het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Cucumis sativus (Cucumber) genome build 2 (csa-b2)

Version v2 of Cucumis sativus cv. Chinese Long 9930 from The Cucurbit Genomics Database

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
csa-b2r1-834Cucumis sativus (Cucumber) 2Chr1:2731577-2731755+15,11823.23CCUUGAAGCUUAGUUGCGAUsiRNA20ShortStack
csa-b2r1-4544Cucumis sativus (Cucumber) 2Chr1:13072433-13072830+80,435123.57UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
csa-b2r1-11439Cucumis sativus (Cucumber) 2Chr2:1701654-1701897+30,77247.28UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
csa-b2r1-16875Cucumis sativus (Cucumber) 2Chr2:15243773-15243862-2,6994.15UCAUUCACGCAAAAAUGACAsiRNA20ShortStack
csa-b2r1-17751Cucumis sativus (Cucumber) 2Chr2:18701665-18701688+4340.67CAUCCUUAACUAUCAUAAAGsiRNA20ShortStack
csa-b2r1-20675Cucumis sativus (Cucumber) 2Chr3:3391336-3391461+6470.99UUCCACAGCUUUCUUAACUGsiRNA20ShortStack
csa-b2r1-22698Cucumis sativus (Cucumber) 2Chr3:9637055-9637170-13,61720.92GAUCAUGCGGCAGUUUCACCmiR167siRNA20ShortStack
csa-b2r1-24255Cucumis sativus (Cucumber) 2Chr3:14251995-14252021-1480.23UUGAGCUAUGCUCGCUUUUUsiRNA20ShortStack
csa-b2r1-24927Cucumis sativus (Cucumber) 2Chr3:16019678-16019782-2,4903.83CCUCCCUCAAAGGCUUCCAAmiR477siRNA20ShortStack
csa-b2r1-29909Cucumis sativus (Cucumber) 2Chr3:29331782-29331815-250.04CGGAUCUGGUUGUUAACACUsiRNA20ShortStack
csa-b2r1-39925Cucumis sativus (Cucumber) 2Chr4:17768540-17768581+2490.38AGCCACAAUAUGUUUAGGUAsiRNA20ShortStack
csa-b2r1-43390Cucumis sativus (Cucumber) 2Chr5:4662980-4663410+1,810,7782,781.88UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack
csa-b2r1-50603Cucumis sativus (Cucumber) 2Chr5:23952386-23952758+356,534547.74UUGGACUGAAGGGAGCUCCCmiR319siRNA20ShortStack
csa-b2r1-51765Cucumis sativus (Cucumber) 2Chr5:27406770-27406791-2830.44AUAAAAUAAAUAUAGUUAUUsiRNA20ShortStack
csa-b2r1-59420Cucumis sativus (Cucumber) 2Chr6:19981349-19981466-5,7208.79UAUACUAAUUCUCGUUCUCUsiRNA20ShortStack
csa-b2r1-65075Cucumis sativus (Cucumber) 2Chr7:8960711-8960731+2120.33CCUGUUCAAGUAAGGUCGUAsiRNA20ShortStack
csa-b2r1-65316Cucumis sativus (Cucumber) 2Chr7:9584104-9584394-1,069,1001,642.45GGUAGUUCGAUCGUGGAAUUsiRNA20ShortStack
csa-b2r1-65633Cucumis sativus (Cucumber) 2Chr7:10448300-10448620+980,5681,506.43ACCAGAAUUCUUGAACAGCGsiRNA20ShortStack