het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica oleracea var. capitata (Cabbage) genome build 1.0 (bol-b1.0)

Version v1.0 of Brassica oleracea var. capitata cv. 02-12 from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bol-b1.0r1-650Brassica oleracea var. capitata (Cabbage) 1.0C01:10564025-10564316.5637.54UCUGCAGAGCACUUGUACAAsiRNA20ShortStack
bol-b1.0r1-1039Brassica oleracea var. capitata (Cabbage) 1.0C01:19043879-19043998-2773.71UUCGAUCAGAUUGUGGCAUAsiRNA20ShortStack
bol-b1.0r1-1846Brassica oleracea var. capitata (Cabbage) 1.0C01:33575473-33575524-1652.21CGGGCAAGUGGAGCGGUCGAsiRNA20ShortStack
bol-b1.0r1-2077Brassica oleracea var. capitata (Cabbage) 1.0C01:37498917-37499045+2,33731.30GACCGCAUAGCGCAGUGGAUsiRNA20ShortStack
bol-b1.0r1-2103Brassica oleracea var. capitata (Cabbage) 1.0C01:37986709-37986732+1,51620.30CCUGUUCAAGUAAGGUCGUAsiRNA20ShortStack
bol-b1.0r1-2104Brassica oleracea var. capitata (Cabbage) 1.0C01:37994019-37994043+1,58321.20CCUGUUCAAGUAAGGUCGUAsiRNA20ShortStack
bol-b1.0r1-2254Brassica oleracea var. capitata (Cabbage) 1.0C02:2290979-2291057-8,979120.26GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-2261Brassica oleracea var. capitata (Cabbage) 1.0C02:2392023-2392085-21,283285.04GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-2531Brassica oleracea var. capitata (Cabbage) 1.0C02:6634609-6634791+2983.99UCGGAAUUCGGCGUGUUUUAsiRNA20ShortStack
bol-b1.0r1-3063Brassica oleracea var. capitata (Cabbage) 1.0C02:14142070-14142194+2653.55AUGAACCAGAUCGUGGAUAAsiRNA20ShortStack
bol-b1.0r1-3088Brassica oleracea var. capitata (Cabbage) 1.0C02:14417873-14417917-94812.70UCGAACAGACAACGAAGAUUmiR858siRNA20ShortStack
bol-b1.0r1-3165Brassica oleracea var. capitata (Cabbage) 1.0C02:15808693-15808743+2803.75UGAUCAGAUCCGGCCUCGACsiRNA20ShortStack
bol-b1.0r1-3582Brassica oleracea var. capitata (Cabbage) 1.0C02:21997819-21997923+2503.35GAUCCCCGGCAACGGCGCCAmiR8175siRNA20ShortStack
bol-b1.0r1-3752Brassica oleracea var. capitata (Cabbage) 1.0C02:26814947-26815328-7189.62UGGACAGGCUUAGAGGACUUsiRNA20ShortStack
bol-b1.0r1-3979Brassica oleracea var. capitata (Cabbage) 1.0C02:31287782-31287847-3334.46AUAGGAACAAUAGGAAUGGAsiRNA20ShortStack
bol-b1.0r1-4188Brassica oleracea var. capitata (Cabbage) 1.0C02:35381779-35381806+3,18342.63GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-4286Brassica oleracea var. capitata (Cabbage) 1.0C02:37295188-37295333+9,673129.55GGGGAUAUAGCUCAGUUGGAsiRNA20ShortStack
bol-b1.0r1-4397Brassica oleracea var. capitata (Cabbage) 1.0C02:39310327-39310389+16,061215.11GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-4753Brassica oleracea var. capitata (Cabbage) 1.0C03:1561568-1561646-2,65835.60GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-6350Brassica oleracea var. capitata (Cabbage) 1.0C03:25960096-25960262+84811.36UGCAGUGGAGUUGGAGAUGCsiRNA20ShortStack
bol-b1.0r1-6414Brassica oleracea var. capitata (Cabbage) 1.0C03:27171056-27171247.4706.30GAUAACUGUGGAGAUUCGGCsiRNA20ShortStack
bol-b1.0r1-6646Brassica oleracea var. capitata (Cabbage) 1.0C03:30662045-30662158+5006.70GGAAUUUCGUCGGAAUAUCAsiRNA20ShortStack
bol-b1.0r1-7407Brassica oleracea var. capitata (Cabbage) 1.0C03:48980913-48980969-2,33031.21GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-7684Brassica oleracea var. capitata (Cabbage) 1.0C03:53927910-53927993+1,54720.72UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bol-b1.0r1-8201Brassica oleracea var. capitata (Cabbage) 1.0C04:5964798-5965004.3374.51CGAACCUAUCCGUCGGUAUCGUsiRNA20ShortStack
bol-b1.0r1-8841Brassica oleracea var. capitata (Cabbage) 1.0C04:17251721-17251862.5337.14GAUAGUUGGGAAUAUGGCUGsiRNA20ShortStack
bol-b1.0r1-8990Brassica oleracea var. capitata (Cabbage) 1.0C04:20502019-20502482+4546.08UCAAGUUGGAGCGUGAAGAUsiRNA20ShortStack
bol-b1.0r1-9185Brassica oleracea var. capitata (Cabbage) 1.0C04:24326606-24326692-12,561168.23GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-9572Brassica oleracea var. capitata (Cabbage) 1.0C04:30942348-30942442-93,6881,254.76GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
