| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| ccl-b1r1-32 | Citrus clementina (Clementine) 1 | scaffold_1:461923-462053 | + | 166 | 3.68 | UACAGUCGUUUCAUGAAAAUC | | nearMIRNA | ShortStack |
| ccl-b1r1-334 | Citrus clementina (Clementine) 1 | scaffold_1:4702893-4703027 | - | 36,919 | 817.75 | UUUGGACUGAAGGGAGCUCCU | miR319 | nearMIRNA | ShortStack |
| ccl-b1r1-392 | Citrus clementina (Clementine) 1 | scaffold_1:5578522-5578582 | - | 168 | 3.72 | UCUAGCGACCGUAAAAUUAGC | | nearMIRNA | ShortStack |
| ccl-b1r1-795 | Citrus clementina (Clementine) 1 | scaffold_1:15997203-15997432 | - | 1,086 | 24.06 | AAUAAAGUCUGGGAUUCUCGGAUU | | nearMIRNA | ShortStack |
| ccl-b1r1-1005 | Citrus clementina (Clementine) 1 | scaffold_1:19634294-19634405 | + | 85 | 1.88 | AUCCAAUGACUGUGGAAGAAUCAU | | nearMIRNA | ShortStack |
| ccl-b1r1-1394 | Citrus clementina (Clementine) 1 | scaffold_1:27119230-27119319 | - | 100 | 2.22 | UAUUAUUGCAGUCGCCACGUUC | | nearMIRNA | ShortStack |
| ccl-b1r1-1419 | Citrus clementina (Clementine) 1 | scaffold_1:27499471-27499504 | - | 188 | 4.16 | AAUGUUUGGCUAAUAGAAUCUACU | | nearMIRNA | ShortStack |
| ccl-b1r1-1532 | Citrus clementina (Clementine) 1 | scaffold_1:28800631-28800772 | + | 165 | 3.66 | AGGAUUUUAAAGUUUUCUCGAACU | | nearMIRNA | ShortStack |
| ccl-b1r1-1909 | Citrus clementina (Clementine) 1 | scaffold_2:7226986-7227140 | - | 298 | 6.60 | AUGGGUGUUAAUUGGUUCAACUGG | | nearMIRNA | ShortStack |
| ccl-b1r1-1958 | Citrus clementina (Clementine) 1 | scaffold_2:8093638-8093663 | - | 163 | 3.61 | UGUGUUCUCAGGUCGCCCCUG | miR398 | nearMIRNA | ShortStack |
| ccl-b1r1-2138 | Citrus clementina (Clementine) 1 | scaffold_2:10578790-10578937 | + | 369 | 8.17 | ACUAUCUUUAGUGUAAUAUGGACU | | nearMIRNA | ShortStack |
| ccl-b1r1-2192 | Citrus clementina (Clementine) 1 | scaffold_2:11485318-11485431 | - | 154 | 3.41 | AGUGGAUGUAGGUCACUUAGUGGC | | nearMIRNA | ShortStack |
| ccl-b1r1-2330 | Citrus clementina (Clementine) 1 | scaffold_2:13919785-13919908 | - | 124 | 2.75 | UUGGAACUUACAGUAUGCUGC | | nearMIRNA | ShortStack |
| ccl-b1r1-2723 | Citrus clementina (Clementine) 1 | scaffold_2:23862473-23862500 | - | 157 | 3.48 | UUCCUGCGUUUUCUCAGAACC | | nearMIRNA | ShortStack |
| ccl-b1r1-3096 | Citrus clementina (Clementine) 1 | scaffold_2:29831806-29831850 | - | 309 | 6.84 | UGAGCUGUUUGGCUAUUCUCGC | | nearMIRNA | ShortStack |
| ccl-b1r1-3166 | Citrus clementina (Clementine) 1 | scaffold_2:31600592-31600796 | + | 339 | 7.51 | AUUCAAUGACUGUGGAAGAAUCAU | | nearMIRNA | ShortStack |
| ccl-b1r1-3524 | Citrus clementina (Clementine) 1 | scaffold_3:2521111-2521166 | + | 114 | 2.53 | CUAGUGAAGUUUUCUUAGAACU | | nearMIRNA | ShortStack |
