het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Chenopodium quinoa (Quinoa) genome build 1.0 (cqi-b1.0)

Version v1.0 of Chenopodium quinoa cv. Chilean quinoa PI 614886 from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
cqi-b1.0r1-286Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1001:4520530-4520674+7526.03CGACCAUGAAAACUCUAGGUnearMIRNAShortStack
cqi-b1.0r1-475Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1040:2395383-2395533-4313.45ACUAGAUCAAGACUUGUUUGGUUUnearMIRNAShortStack
cqi-b1.0r1-727Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1189:2517398-2517427-1281.03AAAUUAAGGACACACUAAAAAAUGnearMIRNAShortStack
cqi-b1.0r1-728Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1189:2622268-2622288-3712.97GCUCUCUAUGUUCUGUCACCmiR156nearMIRNAShortStack
cqi-b1.0r1-729Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1189:2672786-2672805-3853.08GCUCUCUAUGUUCUGUCACCmiR156nearMIRNAShortStack
cqi-b1.0r1-954Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1251:1286218-1286307+2882.31AGCAAAUUCGACUGUGAAAACUGUnearMIRNAShortStack
cqi-b1.0r1-1031Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1257:3968099-3968179-1891.51GGCGCAUGCAUUACACGUGUCGGCnearMIRNAShortStack
cqi-b1.0r1-1049Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1257:4937687-4937789+5844.68AUCCGGAUAUCCGAAAUUUUCGGAnearMIRNAShortStack
cqi-b1.0r1-1070Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1280:1911448-1911468-2752.20UGUGUUCUCAGGUCACCCCUGmiR398nearMIRNAShortStack
cqi-b1.0r1-1378Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1412:2097234-2097302+2141.71AUGUAGAACAAAGACAACGAAAGUnearMIRNAShortStack
cqi-b1.0r1-1463Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1447:5456221-5456273+3272.62AAUGAUGUAGACAAGAUUUAAUCUnearMIRNAShortStack
cqi-b1.0r1-1635Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1522:2631167-2631308-2461.97AGUUGCAUUGUAUUGGUUUUUACGnearMIRNAShortStack
cqi-b1.0r1-1799Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1566:1801015-1801047-150.12GUCAAAUCGUUGCAACUAACUAUUnearMIRNAShortStack
cqi-b1.0r1-1904Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1606:985361-985417-4833.87AGAAUCUAAUGAUCGUGUCGAUUUnearMIRNAShortStack
cqi-b1.0r1-2156Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1677:1288393-1288442+1140.91AUACUUAGGACACACCAGAAAAUGnearMIRNAShortStack
cqi-b1.0r1-2183Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1695:1184377-1184565+6,35350.90UUGGACUGAAGGGAGCUCCCUmiR319nearMIRNAShortStack
cqi-b1.0r1-2329Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1710:7935391-7935489-1,73513.90UCUCGGGAAUUAAACGAACUUnearMIRNAShortStack
cqi-b1.0r1-2359Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1727:559722-559742+1090.87GCUUACUCUCUGUCUGUCUCCnearMIRNAShortStack
cqi-b1.0r1-2425Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1749:475949-476029+1531.23AAGGGUUGUAAUUGCUUCUCACCUnearMIRNAShortStack
cqi-b1.0r1-2453Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1762:335493-335516+6,22249.85UCGGACCAGGCUUCAUUCCUCmiR166nearMIRNAShortStack
cqi-b1.0r1-2534Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1783:80337-80440+1461.17AUUUUCAAGACUGUUUUUAAUGCUnearMIRNAShortStack
cqi-b1.0r1-2636Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1817:1562681-1562724-1431.15UUGAGGUUCAGGAUUAUGUUUnearMIRNAShortStack
cqi-b1.0r1-2792Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1862:1717485-1717505-3833.07UUGAGCCGUGCCAAUAUCCCGmiR171nearMIRNAShortStack
cqi-b1.0r1-2908Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1971:711688-711838+12,26098.22UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
cqi-b1.0r1-3466Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:2200497-2200518+6014.82UGUGUUCUCAGGUCGCCCCUGmiR398nearMIRNAShortStack
cqi-b1.0r1-3504Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:4182582-4182688+2632.11AAUACAAUGUGUAAAACGCUGCCUnearMIRNAShortStack
cqi-b1.0r1-3902Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2244:2000707-2000807+4713.77CGGCUGCCAGAACUACUGGGCnearMIRNAShortStack
cqi-b1.0r1-3920Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2305:257936-258044-1521.22AAGGUAAAACGCUGUCUCGGACAGnearMIRNAShortStack
cqi-b1.0r1-3952Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2306:4784152-4784183-3672.94AUGUAUUGCCAAUUCUGCCCUUCUnearMIRNAShortStack
cqi-b1.0r1-4292Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2465:936-957+2682.15GCAGCAUCAUCGAGAUUCACAmiR172nearMIRNAShortStack
cqi-b1.0r1-4401Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2493:819201-819222-3122.50GCAGCAUCAUCGAGAUUCACAmiR172nearMIRNAShortStack
cqi-b1.0r1-5131Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2751:6898926-6898977-1,25410.05UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
cqi-b1.0r1-6882Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:2858149-2858174+5184.15UGUGUUCUCAGGUCGCCCCUGmiR398nearMIRNAShortStack
cqi-b1.0r1-7199Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3507:57867-57889+3092.48UUCCCAAGACCCCCCAUACCAAnearMIRNAShortStack
cqi-b1.0r1-7460Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3631:1953917-1953958-2512.01AAGAGACACGCCAGAAAAUGACACnearMIRNAShortStack
cqi-b1.0r1-7596Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3674:1060221-1060243-2802.24GCUUACUCUCUGUCUGUCUCCnearMIRNAShortStack
cqi-b1.0r1-7663Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3674:4150168-4150290+1,0118.10UCCGGUCCAAAUAACUCGCAACnearMIRNAShortStack
cqi-b1.0r1-8075Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3820:6899896-6899959+5,84546.83UGAAGCUGCCAGCAUGAUCUGmiR167nearMIRNAShortStack
cqi-b1.0r1-8412Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3973:653156-653183+3743.00AGAUUAUUUGUGAACGGAGGGAGUnearMIRNAShortStack
cqi-b1.0r1-8489Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4036:576699-576838+3,31526.56UAGCAAGAGGGACAUUAGCACUnearMIRNAShortStack
cqi-b1.0r1-8582Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:1038870-1038894+1871.50AUUCCUUAAAGAUUGUCUCAUUUGnearMIRNAShortStack
cqi-b1.0r1-8589Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:1686189-1686269-1,25610.06UACUUCGCAGGAGAGAUGAUGCCUnearMIRNAShortStack
cqi-b1.0r1-8627Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:7344442-7344479-2381.91AACCAAUGUAGGAAUCGAACCUAUnearMIRNAShortStack
cqi-b1.0r1-9248Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4338:995036-995056-1110.89UGCCAAAGGAGACUUGCCCUGmiR399nearMIRNAShortStack
cqi-b1.0r1-9406Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4480:1605431-1605614-2782.23AAUGGAUCUUGCUAACAAACGCCUnearMIRNAShortStack
cqi-b1.0r1-9494Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4480:7246120-7246165+1941.55CGCCAGAUCUAGGGUGAAACGCCUnearMIRNAShortStack