het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica rapa var. pekinensis (Chinese Cabbage) genome build 1 (bra-b1)

Version v1 of Brassica rapa var. pekinensis cv. Chiifu-401-42 from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bra-b1r1-828Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:7442850-7443147-4,47448.05UCGUGCCCCACGGUGGGCGCCAsiRNA22ShortStack
bra-b1r1-890Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:7992283-7992428+2,60627.99GAGGGGCAAGAGGGCAACCAUGsiRNA22ShortStack
bra-b1r1-972Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:8534602-8534722+93910.09UGUAGAGGAAAGUAGAAAGCAUsiRNA22ShortStack
bra-b1r1-1110Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:9581458-9581895.7067.58UUGGUGCUGACUACCGAGAACUsiRNA22ShortStack
bra-b1r1-1111Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:9582534-9583620.1,48415.94AUGAGCAGGAGGAUGACCGGACCAsiRNA22ShortStack
bra-b1r1-1899Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:14920597-14920719+2,92631.43UCGGGCCCCACGGUGGGCGCCAsiRNA22ShortStack
bra-b1r1-1953Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:15209751-15209878.3643.91AAGCUAUGCGGAUUUCAAGAACsiRNA22ShortStack
bra-b1r1-1954Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:15210702-15210740.1932.07AAAAAUGAUUUCUGCGAACGCUsiRNA22ShortStack
bra-b1r1-1955Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:15212050-15212420.14,260153.15UCUCCAAGAUUGAAGGACGCGGsiRNA22ShortStack
bra-b1r1-2580Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:19053565-19053644.1091.17AACCAGAAUGGUUGCAAAAUCAGAsiRNA22ShortStack
bra-b1r1-3021Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:22033450-22033472.1201.29UCGGAGGAGUUUUAACUGCCAsiRNA22ShortStack
bra-b1r1-3550Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:26038056-26038260.2,27824.47UCUUUACAGAAUGCAUUGAACGGAsiRNA22ShortStack
bra-b1r1-3551Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:26038674-26039035-1,78719.19CCUGACAUGAGGAAGAAUCUGGsiRNA22ShortStack
bra-b1r1-3552Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:26039582-26039815-1,38114.83AAAGGUUACAUUUUGGGUCGUCsiRNA22ShortStack
bra-b1r1-3553Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:26040011-26040358.2222.38CUGUGAUGUUUCCGGCGGUUGUsiRNA22ShortStack
bra-b1r1-4148Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:2751258-2751640.5,12855.07CAAGAGGACCAUUACAUAUUUAsiRNA22ShortStack
bra-b1r1-4965Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:9406119-9406283.4,45747.87AACUCGCGGAGUGGAAGCGUAsiRNA22ShortStack
bra-b1r1-5525Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:12941936-12946372.242,7682,607.31UUAAAGACUUAAGGAAGACGUAsiRNA22ShortStack
bra-b1r1-5943Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:15704719-15705109.3373.62UCUACAAGACAUCAAAUUUCUGCUsiRNA22ShortStack
bra-b1r1-6116Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:16787343-16787687.1,12112.04UAGCCUGUACGCAUACUUCACAsiRNA22ShortStack
bra-b1r1-6239Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:17604809-17605874.13,080140.48UAGUCCGGGUGAAUUCCCAUAGGUsiRNA22ShortStack
bra-b1r1-6241Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:17607288-17608772.14,147151.94UUGGUGGCAUUCCUGCAUGACUsiRNA22ShortStack
bra-b1r1-6242Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:17608953-17609195.1311.41AUCUGGCUACAACGCUAUUAGAsiRNA22ShortStack
bra-b1r1-6244Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:17618891-17619167.3,07733.05CUGGGCUAUGACCAUUUUUCGGsiRNA22ShortStack
bra-b1r1-6248Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:17631260-17631370.2032.18UUGGAAGGCUUGGCAGGAGAAUsiRNA22ShortStack
bra-b1r1-6249Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:17631455-17631605.6637.12CAAGAAGAAGAAGAUGGGGCUCsiRNA22ShortStack