| ccl-b1r1-3849 | Citrus clementina (Clementine) 1 | scaffold_3:6735388-6735409 | - | 225 | 4.98 | UGCCAAAGGAGAGUUGCCCUA | miR399 | nearMIRNA | ShortStack |
| ccl-b1r1-3880 | Citrus clementina (Clementine) 1 | scaffold_3:7213405-7213583 | + | 411 | 9.10 | ACGAGAGUUUGUGGCUGUAUCAUU | | nearMIRNA | ShortStack |
| ccl-b1r1-4186 | Citrus clementina (Clementine) 1 | scaffold_3:12616765-12616855 | + | 99 | 2.19 | UGAGAGACUGUACCUUACAUGCA | | nearMIRNA | ShortStack |
| ccl-b1r1-4191 | Citrus clementina (Clementine) 1 | scaffold_3:12772974-12773071 | - | 158 | 3.50 | UGUGAUAUUGGUUCGGCUCAUC | miR171 | nearMIRNA | ShortStack |
| ccl-b1r1-4209 | Citrus clementina (Clementine) 1 | scaffold_3:13055844-13055868 | + | 46,405 | 1,027.86 | UCUCGGACCAGGCUUCAUUCC | miR166 | nearMIRNA | ShortStack |
| ccl-b1r1-4363 | Citrus clementina (Clementine) 1 | scaffold_3:19284119-19284282 | - | 150 | 3.32 | AGGGAUUUCUGAUUUUAAUAAAGU | | nearMIRNA | ShortStack |
| ccl-b1r1-4528 | Citrus clementina (Clementine) 1 | scaffold_3:24944507-24944538 | + | 173 | 3.83 | UUACUUAAAAUUUUGACACAAAUU | | nearMIRNA | ShortStack |
| ccl-b1r1-4747 | Citrus clementina (Clementine) 1 | scaffold_3:34000605-34000744 | + | 215 | 4.76 | AUUCAACGGCUGUAGAAGAAUCGU | | nearMIRNA | ShortStack |
| ccl-b1r1-4835 | Citrus clementina (Clementine) 1 | scaffold_3:35290853-35291085 | + | 262 | 5.80 | ACAGACUGUUGCACUGAAUUGGUC | | nearMIRNA | ShortStack |
| ccl-b1r1-5079 | Citrus clementina (Clementine) 1 | scaffold_3:40617803-40617854 | - | 465 | 10.30 | UUCAUAUAACCGUCAUUAAAUGU | | nearMIRNA | ShortStack |
| ccl-b1r1-5262 | Citrus clementina (Clementine) 1 | scaffold_3:44054346-44054378 | + | 164 | 3.63 | CUGCCCUGAGCCACUUGAGAA | | nearMIRNA | ShortStack |
| ccl-b1r1-5619 | Citrus clementina (Clementine) 1 | scaffold_3:47795077-47795108 | - | 33,059 | 732.25 | UCGGACCAGGCUUCAUUCCCC | miR166 | nearMIRNA | ShortStack |
| ccl-b1r1-5620 | Citrus clementina (Clementine) 1 | scaffold_3:47795185-47795216 | - | 2,592 | 57.41 | GGAAUGUUGUCUGGCUCGAGG | miR166 | nearMIRNA | ShortStack |
| ccl-b1r1-5666 | Citrus clementina (Clementine) 1 | scaffold_3:48230582-48230667 | + | 337 | 7.46 | AUCCAACGGUUGUAGAAGAAUCAU | | nearMIRNA | ShortStack |
| ccl-b1r1-5811 | Citrus clementina (Clementine) 1 | scaffold_3:50300023-50300108 | + | 132 | 2.92 | UUUGUCUUUUAACUUGUCCUUACU | | nearMIRNA | ShortStack |
| ccl-b1r1-6552 | Citrus clementina (Clementine) 1 | scaffold_4:14518996-14519019 | + | 165 | 3.66 | UUUUUUGUCUGUAAGUGGCAUCCU | | nearMIRNA | ShortStack |
| ccl-b1r1-6553 | Citrus clementina (Clementine) 1 | scaffold_4:14521216-14521239 | + | 145 | 3.21 | UUUUUUGUCUGUAAGUGGCAUCCU | | nearMIRNA | ShortStack |
