack
bvu-b1.2.2r1-6897Beta vulgaris (Beet) 1.2.22:5460988-5461283+1,0037.51AUGAUGUAUGAACUCAUGAGGUGUnearMIRNAShortStack
bvu-b1.2.2r1-8218Beta vulgaris (Beet) 1.2.22:14681905-14681934-1791.34AGGGCUGCACUUUUGAAGAAAAGCnearMIRNAShortStack
bvu-b1.2.2r1-8529Beta vulgaris (Beet) 1.2.22:19144391-19144473-6995.23AUGGGUGUGGAGAUGAGGUUGCAUnearMIRNAShortStack
bvu-b1.2.2r1-9073Beta vulgaris (Beet) 1.2.22:32535519-32535546-3702.77UUCCAUUUCGUGUAGACUACAnearMIRNAShortStack
bvu-b1.2.2r1-9272Beta vulgaris (Beet) 1.2.22:35554173-35554277+1761.32UUGUGUUGUGAAGUGGACUCUCAnearMIRNAShortStack
bvu-b1.2.2r1-9949Beta vulgaris (Beet) 1.2.23:798034-798201+1751.31AAGAGACUGUCUACUUUUAAAUUnearMIRNAShortStack
bvu-b1.2.2r1-10186Beta vulgaris (Beet) 1.2.23:1974415-1974473-790.59AGGUGUCACCGGUCGUAUAUGAGAnearMIRNAShortStack
bvu-b1.2.2r1-10314Beta vulgaris (Beet) 1.2.23:2806209-2806319+2081.56AAUGAUCUAUUAGGAGUGAGUAAUnearMIRNAShortStack
bvu-b1.2.2r1-10752Beta vulgaris (Beet) 1.2.23:5040374-5040449-3712.78GCGAUGAUGAUUAUGAUGACUnearMIRNAShortStack
bvu-b1.2.2r1-10891Beta vulgaris (Beet) 1.2.23:5729231-5729307-3032.27GCGAUGAUGAUUAUGAUGACUnearMIRNAShortStack
bvu-b1.2.2r1-11423Beta vulgaris (Beet) 1.2.23:10462892-10462925-166,8661,248.75UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
bvu-b1.2.2r1-11781Beta vulgaris (Beet) 1.2.23:15453730-15453752-1371.03AGUAGGCACUAUAUUAUGAGACAnearMIRNAShortStack
bvu-b1.2.2r1-11815Beta vulgaris (Beet) 1.2.23:16022572-16022632-2401.80AGUGUUUGGAUUAUUUGGGGCUGCnearMIRNAShortStack
bvu-b1.2.2r1-11821Beta vulgaris (Beet) 1.2.23:16168412-16168436-2822.11UUUUGUUGAUGGUCCUCUAACCnearMIRNAShortStack
bvu-b1.2.2r1-12606Beta vulgaris (Beet) 1.2.23:23827170-23827288-4533.39AAGAGACUGUCUACUUUUAAAUUnearMIRNAShortStack
bvu-b1.2.2r1-12688Beta vulgaris (Beet) 1.2.23:24360456-24360668+4713.53AGGAUCUUUGUAGUAUUGUCAACAnearMIRNAShortStack
bvu-b1.2.2r1-13489Beta vulgaris (Beet) 1.2.24:2984715-2984741+5323.98GGAGCGACCUGAGACCACAUGmiR398nearMIRNAShortStack
bvu-b1.2.2r1-13490Beta vulgaris (Beet) 1.2.24:2984819-2984905+7905.91UGUGUUCUCAGGUCGCCCCUGmiR398nearMIRNAShortStack
bvu-b1.2.2r1-13973Beta vulgaris (Beet) 1.2.24:5447788-5448052+6514.87GUGGACUAAUCUUUGCGAAAGUUUnearMIRNAShortStack