bra-b1r1-6468Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:19025602-19026113.1,13212.16UUGUUGCUGCAGUGGUUGACGsiRNA22ShortStack
bra-b1r1-6469Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:19026564-19027072.10,518112.96AAAAGAUCAAGGAUGAGAAGGCsiRNA22ShortStack
bra-b1r1-6984Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:22558050-22558506.4795.14UUCAUAGAUGACUGCACAAAAUsiRNA22ShortStack
bra-b1r1-7323Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:24965418-24965883.2,80030.07AGAGGAAUGUUUGUGUGUAGAAsiRNA22ShortStack
bra-b1r1-7352Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:25160853-25161007-2,93631.53UGAAGUGGAGUAGAGUAUAAUGmiR169siRNA22ShortStack
bra-b1r1-7541Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:27065748-27065949.2632.83CAUAUGAUCUCUGGAUAUGGCAsiRNA22ShortStack
bra-b1r1-8159Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:4898060-4898371+4,21545.27AACAUCUAAGGGACUGAGUUCUsiRNA22ShortStack
bra-b1r1-9360Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:15661490-15662266.98410.57ACUUGAUCUGUGACCGUAUAAAsiRNA22ShortStack
bra-b1r1-9595Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:17662555-17662919.6527.00CGGAGUCCCCGCAAGGUGGAGAsiRNA22ShortStack
bra-b1r1-10134Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:21693436-21693668.4034.33UCGGCUCAGCGGAAACAUUCAGsiRNA22ShortStack
bra-b1r1-10527Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:24376639-24377418.1,30514.02UUCCCGGAAUGAUAGGAAGCAUsiRNA22ShortStack
bra-b1r1-11177Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:29305688-29306026.3,05232.78CCGGACCACUUGCAGUUGCUGAsiRNA22ShortStack
bra-b1r1-11178Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:29306112-29306280-1481.59CAACUGUUGACAUAUGGGUGCAsiRNA22ShortStack
bra-b1r1-11652Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:478003-478192.1381.48UUGGAUUUUUUAUAUGAUACAUsiRNA22ShortStack
bra-b1r1-11672Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:576951-577499+11,556124.11GCGACCCCAGGUCAGGCGGGAUsiRNA22ShortStack
bra-b1r1-11902Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:2513282-2513884.2,33825.11UAAGGAGCUGUAGUUUGAUGGAsiRNA22ShortStack
bra-b1r1-12158Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:4135171-4135221.310.33AGAGGAUGCAGGAUAUCACACAsiRNA22ShortStack
bra-b1r1-12163Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:4149403-4149763.1,25513.48UGAACGGACCAUCAUACUCGCCsiRNA22ShortStack
bra-b1r1-12169Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:4180573-4180676.1671.79UUCAUAGAUGACUGCACAAAAUsiRNA22ShortStack
bra-b1r1-12985Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:9610779-9611271.5,35657.52CAGAAGCCUGAAAAUAGAGGUGsiRNA22ShortStack
bra-b1r1-12986Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:9611546-9611822.3,66139.32AGCGGUUUGUAGUCGAUAACUAsiRNA22ShortStack
bra-b1r1-14098Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:18245427-18245643+1952.09CCAGUAGUUCGUUAGGUUUGACsiRNA22ShortStack
bra-b1r1-15197Brassica rapa var. pekinensis (Chinese Cabbage) 1A05:8526572-8526882.4294.61AGUAGGAGGCUGCAUUGAUCCUsiRNA22ShortStack
bra-b1r1-16014Brassica rapa var. pekinensis (Chinese Cabbage) 1A05:14000921-14000950.390.42CUGGUGGUUCUGAUUUUGCAACsiRNA22ShortStack
bra-b1r1-16439Brassica rapa var. pekinensis (Chinese Cabbage) 1A05:16903936-16904164.2302.47UGGUAAUAGAGCAUGGGUCAGsiRNA22ShortStack
bra-b1r1-18346Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:9499735-9500385.1,42015.25UCCACCCAUACCAUACAGACCCmiR6030siRNA22ShortStack
bra-b1r1-18515Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:10619302-10619338+350.38AUUUUCCUGUAGAGAAAACAUGsiRNA22ShortStack
bra-b1r1-18601Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:11194755-11195020.2,57227.62CGGUCUAGGUGUGGAACAGGCUsiRNA22ShortStack
bra-b1r1-18842Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:12638324-12638461.1361.46AAGCUAUGCGGAUUUCAAGAACsiRNA22ShortStack