| ccl-b1r1-6580 | Citrus clementina (Clementine) 1 | scaffold_4:14962603-14962635 | - | 1,126 | 24.94 | AUAGGUAGAUUUAGUUAAUAGGAU | | nearMIRNA | ShortStack |
| ccl-b1r1-6800 | Citrus clementina (Clementine) 1 | scaffold_4:19102000-19102096 | - | 435 | 9.64 | ACUCUCCCUCAAGGGCUUCUC | miR477 | nearMIRNA | ShortStack |
| ccl-b1r1-7187 | Citrus clementina (Clementine) 1 | scaffold_4:24166917-24167148 | - | 2,386 | 52.85 | ACGAGAAUUUGUGACUGUAUCAUU | | nearMIRNA | ShortStack |
| ccl-b1r1-7574 | Citrus clementina (Clementine) 1 | scaffold_5:9489042-9489151 | + | 280 | 6.20 | UUUGACCUGGCUGUACCUUACAGC | | nearMIRNA | ShortStack |
| ccl-b1r1-7672 | Citrus clementina (Clementine) 1 | scaffold_5:14000830-14000950 | + | 1,267 | 28.06 | AAAGCUAUCUGUUGACUACUAAUC | | nearMIRNA | ShortStack |
| ccl-b1r1-7710 | Citrus clementina (Clementine) 1 | scaffold_5:15760571-15760604 | - | 136 | 3.01 | GAGGAUAAGAAUUCAGUACUGAGC | | nearMIRNA | ShortStack |
| ccl-b1r1-7918 | Citrus clementina (Clementine) 1 | scaffold_5:20499374-20499472 | + | 228 | 5.05 | UUAACCUUCCACCAGUGAUCUG | | nearMIRNA | ShortStack |
| ccl-b1r1-8077 | Citrus clementina (Clementine) 1 | scaffold_5:25353061-25353087 | - | 320 | 7.09 | CCAUCCAUGGGAUCCAUCAGACCU | | nearMIRNA | ShortStack |
| ccl-b1r1-8183 | Citrus clementina (Clementine) 1 | scaffold_5:29173194-29173231 | - | 6,161 | 136.47 | UCGCUUGGUGCAGGUCGGGAA | miR168 | nearMIRNA | ShortStack |
| ccl-b1r1-8906 | Citrus clementina (Clementine) 1 | scaffold_5:42405341-42405458 | + | 981 | 21.73 | UUGGCAUUCUGUCCACCUCC | miR394 | nearMIRNA | ShortStack |
| ccl-b1r1-9215 | Citrus clementina (Clementine) 1 | scaffold_6:7870865-7870977 | - | 262 | 5.80 | CCGAGAUAUAGUAUAAUUAAGAAC | | nearMIRNA | ShortStack |
| ccl-b1r1-9218 | Citrus clementina (Clementine) 1 | scaffold_6:7882158-7882214 | + | 211 | 4.67 | AGCACGAGAUAAAGACGAGAGAAU | | nearMIRNA | ShortStack |
| ccl-b1r1-9819 | Citrus clementina (Clementine) 1 | scaffold_6:17130178-17130331 | + | 514 | 11.39 | AGGAAUGAGAAUGAGCUGAAAUGG | | nearMIRNA | ShortStack |
| ccl-b1r1-10096 | Citrus clementina (Clementine) 1 | scaffold_6:21381626-21381658 | - | 180 | 3.99 | UGUUUGGGGUUAGAUUGUCAAAUA | | nearMIRNA | ShortStack |
| ccl-b1r1-10246 | Citrus clementina (Clementine) 1 | scaffold_6:24409466-24409527 | + | 128 | 2.84 | AUCCAAUGACUGUAGAAGAAUCAU | | nearMIRNA | ShortStack |
| ccl-b1r1-10247 | Citrus clementina (Clementine) 1 | scaffold_6:24423265-24423287 | - | 614 | 13.60 | UUGUCGCCGGAGAGAUAGCACC | miR3627 | nearMIRNA | ShortStack |
| ccl-b1r1-10320 | Citrus clementina (Clementine) 1 | scaffold_7:162078-162112 | - | 160 | 3.54 | AAUAAUGAAAUAUUUGCAGAACCU | | nearMIRNA | ShortStack |
