het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Chenopodium quinoa (Quinoa) genome build 1.0 (cqi-b1.0)

Version v1.0 of Chenopodium quinoa cv. Chilean quinoa PI 614886 from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
cqi-b1.0r1-34Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1000:12001770-12002319.1,1979.59UUCAAGAACUCCAUACACCCGsiRNA21ShortStack
cqi-b1.0r1-41Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1000:13641149-13641271-7215.78GGGCGAAUCUUCCUUGGCAUGsiRNA21ShortStack
cqi-b1.0r1-58Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1000:16269768-16269866+2141.71UCGGAACUACAUUUUCUGACCsiRNA21ShortStack
cqi-b1.0r1-323Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1001:7335918-7335989-2772.22CAAUCUCUCUCCACUACCACCsiRNA21ShortStack
cqi-b1.0r1-605Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1125:5221877-5222100.2492.00CUAGCAUCAACUUCACAGUCGAsiRNA21ShortStack
cqi-b1.0r1-908Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1229:1598581-1598665-1961.57UGCCAAAGGAGAGUUGCCCUGmiR399siRNA21ShortStack
cqi-b1.0r1-1130Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1280:7228815-7228883-17,575140.80UUGGACUGAAGGGAGCUCCCUmiR319siRNA21ShortStack
cqi-b1.0r1-1289Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:2320790-2321235.2,67521.43CUCCCUUUUUACUUGAAGUUGAsiRNA21ShortStack
cqi-b1.0r1-1515Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1480:915706-915758-2852.28UUGGACUGAAGGGAGCUCCCmiR319siRNA21ShortStack
cqi-b1.0r1-1551Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1480:2511227-2511296+1,1749.41UCGGACCAGGCUUCAUUCCCCmiR166siRNA21ShortStack
cqi-b1.0r1-1620Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1516:3178835-3178914.3122.50UACCAAAUAUCUCUAAGACUUsiRNA21ShortStack
cqi-b1.0r1-1688Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1529:2929611-2930152+2,14517.19UUUUGCCACACCACUUUACUCsiRNA21ShortStack
cqi-b1.0r1-1689Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1529:2943620-2944390+3,05324.46UAGACUAGCAACAUCAACAAGsiRNA21ShortStack
cqi-b1.0r1-2227Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1703:573165-574442+3,62629.05CAACUCUAACCUUGACACCGUGsiRNA21ShortStack
cqi-b1.0r1-2800Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1862:2416389-2416485+8136.51AGUAGAACAACAGACCCCGUGsiRNA21ShortStack
cqi-b1.0r1-3158Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1995:5343900-5343921+3252.60UUGACAGAAGAGAGUGAGCACmiR156siRNA21ShortStack
cqi-b1.0r1-3239Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2008:2618569-2618648+40,447324.04UCGGACCAGGCUUCAUUCCCCmiR166siRNA21ShortStack
cqi-b1.0r1-3394Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2081:2468686-2469552.7045.64CAGGCUGAGAUUAUAAAUUCCsiRNA21ShortStack
cqi-b1.0r1-3449Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:1498935-1499502.8,82670.71AAUUCCAUCGUACAAAAUGCACUCsiRNA21ShortStack
cqi-b1.0r1-3485Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:2962129-2962210.2051.64CUUCAGUCGGAAAACCUGCCUsiRNA21ShortStack
cqi-b1.0r1-3538Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:6029041-6029097-8747.00UCGGACCAGGCUUCAUUCCUCmiR166siRNA21ShortStack
cqi-b1.0r1-3592Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:9286680-9286827+1601.28GCCUAGAUCUUUCGAAUCACCsiRNA21ShortStack
cqi-b1.0r1-4444Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2493:2183488-2183508-3612.89AAGCUCAGGAGGGAUAGCGCCmiR390siRNA21ShortStack
cqi-b1.0r1-4568Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2587:570360-570381-1811.45CUGGAUUAUGACUGAACGCCAsiRNA21ShortStack