bra-b1r1-19721Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:18994150-18994546.2,28424.53AUGAAUCGUUUCAAGAUCGCUUsiRNA22ShortStack
bra-b1r1-21450Brassica rapa var. pekinensis (Chinese Cabbage) 1A07:5334447-5334488.2943.16CUGAAAUGGAACCCGUCUGAUAsiRNA22ShortStack
bra-b1r1-21451Brassica rapa var. pekinensis (Chinese Cabbage) 1A07:5335551-5335771.2,05722.09UGAUUAGGAAGAAUGGGAUGUAsiRNA22ShortStack
bra-b1r1-22045Brassica rapa var. pekinensis (Chinese Cabbage) 1A07:9197355-9197619.1,14712.32AGCAGUAACGAGUAGGAGGCUGsiRNA22ShortStack
bra-b1r1-22760Brassica rapa var. pekinensis (Chinese Cabbage) 1A07:14571648-14572136.2943.16AGACUGGUAGACCGGUGGUGGUsiRNA22ShortStack
bra-b1r1-23323Brassica rapa var. pekinensis (Chinese Cabbage) 1A07:19968200-19968496.1962.11UGUAGUACUGUACUCUUCGGCsiRNA22ShortStack
bra-b1r1-23989Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:3057788-3057917.1611.73AUGGCGUUUUUGUGAGCUUAGCsiRNA22ShortStack
bra-b1r1-25269Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:10531805-10532082.2072.22UCCGAAAUGGGCUACUUUUAUCsiRNA22ShortStack
bra-b1r1-25390Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:11346014-11346562.1,54416.58UUGUGGUGGAUUCUUCGUCAGCsiRNA22ShortStack
bra-b1r1-25391Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:11346876-11347061.5425.82ACUGAAGAUGACGAUUAGGAAGsiRNA22ShortStack
bra-b1r1-25392Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:11347291-11347588.1,97021.16UCGCAAUUGAAGGAUUGAUCUCsiRNA22ShortStack
bra-b1r1-26159Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:16852338-16852372-6617.10UCGGGUUUAUCGAACGGGUCGGsiRNA22ShortStack
bra-b1r1-26160Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:16852762-16853012.4,92252.86GUGAGAGAUUCGUCAGAGACAAsiRNA22ShortStack
bra-b1r1-26751Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:1360300-1360670.18,809202.01CACAGUAGACACGGUACAAUGGsiRNA22ShortStack
bra-b1r1-27699Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:8593235-8593263-1,87020.08AAUUUGCCAUACACUGAGCUCUsiRNA22ShortStack
bra-b1r1-27819Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:9304493-9305207-1,93520.78AAACAAGAAUUCUUGAACAGCGsiRNA22ShortStack
bra-b1r1-27913Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:9935959-9935993.1831.97AAGAUCUUAUUAAAUUUUUAGAGAsiRNA22ShortStack
bra-b1r1-28305Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:12475052-12475572.2,76829.73AUGCAACUGAUUGUUCUGCUUUsiRNA22ShortStack
bra-b1r1-28380Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:13020240-13020521+5866.29UGAUUAGGAAGAAUGGGAUGUAsiRNA22ShortStack
bra-b1r1-28505Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:13819331-13819453-1922.06AGGGUGAGUACUGUAUGGCACAsiRNA22ShortStack
bra-b1r1-28513Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:13842850-13843057-1,15712.43CCUGACAUGAGGAAGAAUCUGGsiRNA22ShortStack
bra-b1r1-28514Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:13843136-13843293-2863.07AAAAGAUCAAGGAUGAGAAGGCsiRNA22ShortStack
bra-b1r1-28515Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:13843341-13843568.1,05011.28UCUGGAUUCCAUCUGAAGCCUCsiRNA22ShortStack
bra-b1r1-29482Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:20272421-20272993.1,12212.05UUGUGAAUGUCUCGUAGAUGGAsiRNA22ShortStack
bra-b1r1-29483Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:20273428-20273904.98810.61UUCAUAGAUGACUGCACAAAAUsiRNA22ShortStack
bra-b1r1-29603Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:21093603-21093806-4,58149.20UGAAGCUGCCAGCAUGAUCUGGmiR167siRNA22ShortStack
bra-b1r1-32013Brassica rapa var. pekinensis (Chinese Cabbage) 1A10:2967670-2967855+8168.76AUAGAUUUGUAGUUUACAUGGCsiRNA22ShortStack
bra-b1r1-32254Brassica rapa var. pekinensis (Chinese Cabbage) 1A10:4826774-4826918.4274.59GCGACUGUUCUGAUGACGGAACsiRNA22ShortStack