| ccl-b1r1-11036 | Citrus clementina (Clementine) 1 | scaffold_7:11314884-11314910 | + | 106 | 2.35 | GCUCUAAAGUGUUUGGUAAACACU | | nearMIRNA | ShortStack |
| ccl-b1r1-11107 | Citrus clementina (Clementine) 1 | scaffold_7:12217548-12217745 | + | 1,019 | 22.57 | UUGUUGGAUUGGUGAGGGAUU | | nearMIRNA | ShortStack |
| ccl-b1r1-11264 | Citrus clementina (Clementine) 1 | scaffold_7:15646349-15646452 | + | 1,852 | 41.02 | UUGGACCAGGCUUCAUUCCUC | miR166 | nearMIRNA | ShortStack |
| ccl-b1r1-11789 | Citrus clementina (Clementine) 1 | scaffold_8:2490954-2491114 | - | 383 | 8.48 | AAUACGGACGUCCACACCUGAGAA | | nearMIRNA | ShortStack |
| ccl-b1r1-12187 | Citrus clementina (Clementine) 1 | scaffold_8:9297286-9297432 | + | 363 | 8.04 | UAGAUCCAGCUGUGGUAUGGUACC | | nearMIRNA | ShortStack |
| ccl-b1r1-12240 | Citrus clementina (Clementine) 1 | scaffold_8:10868421-10868474 | + | 365 | 8.09 | AUUGAAAACAUCAACCGAACGCC | | nearMIRNA | ShortStack |
| ccl-b1r1-12490 | Citrus clementina (Clementine) 1 | scaffold_8:17444254-17444291 | + | 3,081 | 68.24 | CUGUAGAAGGCUCCUGUGACC | | nearMIRNA | ShortStack |
| ccl-b1r1-12491 | Citrus clementina (Clementine) 1 | scaffold_8:17444383-17444416 | + | 2,010 | 44.52 | UCGCAGGAGCUUUCUACGGUU | | nearMIRNA | ShortStack |
| ccl-b1r1-12508 | Citrus clementina (Clementine) 1 | scaffold_8:17973662-17973803 | - | 19,541 | 432.83 | UCUGUGCACAAUAAGCCGAUGCUC | | nearMIRNA | ShortStack |
| ccl-b1r1-13013 | Citrus clementina (Clementine) 1 | scaffold_9:741548-741631 | + | 2,017 | 44.68 | UUAGAUUCACGCACAAACUCG | miR403 | nearMIRNA | ShortStack |
| ccl-b1r1-13609 | Citrus clementina (Clementine) 1 | scaffold_9:13606073-13606096 | - | 43 | 0.95 | AAUGGAUAAACUAAAAGACGAGAA | | nearMIRNA | ShortStack |
| ccl-b1r1-13754 | Citrus clementina (Clementine) 1 | scaffold_9:17710025-17710059 | - | 606 | 13.42 | ACCAUUGGAUUGUAUGAGAUCAAU | | nearMIRNA | ShortStack |
| ccl-b1r1-13835 | Citrus clementina (Clementine) 1 | scaffold_9:22012944-22013134 | + | 1,190 | 26.36 | GUACUGUAGCUGUGAGAGGGCCGU | | nearMIRNA | ShortStack |
| ccl-b1r1-13933 | Citrus clementina (Clementine) 1 | scaffold_9:25360642-25360679 | + | 355 | 7.86 | ACUUAAUUUUUCAUUCAUUGGAUC | | nearMIRNA | ShortStack |
| ccl-b1r1-13934 | Citrus clementina (Clementine) 1 | scaffold_9:25360758-25360787 | + | 92 | 2.04 | CAAUAGAUGAAAAAUUAAGUC | | nearMIRNA | ShortStack |
| ccl-b1r1-14041 | Citrus clementina (Clementine) 1 | scaffold_9:27832431-27832452 | + | 281 | 6.22 | UGCCAAAGGAGAGUUGCCCUG | miR399 | nearMIRNA | ShortStack |
| ccl-b1r1-14114 | Citrus clementina (Clementine) 1 | scaffold_9:28858330-28858437 | - | 81 | 1.79 | AGUUAUUCCAAAUGAUGUGUCAUU | | nearMIRNA | ShortStack |
Data from Lunardon et al. (2020)