bvu-b1.2.2r1-14082Beta vulgaris (Beet) 1.2.24:5967931-5967987+2101.57GUCGAUCUAAGGCUGUAAUUUUnearMIRNAShortStack
bvu-b1.2.2r1-14348Beta vulgaris (Beet) 1.2.24:7483221-7483251-6,77750.72GGAAUGUUGGCUGGCUCGAGGmiR166nearMIRNAShortStack
bvu-b1.2.2r1-15299Beta vulgaris (Beet) 1.2.24:17106025-17106178-9026.75AUUUGGACUACAACUUGAAAGUGUnearMIRNAShortStack
bvu-b1.2.2r1-15448Beta vulgaris (Beet) 1.2.24:19682728-19682752+6394.78UUCAGAUCUAGGGUUUAAUUUnearMIRNAShortStack
bvu-b1.2.2r1-15705Beta vulgaris (Beet) 1.2.24:25021401-25021506-5153.85GUUGAUAUGGUGAUGACGUGUGCnearMIRNAShortStack
bvu-b1.2.2r1-15988Beta vulgaris (Beet) 1.2.24:29511340-29511368+2071.55UAAGAUUGAGGUGCUAUGAACAAUnearMIRNAShortStack
bvu-b1.2.2r1-16460Beta vulgaris (Beet) 1.2.25:394710-394902+7405.54AUAGGCUCCAAUAAGAAUGACAUGnearMIRNAShortStack
bvu-b1.2.2r1-16876Beta vulgaris (Beet) 1.2.25:3307711-3307830+7315.47GUUGCGGUUUCGGACAAGAACAGCnearMIRNAShortStack
bvu-b1.2.2r1-17940Beta vulgaris (Beet) 1.2.25:12736867-12736909+3402.54AUGCUGUAAACGAGUUAAUGACGUnearMIRNAShortStack
bvu-b1.2.2r1-18599Beta vulgaris (Beet) 1.2.25:28143151-28143336-3462.59AUCGAGACGAAUCUAACAAGACAnearMIRNAShortStack
bvu-b1.2.2r1-18675Beta vulgaris (Beet) 1.2.25:30822532-30822779-3832.87UUUAACGUGUUUGUGACUUGUnearMIRNAShortStack
bvu-b1.2.2r1-18722Beta vulgaris (Beet) 1.2.25:33654701-33654829+1671.25GUCAAACGUUCGGGCCAUGGGUGGnearMIRNAShortStack
bvu-b1.2.2r1-19737Beta vulgaris (Beet) 1.2.25:47495203-47495257-1801.35UGGAACCCUAUCGACUUUGUAnearMIRNAShortStack
bvu-b1.2.2r1-20160Beta vulgaris (Beet) 1.2.25:49717343-49717377-26,652199.45UGAAGCUGCCAGCAUGAUCUAmiR167nearMIRNAShortStack
bvu-b1.2.2r1-20291Beta vulgaris (Beet) 1.2.25:50418259-50418279+2171.62UUUGGAAGUCGGAUGGGAGUnearMIRNAShortStack
bvu-b1.2.2r1-21825Beta vulgaris (Beet) 1.2.26:6314575-6314713+8776.56GAGGUGCUGUGAACGAUAGGUCAUnearMIRNAShortStack
bvu-b1.2.2r1-21898Beta vulgaris (Beet) 1.2.26:6727301-6727327+3482.60AGUCAUGUGGGAUCUUGUUAGAUGnearMIRNAShortStack
bvu-b1.2.2r1-21943Beta vulgaris (Beet) 1.2.26:6966821-6966966-1,0537.88UGGACUAAUUUCUCGUAGGAGUUnearMIRNAShortStack
bvu-b1.2.2r1-22044Beta vulgaris (Beet) 1.2.26:7500379-7500403+4523.38UACCCCUUUGUUGCGUUUACAnearMIRNAShortStack
bvu-b1.2.2r1-23647Beta vulgaris (Beet) 1.2.26:29783500-29783604-4443.32UUGUCAAACUGAUCCUGCAUCnearMIRNAShortStack