cqi-b1.0r1-4601Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2608:261728-261979.4403.53UUCGGAUGGCUCGUUCACAUCsiRNA21ShortStack
cqi-b1.0r1-4735Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2654:34593-34642+4333.47UCAUGAUCGAAUUUGGCCGUAsiRNA21ShortStack
cqi-b1.0r1-4808Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2702:1928939-1928997.660.53UUAUCCGAUCCGAAAAUUUCGsiRNA21ShortStack
cqi-b1.0r1-4816Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2715:537524-537605+3262.61UAUGUAAACCGAUCUUGGGCUsiRNA21ShortStack
cqi-b1.0r1-5018Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2716:8054847-8054946+3372.70UGAGAAUCUUGAUGAUGCUGCmiR172siRNA21ShortStack
cqi-b1.0r1-5040Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2716:9552199-9552221-3042.44AAGCUCAGGAGGGAUAGCGCCmiR390siRNA21ShortStack
cqi-b1.0r1-5115Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2751:6208718-6208785-2311.85UAAUCUGCAUCCUGAGGCUCsiRNA21ShortStack
cqi-b1.0r1-5220Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2773:3448483-3448812.9407.53CUGGCACACUCGGAGGAGCUCsiRNA21ShortStack
cqi-b1.0r1-5318Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2858:1154591-1154664-3412.73CAAUCUCUCUCCACUCCCACCsiRNA21ShortStack
cqi-b1.0r1-5436Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2876:3051165-3051248+1,65313.24UUAUCAGGGUUGUGAUUCUCCsiRNA21ShortStack
cqi-b1.0r1-6169Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3107:1784354-1784377+2572.06CUAUGUCGCUUCGAUUCGUUUsiRNA21ShortStack
cqi-b1.0r1-6176Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3107:1973587-1974348.18,820150.78CAUAACUUCUGAUAGAACCUsiRNA21ShortStack
cqi-b1.0r1-6215Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3163:587754-587938.2011.61UAAUGGACUACCAUAUGGACCsiRNA21ShortStack
cqi-b1.0r1-6216Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3163:588044-588140-1921.54UCUCCGUGUCAUUCGUAGACUsiRNA21ShortStack
cqi-b1.0r1-6217Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3163:588274-588725.1,55012.42UAAUGGACUACCAUAUGGACCsiRNA21ShortStack
cqi-b1.0r1-6456Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3333:948835-949273.158,0821,266.48ACACGAUAUCAUACGACACCGsiRNA21ShortStack
cqi-b1.0r1-6657Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3389:4704312-4704429-3342.68UAUACAACGGAUUGGGCAAUCsiRNA21ShortStack
cqi-b1.0r1-6912Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:3594488-3594736.4723.78UUCAAAACUUUGACAUUGCCUsiRNA21ShortStack
cqi-b1.0r1-6915Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:3595786-3595859.4493.60UUCUUCAGCCGGAAAACCUGCsiRNA21ShortStack
cqi-b1.0r1-6975Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:6405030-6405080-1,0318.26UCGGACCAGGCUUCAUUCCUCmiR166siRNA21ShortStack
cqi-b1.0r1-7536Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3670:1178383-1178771.47,505380.59UGACAUUAGAAACGAAAAUCUsiRNA21ShortStack
cqi-b1.0r1-7882Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3792:1820550-1820852+2,70121.64UUGUCAGGGUUGUGAUUCUCCsiRNA21ShortStack
cqi-b1.0r1-8574Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:646675-646774.9167.34UUUUCGUCAGAUCUAGGCUGAsiRNA21ShortStack
cqi-b1.0r1-9242Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4336:3044819-3045179.2892.32UUCGUGACAAUAUCCAGCCCUsiRNA21ShortStack
cqi-b1.0r1-9246Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4338:989145-989217-1851.48UCUGCCAAGGGAGACUUGCCCsiRNA21ShortStack
cqi-b1.0r1-9249Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4338:1009898-1009968-4353.49GUGCGAUUCUCCUUUGGCAUGmiR399siRNA21ShortStack