het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica oleracea var. capitata (Cabbage) genome build 1.0 (bol-b1.0)

Version v1.0 of Brassica oleracea var. capitata cv. 02-12 from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bol-b1.0r1-256Brassica oleracea var. capitata (Cabbage) 1.0C01:4052646-4052732-3,26343.70UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
bol-MIR9408-m1Brassica oleracea var. capitata (Cabbage) 1.0C01:13293228-13293358-1011.35UUUCAUCUUAGAGAAUGUUGUCmiR9408nearMIRNAmiRBase21-BestBlastHit
bol-b1.0r1-1013Brassica oleracea var. capitata (Cabbage) 1.0C01:18410885-18410926-5507.37UCUGAUGGUAGAAGAGAAAGAUAnearMIRNAShortStack
bol-b1.0r1-1395Brassica oleracea var. capitata (Cabbage) 1.0C01:26742003-26742232+2,53833.99UUGAUUGGUUAGUUGGACUUCnearMIRNAShortStack
bol-MIR157a-m1Brassica oleracea var. capitata (Cabbage) 1.0C01:31679982-31680111+522,6857,000.31UUGACAGAAGAUAGAGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
bol-b1.0r1-1728Brassica oleracea var. capitata (Cabbage) 1.0C01:31679985-31680009+522,6807,000.25UUGACAGAAGAUAGAGAGCACmiR156nearMIRNAShortStack
bol-b1.0r1-2157Brassica oleracea var. capitata (Cabbage) 1.0C02:311983-312046+3344.47GGUUUCGUGGUGUAGUUGGUUnearMIRNAShortStack
bol-MIR172a-m1Brassica oleracea var. capitata (Cabbage) 1.0C02:1546883-1547000-1081.45AGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
bol-b1.0r1-2420Brassica oleracea var. capitata (Cabbage) 1.0C02:4798350-4798431-75310.09UUCAAGGAGUCGAGUUUGGGAnearMIRNAShortStack
bol-b1.0r1-2762Brassica oleracea var. capitata (Cabbage) 1.0C02:10133217-10133242+29,967401.35UUGACAGAAGAAAGAGAGCACmiR156nearMIRNAShortStack
bol-b1.0r1-2939Brassica oleracea var. capitata (Cabbage) 1.0C02:12900074-12900110-3174.25AGGAUUGAUGGUUUAGAGUUUAGGnearMIRNAShortStack
bol-b1.0r1-4532Brassica oleracea var. capitata (Cabbage) 1.0C02:41474938-41475011+2,24030.00GUCUGGGUGGUGUAGUCGGUUnearMIRNAShortStack
bol-b1.0r1-4612Brassica oleracea var. capitata (Cabbage) 1.0C02:42957800-42957946+1702.28AUAGAUCGGGUUCGGAUAUUUnearMIRNAShortStack
bol-b1.0r1-4883Brassica oleracea var. capitata (Cabbage) 1.0C03:3813191-3813307-6,89092.28GGGGAUGUAGCUCAGAUGGUnearMIRNAShortStack
bol-b1.0r1-5156Brassica oleracea var. capitata (Cabbage) 1.0C03:7899737-7899870+3704.96UUGGGUUUAGGAUUUACGGUUUAnearMIRNAShortStack
bol-b1.0r1-5877Brassica oleracea var. capitata (Cabbage) 1.0C03:18897797-18897904+83811.22UCUGAUGUAUAUAGCUUUGGGmiR6034nearMIRNAShortStack
bol-b1.0r1-6045Brassica oleracea var. capitata (Cabbage) 1.0C03:20971657-20971693-1,28817.25UGGGCUUUUAAGAAGACGUUUnearMIRNAShortStack
bol-b1.0r1-6919Brassica oleracea var. capitata (Cabbage) 1.0C03:38751479-38751586+2873.84UGUUCAAGCCGGUACAACUCAAnearMIRNAShortStack
bol-b1.0r1-7040Brassica oleracea var. capitata (Cabbage) 1.0C03:42105398-42105565-8,353111.87CGGGACGUGUUAGUAGACGAAnearMIRNAShortStack
bol-b1.0r1-8535Brassica oleracea var. capitata (Cabbage) 1.0C04:12196811-12196898+1822.44UCAGACUGUGCAAGAGUAAGAUAnearMIRNAShortStack
bol-b1.0r1-9985Brassica oleracea var. capitata (Cabbage) 1.0C04:36700891-36701164-3,67649.23UAAAAGCCUUCAGAAUAUGAGmiR5711nearMIRNAShortStack
bol-b1.0r1-10269Brassica oleracea var. capitata (Cabbage) 1.0C05:338571-338598-1,09314.64UUGUGCAAGACUAAGAAGCAAnearMIRNAShortStack
bol-b1.0r1-11743Brassica oleracea var. capitata (Cabbage) 1.0C05:27765062-27765096-7239.68AUUGACGGAAGGGCACCACCAnearMIRNAShortStack
bol-b1.0r1-11885Brassica oleracea var. capitata (Cabbage) 1.0C05:29754460-29754489-3094.14UAAUGAAAUUCUAUUGGUCGGnearMIRNAShortStack
bol-b1.0r1-12012Brassica oleracea var. capitata (Cabbage) 1.0C05:31510489-31510583-3,56547.75GUCUGGGUGGUGUAGUCGGUUnearMIRNAShortStack
bol-b1.0r1-12313Brassica oleracea var. capitata (Cabbage) 1.0C06:3552461-3552645+21,374286.26UUUGGAUUGAAGGGAGCUCUAmiR159nearMIRNAShortStack