bvu-b1.2.2r1-24639Beta vulgaris (Beet) 1.2.26:53783063-53783087+3952.96UACCCCUUUGUUGCGUUUACAnearMIRNAShortStack
bvu-b1.2.2r1-24769Beta vulgaris (Beet) 1.2.26:54526835-54526930+3112.33UUCCAUUUCGUGUAGACUACAnearMIRNAShortStack
bvu-b1.2.2r1-25594Beta vulgaris (Beet) 1.2.26:59861705-59861731-1,1668.73CUGAAGUGUUUGGGGGAACUUmiR395nearMIRNAShortStack
bvu-b1.2.2r1-28389Beta vulgaris (Beet) 1.2.27:39042699-39042723-2341.75UACCCCUUUGUUGCGUUUACAnearMIRNAShortStack
bvu-b1.2.2r1-29147Beta vulgaris (Beet) 1.2.27:42543339-42543368-4143.10CGCUAUCUAUCCUGAGUUUCAmiR390nearMIRNAShortStack
bvu-b1.2.2r1-29148Beta vulgaris (Beet) 1.2.27:42543468-42543494-1,50011.23AAGCUCAGGAGGGAUAGCGCCmiR390nearMIRNAShortStack
bvu-b1.2.2r1-30087Beta vulgaris (Beet) 1.2.28:4695511-4695605+6604.94UUUUCUGAUCUGAUCUUUUUnearMIRNAShortStack
bvu-b1.2.2r1-30542Beta vulgaris (Beet) 1.2.28:10230420-10230440+1541.15UCUUGAGCUUUGUGUUUUUCnearMIRNAShortStack
bvu-b1.2.2r1-30556Beta vulgaris (Beet) 1.2.28:10544069-10544135+1481.11AAAAUCCGUCUCUAAACUUAUAGAnearMIRNAShortStack
bvu-b1.2.2r1-31833Beta vulgaris (Beet) 1.2.28:33962621-33962643-6,63349.64UUGGACUGAAGGGAGCUCCUmiR319nearMIRNAShortStack
bvu-b1.2.2r1-33077Beta vulgaris (Beet) 1.2.29:3901929-3902110-1,0708.01UCGAAUGAAUUCAAGAACAUAnearMIRNAShortStack
bvu-b1.2.2r1-35179Beta vulgaris (Beet) 1.2.29:39222762-39222897-2,28817.12AAACUUAUUAGAUACCCUCGnearMIRNAShortStack
bvu-b1.2.2r1-36263Beta vulgaris (Beet) 1.2.2Bvchr1_un.sca002:880159-880364+5974.47AAUUUAUGAUCAUCUACUGUUAGUnearMIRNAShortStack
bvu-b1.2.2r1-37505Beta vulgaris (Beet) 1.2.2Bvchr2_un.sca002:117240-117336+2481.86AAUGCUGGGGAUAAGGAUCGAACCnearMIRNAShortStack
bvu-b1.2.2r1-42108Beta vulgaris (Beet) 1.2.2Bvchr9_un.sca011:191320-191355+1631.22AAUGAGAAUCUGUUGAACUAUGAGnearMIRNAShortStack
bvu-b1.2.2r1-42231Beta vulgaris (Beet) 1.2.2contig107592:1-146+3712.78AUAUAGGAAUUCCUGGACCCAnearMIRNAShortStack
bvu-b1.2.2r1-42802Beta vulgaris (Beet) 1.2.2contig161583:171-322-9517.12GCAUUGUUGGCUUGGAUUACGGnearMIRNAShortStack
bvu-b1.2.2r1-42821Beta vulgaris (Beet) 1.2.2contig163700:334-354-2962.22UGACGUUGCCUGACUUUGUGnearMIRNAShortStack
bvu-b1.2.2r1-43019Beta vulgaris (Beet) 1.2.2contig93477:880-914+2291.71GAACUGAACUGAACUUAUUAGAGUnearMIRNAShortStack