bra-b1r1-32788Brassica rapa var. pekinensis (Chinese Cabbage) 1A10:8313235-8313259+1141.22AUCCUUGACUCAGAAACAAGAAsiRNA22ShortStack
bra-b1r1-32800Brassica rapa var. pekinensis (Chinese Cabbage) 1A10:8463761-8464061-21,206227.75AACAUCUAAGGGACUGAGUUCUsiRNA22ShortStack
bra-b1r1-32801Brassica rapa var. pekinensis (Chinese Cabbage) 1A10:8464139-8464167-2833.04AACAUCUAAGGGACUGAGUUCUsiRNA22ShortStack
bra-b1r1-33182Brassica rapa var. pekinensis (Chinese Cabbage) 1A10:11338733-11338949+3373.62UCAAGAAGUGGAUGAUUGAUUGmiR5722siRNA22ShortStack
bra-MIR5722-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A10:11338742-11338957+3353.60UCAAGAAGUGGAUGAUUGAUUGmiR5722siRNA22miRBase21-BestBlastHit
bra-b1r1-33894Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000096:692974-693220.5,01753.88UGUAGAGAAAACAUGAAAACGGsiRNA22ShortStack
bra-b1r1-33895Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000096:693311-693352.1,20312.92CUGAAAUGGAACCCGUCUGAUAsiRNA22ShortStack
bra-b1r1-33896Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000096:693493-693572.1,07211.51AGGACAAGCCGCUUAUGCCCUAsiRNA22ShortStack
bra-b1r1-33924Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000096:865118-865898.1,28313.78AACGGAUAAAUGGGCCGCAAGACGsiRNA22ShortStack
bra-b1r1-33925Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000096:866250-867590.2,13122.89UAGUGACUGAGAUCGCUGCAGUsiRNA22ShortStack
bra-b1r1-34243Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000104:421642-422036.2592.78GGACUCACGAUCUCAACCAGAGACsiRNA22ShortStack
bra-b1r1-34727Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000157:135879-136074+6266.72AUAGAUUUGUAGUUUACAUGGCsiRNA22ShortStack
bra-b1r1-34923Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000169:256752-256786.370.40AACUCCGAGCCCGAUGAUCAGAsiRNA22ShortStack
bra-b1r1-34992Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000172:225961-227560.1,40115.05UUCAGUUUCGAUUUCCGACGAUsiRNA22ShortStack
bra-b1r1-34993Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000172:228828-229338.6667.15UGGAAGAUACGGCCGUCUGAGsiRNA22ShortStack
bra-b1r1-34994Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000172:229502-229935.3814.09CUAAGUGGGAUGAGUGCUCGUGsiRNA22ShortStack
bra-b1r1-35234Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000208:75244-75538.8208.81UUGGUACCAAGUAUUGAAGAGUsiRNA22ShortStack
bra-b1r1-35271Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000213:19139-19191.1471.58AGGGAAGAAGAACUCAUCGCCsiRNA22ShortStack
bra-b1r1-35455Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000242:53554-54509.2,24324.09GGCGUGCUCUGGUCGCACCGGAsiRNA22ShortStack
bra-b1r1-36274Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000635:3386-3520-27,197292.09UCGAUUCCCGCUACCCGCUCCAsiRNA22ShortStack
bra-b1r1-36279Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000643:2416-2488-2,36925.44GCCCUUUUAACUCAGUGGUAGAsiRNA22ShortStack
bra-b1r1-36288Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000653:307-376.26,072280.01GAAGGAUCAUUGUCGUACCCUGGAsiRNA22ShortStack
bra-b1r1-36472Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold001236:754-849.2172.33UCGAGACAGAACUCCCUACAUUsiRNA22ShortStack
bra-b1r1-36973Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold013377:1-172.13,861148.87UGAACCGACGGGAAUGAACGAGsiRNA22ShortStack
bra-b1r1-37059Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold024804:1-123+2,16123.21CGGAACCGGGACGUGGCGGUUGsiRNA22ShortStack
bra-b1r1-37075Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold026399:71-111.3203.44AACUAAGAACGGCCAUGCACCAsiRNA22ShortStack
bra-b1r1-37080Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold026855:1-118.8799.44AUCUGGCUACAACGCUAUUAGAsiRNA22ShortStack
bra-b1r1-37205Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold039952:70-100+1,72218.49UCUGUGUACUGCGUACAACAAAsiRNA22ShortStack