het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Cucumis sativus (Cucumber) genome build 2 (csa-b2)

Version v2 of Cucumis sativus cv. Chinese Long 9930 from The Cucurbit Genomics Database

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
csa-b2r1-703Cucumis sativus (Cucumber) 2Chr1:2377212-2377323-1,6282.50AAAUACUGACUAGAUCCAUGCAGsiRNA23ShortStack
csa-b2r1-5587Cucumis sativus (Cucumber) 2Chr1:15611597-15612672+12,89519.81UGAGCCAAGAAUGACUUGCCGGCmiR169siRNA23ShortStack
csa-MIR169d-1Cucumis sativus (Cucumber) 2Chr1:15612198-15612290+9,63114.80UGAGCCAAGAAUGACUUGCCGGCmiR169siRNA23Ling_et_al_2017
csa-MIR169e-1Cucumis sativus (Cucumber) 2Chr1:15612198-15612290+9,63114.80UGAGCCAAGAAUGACUUGCCGGCmiR169siRNA23Ling_et_al_2017
csa-b2r1-10710Cucumis sativus (Cucumber) 2Chr1:28616381-28616611.1,2411.91CAACGAUGUGUCUGGAUGAAAUUsiRNA23ShortStack
csa-b2r1-11642Cucumis sativus (Cucumber) 2Chr2:2256080-2256117-3450.53CUAUAGGUUGUACAUCUGUGUCUsiRNA23ShortStack
csa-b2r1-18997Cucumis sativus (Cucumber) 2Chr2:22343252-22343457.5610.86CUCUGUAUCGUUCCAAUUUUAUUsiRNA23ShortStack
csa-b2r1-19901Cucumis sativus (Cucumber) 2Chr3:1518314-1518480-3,5945.52AUUCCUUAACUAAUGAUCAAUAGsiRNA23ShortStack
csa-b2r1-23223Cucumis sativus (Cucumber) 2Chr3:11284264-11284297+2070.32UAGGUUGACACUCCCUUAGCGCCsiRNA23ShortStack
csa-b2r1-26020Cucumis sativus (Cucumber) 2Chr3:18865686-18865709-1030.16CACUGUAGAACAAUUUUGAAAAUsiRNA23ShortStack
csa-b2r1-30882Cucumis sativus (Cucumber) 2Chr3:32724291-32724440-1,7832.74UUGAGCUAUGCUCGCUUUGGCAUsiRNA23ShortStack
csa-b2r1-32335Cucumis sativus (Cucumber) 2Chr3:36691902-36691928-7631.17UUCCUUAACUUAAGUUCUUAAAGsiRNA23ShortStack
csa-b2r1-35823Cucumis sativus (Cucumber) 2Chr4:7010080-7010106.300.05CAAGAUAACGUGGAAUUAAUUUCsiRNA23ShortStack
csa-b2r1-38648Cucumis sativus (Cucumber) 2Chr4:14414144-14414174.2960.46AUCCAAAGUGAGAUCUGAAAAUUsiRNA23ShortStack
csa-b2r1-39074Cucumis sativus (Cucumber) 2Chr4:15524385-15526012+22,43734.47UCCUAGAAAUUCUUGUUCUGAUGsiRNA23ShortStack
csa-b2r1-42345Cucumis sativus (Cucumber) 2Chr5:1465489-1466159+4,2536.53CGAGAACCGGUGACUUAGAGCUUsiRNA23ShortStack
csa-b2r1-44176Cucumis sativus (Cucumber) 2Chr5:7006841-7006988-410,010629.89GGGCAGCCCCAUGUUGGGCAUGGsiRNA23ShortStack
csa-b2r1-48966Cucumis sativus (Cucumber) 2Chr5:19108989-19109291-44,51268.38UCGAAUGAAUUCAAGGACAUAUUsiRNA23ShortStack
csa-b2r1-53592Cucumis sativus (Cucumber) 2Chr6:4493844-4494121-1,3512.08GAUACUGAGAAUAUGGUUGGCAGsiRNA23ShortStack
csa-b2r1-57459Cucumis sativus (Cucumber) 2Chr6:14665429-14666498-7,06210.85AAGGGCCAAUGCAUUAGCCUACAsiRNA23ShortStack
csa-b2r1-58176Cucumis sativus (Cucumber) 2Chr6:16560611-16560758-6370.98AACCUUAACGUUCAUAUGUAGAAsiRNA23ShortStack
csa-b2r1-61582Cucumis sativus (Cucumber) 2Chr6:28136443-28136664-5,7288.80GUUGCUAACUUUCAUCGAGACAGsiRNA23ShortStack
csa-b2r1-61968Cucumis sativus (Cucumber) 2Chr7:566832-567913-41,12363.18AAAUAUUAAUCCAUGCUUCUCACsiRNA23ShortStack
csa-b2r1-63413Cucumis sativus (Cucumber) 2Chr7:4611344-4611394+2210.34UUAACACUAUGUUUUCGUUGUAGsiRNA23ShortStack
csa-b2r1-64471Cucumis sativus (Cucumber) 2Chr7:7377759-7377784-1940.30CAAUACUAAUGUUCUUAUUGCAGsiRNA23ShortStack
csa-b2r1-67948Cucumis sativus (Cucumber) 2Chr7:16632253-16632457+2,2553.46AUAUACUAACUUACUCUGUCCAGsiRNA23ShortStack
csa-b2r1-69612Cucumis sativus (Cucumber) 2Scaffold000353:1792-2626-15,34523.57UCGAGAUCGACUAUGAGAAAACAsiRNA23ShortStack