het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Citrus clementina (Clementine) genome build 1 (ccl-b1)

Version v1 of Citrus clementina cv. Clemenules from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ccl-b1r1-404Citrus clementina (Clementine) 1scaffold_1:5925561-5925891+3197.07AAGGACAACUAACUAUCAUGCCUsiRNA23ShortStack
ccl-b1r1-1881Citrus clementina (Clementine) 1scaffold_2:6928939-6928964+711.57UUUUAAUGAUUUCUCUCAUGCAGsiRNA23ShortStack
ccl-b1r1-1986Citrus clementina (Clementine) 1scaffold_2:8355839-8355869+58412.94UCCCAAUAUCCAGACAUUUACUCsiRNA23ShortStack
ccl-b1r1-2003Citrus clementina (Clementine) 1scaffold_2:8746307-8746426.1322.92AGGAACUAAACAAAUACUGACCUsiRNA23ShortStack
ccl-b1r1-2278Citrus clementina (Clementine) 1scaffold_2:12799324-12799429+1453.21AAGCCAGACUUCUGAACCCGAAAsiRNA23ShortStack
ccl-b1r1-2613Citrus clementina (Clementine) 1scaffold_2:22191513-22191536+1272.81UUAUGAUAAUAUGUUUGAUGUAGsiRNA23ShortStack
ccl-b1r1-3451Citrus clementina (Clementine) 1scaffold_3:1277441-1277479+791.75GAGAAUCAAGUUGGGACUAGAUUsiRNA23ShortStack
ccl-b1r1-4805Citrus clementina (Clementine) 1scaffold_3:34601151-34601184-4,33696.04AAGCAAUGACUAUUCAUGAUUCCsiRNA23ShortStack
ccl-b1r1-4833Citrus clementina (Clementine) 1scaffold_3:35209486-35209624-3728.24AGGAAUGUGACUCAGAAUAAGAGsiRNA23ShortStack
ccl-b1r1-5085Citrus clementina (Clementine) 1scaffold_3:40681651-40681700-2695.96UUCAUAUAACCGUCAUUAAAUGUsiRNA23ShortStack
ccl-b1r1-5589Citrus clementina (Clementine) 1scaffold_3:47447700-47447747+2,22349.24CUAUCCUCCCUAAUCUGUAAACUsiRNA23ShortStack
ccl-b1r1-5644Citrus clementina (Clementine) 1scaffold_3:48027137-48027245-952.10CUUACUUCUUAAAUACAUUGCAGsiRNA23ShortStack
ccl-b1r1-5787Citrus clementina (Clementine) 1scaffold_3:49987314-49987340-1583.50CUGUGCUAACUCUUGUCAAGUGCsiRNA23ShortStack
ccl-b1r1-7262Citrus clementina (Clementine) 1scaffold_4:25393328-25393530-48710.79UUCUUCUAAUUGUUUCUAUGUAGsiRNA23ShortStack
ccl-b1r1-7549Citrus clementina (Clementine) 1scaffold_5:8649911-8649969-4429.79AAUUCUAACAAAUUAUUCUGUAGsiRNA23ShortStack
ccl-b1r1-7796Citrus clementina (Clementine) 1scaffold_5:17010152-17010190+1743.85AAGAGAAAACAAUCGUUAGAGGCsiRNA23ShortStack
ccl-b1r1-7946Citrus clementina (Clementine) 1scaffold_5:21249699-21249748-972.15AGAGACAAUAAAAGAACUUGCCUsiRNA23ShortStack
ccl-b1r1-9442Citrus clementina (Clementine) 1scaffold_6:11829911-11829941-1763.90GUGCUACAUCUGUGAUUGGUAGsiRNA23ShortStack
ccl-b1r1-9989Citrus clementina (Clementine) 1scaffold_6:19675018-19675054+3237.15UACUCUGCAUCUAUUGGUCACAGsiRNA23ShortStack
ccl-b1r1-10167Citrus clementina (Clementine) 1scaffold_6:22587106-22587189+2655.87UGAACCGAACCAAACCGAAAUAUsiRNA23ShortStack
ccl-b1r1-10450Citrus clementina (Clementine) 1scaffold_7:2658686-2658710+1312.90CGAGAUCGUCCAAAAUUUAAAGCsiRNA23ShortStack
ccl-b1r1-10684Citrus clementina (Clementine) 1scaffold_7:5522394-5522495+1433.17UGAGAGACUGUACCUUACAUGCAsiRNA23ShortStack
ccl-b1r1-11049Citrus clementina (Clementine) 1scaffold_7:11428233-11428761+16,033355.13UCAGUGGCUUGACUAGGGAAUUCsiRNA23ShortStack
ccl-b1r1-11944Citrus clementina (Clementine) 1scaffold_8:4867132-4867164-1302.88UUGGCUUGACAUUUAACUUAAAGsiRNA23ShortStack
ccl-b1r1-12340Citrus clementina (Clementine) 1scaffold_8:13935386-13935466-1964.34UUUUAACCCAAAUACAGCAGCCUsiRNA23ShortStack
ccl-b1r1-12482Citrus clementina (Clementine) 1scaffold_8:17392620-17392698+2254.98GCUAAAUUGUAGGGCCUGCACCCsiRNA23ShortStack
ccl-b1r1-12514Citrus clementina (Clementine) 1scaffold_8:18029498-18029582-3618.00AUCGAAAACCUAUCAGUCAGACUsiRNA23ShortStack
ccl-b1r1-12734Citrus clementina (Clementine) 1scaffold_8:22096009-22096116-3507.75UGAGAAGUGGUUCUUUGGAAGCCsiRNA23ShortStack
ccl-b1r1-13604Citrus clementina (Clementine) 1scaffold_9:13431406-13431611.1222.70AAGGCACAUAGUAUAAAGGAGAAsiRNA23ShortStack
ccl-b1r1-13624Citrus clementina (Clementine) 1scaffold_9:14141623-14141825-1673.70AAGUGUUCAGGUGCUGUUUAGCUsiRNA23ShortStack
ccl-b1r1-13890Citrus clementina (Clementine) 1scaffold_9:24378015-24378091-1593.52CGAGCUUCGCUCAUUCCUUGGGCsiRNA23ShortStack
ccl-b1r1-14006Citrus clementina (Clementine) 1scaffold_9:26978958-26979055+1814.01UUGGACAGCUGUAACUUAAAAGCsiRNA23ShortStack