bol-b1.0r1-10371Brassica oleracea var. capitata (Cabbage) 1.0C05:2291404-2291430+2,00226.81GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-11328Brassica oleracea var. capitata (Cabbage) 1.0C05:19152699-19152875.2623.51AUACAAAGUAUUAGACCGUCsiRNA20ShortStack
bol-b1.0r1-11511Brassica oleracea var. capitata (Cabbage) 1.0C05:23206753-23206837.4556.09UCUAGGAUUCCAGAGACCGCsiRNA20ShortStack
bol-b1.0r1-11671Brassica oleracea var. capitata (Cabbage) 1.0C05:26524306-26526484+939,36612,580.92GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
bol-b1.0r1-12037Brassica oleracea var. capitata (Cabbage) 1.0C05:31839975-31840045+36,617490.41UCCCAAAUGUAGACAAAGCAmiR158siRNA20ShortStack
bol-b1.0r1-12231Brassica oleracea var. capitata (Cabbage) 1.0C06:2356503-2356579-2883.86GGCGGAUGUACCCAAGUGGAsiRNA20ShortStack
bol-b1.0r1-12586Brassica oleracea var. capitata (Cabbage) 1.0C06:7658035-7658115+3855.16UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bol-b1.0r1-12623Brassica oleracea var. capitata (Cabbage) 1.0C06:8246198-8246304+2473.31UUCGGACGCGGCGUCAGACAsiRNA20ShortStack
bol-b1.0r1-12725Brassica oleracea var. capitata (Cabbage) 1.0C06:10485286-10485380-3014.03GCUCCCGUAGCUCAGUUGGUsiRNA20ShortStack
bol-b1.0r1-13184Brassica oleracea var. capitata (Cabbage) 1.0C06:19472722-19472783+5437.27GGGAUUGUAGUUCAAUUGGCsiRNA20ShortStack
bol-b1.0r1-13299Brassica oleracea var. capitata (Cabbage) 1.0C06:21511110-21511227-75110.06GCUCCCGUAGCUCAGUUGGUsiRNA20ShortStack
bol-b1.0r1-13697Brassica oleracea var. capitata (Cabbage) 1.0C06:30044105-30044169-3,38745.36GACCGCAUAGCGCAGUGGAUsiRNA20ShortStack
bol-b1.0r1-14347Brassica oleracea var. capitata (Cabbage) 1.0C07:179584-179611+45,765612.93GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-14906Brassica oleracea var. capitata (Cabbage) 1.0C07:11938780-11938912-81910.97GAUAGUUGGGAAUGUGGCUAsiRNA20ShortStack
bol-b1.0r1-15699Brassica oleracea var. capitata (Cabbage) 1.0C07:29043613-29043869-1,98126.53CAGCAUCGAAGGAAACACAUsiRNA20ShortStack
bol-b1.0r1-15811Brassica oleracea var. capitata (Cabbage) 1.0C07:30604788-30604976.6598.83GCCGCUAUGGUGAAAUUGGAsiRNA20ShortStack
bol-b1.0r1-16242Brassica oleracea var. capitata (Cabbage) 1.0C07:37314089-37314152+13,090175.31GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-16397Brassica oleracea var. capitata (Cabbage) 1.0C07:39463904-39464136-3164.23UCGGACAGACGCAUUAGCAAsiRNA20ShortStack
bol-b1.0r1-16479Brassica oleracea var. capitata (Cabbage) 1.0C07:41218254-41218450+3945.28AUAGGACGGCUCAGAUGAUUsiRNA20ShortStack
bol-b1.0r1-16959Brassica oleracea var. capitata (Cabbage) 1.0C08:1848266-1848342-2,64235.38GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-17193Brassica oleracea var. capitata (Cabbage) 1.0C08:6781065-6781346.2823.78UGGGCUAGUCGAUCACGCAUsiRNA20ShortStack
bol-b1.0r1-17295Brassica oleracea var. capitata (Cabbage) 1.0C08:9569952-9569969-3224.31AGACUUGAGAAUUAGGCUGCsiRNA20ShortStack
bol-b1.0r1-18991Brassica oleracea var. capitata (Cabbage) 1.0C08:37771376-37771821-83211.14UUUUCGGUAGAUCAUUGGUAsiRNA20ShortStack
bol-b1.0r1-19303Brassica oleracea var. capitata (Cabbage) 1.0C09:2199607-2199691+68,853922.15GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-19421Brassica oleracea var. capitata (Cabbage) 1.0C09:3548115-3548183-3334.46AAUAAGCGUGCAUACUCUAUAsiRNA20ShortStack
bol-b1.0r1-19708Brassica oleracea var. capitata (Cabbage) 1.0C09:9047909-9047931+3855.16CAUAGAAUCAAGAAAGAGCAsiRNA20ShortStack
bol-b1.0r1-20068Brassica oleracea var. capitata (Cabbage) 1.0C09:16318533-16318656+2393.20UUCGAUCAGAUUGUGGCAUAsiRNA20ShortStack
bol-b1.0r1-20431Brassica oleracea var. capitata (Cabbage) 1.0C09:24122706-24122949.1502.01UCGAAAAUCGCCGUCGUCGCsiRNA20ShortStack
bol-b1.0r1-21209Brassica oleracea var. capitata (Cabbage) 1.0C09:36123170-36123233.1,28317.18UCUGAUCAUCAUGAGACCUAsiRNA20ShortStack
bol-b1.0r1-21323Brassica oleracea var. capitata (Cabbage) 1.0C09:37845248-37845341+10,297137.91GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
bol-b1.0r1-21473Brassica oleracea var. capitata (Cabbage) 1.0C09:40051405-40051477+1,93225.88GACCGCAUAGCGCAGUGGAUsiRNA20ShortStack