bol-b1.0r1-12443Brassica oleracea var. capitata (Cabbage) 1.0C06:5629220-5629400+4275.72GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
bol-b1.0r1-12495Brassica oleracea var. capitata (Cabbage) 1.0C06:6344098-6344189-1,97326.42ACUUAAUUAUAAGUCGUCUGGmiR9410nearMIRNAShortStack
bol-b1.0r1-13646Brassica oleracea var. capitata (Cabbage) 1.0C06:28894737-28894958-5527.39AACUACAAAAACUAAGAACCGGCUnearMIRNAShortStack
bol-b1.0r1-13899Brassica oleracea var. capitata (Cabbage) 1.0C06:33257020-33257117+6348.49UUUGGAUUGAAGGGAGCUCUAmiR159nearMIRNAShortStack
bol-b1.0r1-14343Brassica oleracea var. capitata (Cabbage) 1.0C07:78305-78368-124,8781,672.49UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
bol-b1.0r1-14674Brassica oleracea var. capitata (Cabbage) 1.0C07:6188865-6188916-93212.48UUAUAAUAAGUCGUCUGGAAGnearMIRNAShortStack
bol-b1.0r1-15452Brassica oleracea var. capitata (Cabbage) 1.0C07:25231866-25232078+1,15515.47AAUAGUUGACUGCGCAAAAUUGAGnearMIRNAShortStack
bol-b1.0r1-15654Brassica oleracea var. capitata (Cabbage) 1.0C07:28454417-28454643+3805.09AGAAACGGGUUCUUAUAUUUCnearMIRNAShortStack
bol-b1.0r1-16018Brassica oleracea var. capitata (Cabbage) 1.0C07:33700280-33700356+3,02940.57GGGGAUGUAGCUCAGAUGGUnearMIRNAShortStack
bol-b1.0r1-16090Brassica oleracea var. capitata (Cabbage) 1.0C07:35298326-35298359-7239.68UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
bol-b1.0r1-16380Brassica oleracea var. capitata (Cabbage) 1.0C07:39151311-39151335+2,77337.14CGUACAGAGUAGUCAAGCAUGmiR160nearMIRNAShortStack
bol-b1.0r1-16520Brassica oleracea var. capitata (Cabbage) 1.0C07:42036568-42036838-1,44919.41AAAGAACUCUACGCUUAAGGCCCAnearMIRNAShortStack
bol-b1.0r1-17294Brassica oleracea var. capitata (Cabbage) 1.0C08:9545971-9545993+79610.66AUAAAUCCCAAGCAUCAUCCAmiR5654nearMIRNAShortStack
bol-b1.0r1-17652Brassica oleracea var. capitata (Cabbage) 1.0C08:16282699-16282733+2603.48AAUAAUACACCCACAUGCUAAnearMIRNAShortStack
bol-b1.0r1-18224Brassica oleracea var. capitata (Cabbage) 1.0C08:27213688-27213864-4445.95AGAGACGGUAUCUUAUAUUCUGCUnearMIRNAShortStack
bol-b1.0r1-18542Brassica oleracea var. capitata (Cabbage) 1.0C08:32035510-32035530+3,04040.72UUAGAUGACCAUCAACAAAUAmiR827nearMIRNAShortStack
bol-b1.0r1-18792Brassica oleracea var. capitata (Cabbage) 1.0C08:34732294-34732347-5497.35UGAAAAAGCUGAGGAUUUGUUUAnearMIRNAShortStack
bol-b1.0r1-19177Brassica oleracea var. capitata (Cabbage) 1.0C08:41162987-41163071+4075.45AACAGCAAGACAUUCACAGACUCAnearMIRNAShortStack
bol-b1.0r1-19217Brassica oleracea var. capitata (Cabbage) 1.0C09:468211-468231+2,85638.25UCGGACCAGGCUUCAUCCCCCmiR165nearMIRNAShortStack
bol-b1.0r1-19588Brassica oleracea var. capitata (Cabbage) 1.0C09:6281370-6281530+3,21042.99UCAGAACCAAACCCAGAACAAGCAnearMIRNAShortStack
bol-b1.0r1-20005Brassica oleracea var. capitata (Cabbage) 1.0C09:14549337-14549370-2473.31AUAAACGGGCUUAAACGGGUAnearMIRNAShortStack
bol-b1.0r1-20185Brassica oleracea var. capitata (Cabbage) 1.0C09:19190692-19190735+2583.46CGGUGAGUGGAUGGUAAAAACCnearMIRNAShortStack
bol-b1.0r1-20496Brassica oleracea var. capitata (Cabbage) 1.0C09:25385110-25385144+2613.50AGGGUUUAGAAUUAAGGGGUGnearMIRNAShortStack
bol-b1.0r1-20606Brassica oleracea var. capitata (Cabbage) 1.0C09:26844111-26844150+2202.95AGAGUAGAAAAUAAAGCGAUGAACnearMIRNAShortStack
bol-b1.0r1-21254Brassica oleracea var. capitata (Cabbage) 1.0C09:36659404-36659426+88,9721,191.60UUGACAGAAGAGAGCGAGCACmiR156nearMIRNAShortStack
bol-b1.0r1-21392Brassica oleracea var. capitata (Cabbage) 1.0C09:38570317-38570346+1,93325.89UCUAAACACAAGGACUUGCAAnearMIRNAShortStack
bol-b1.0r1-21393Brassica oleracea var. capitata (Cabbage) 1.0C09:38575789-38575947+1,95026.12UCUAAACACAAGGACUUGCAAnearMIRNAShortStack
bol-b1.0r1-21395Brassica oleracea var. capitata (Cabbage) 1.0C09:38583130-38583160+1,94926.10UCUAAACACAAGGACUUGCAAnearMIRNAShortStack